diff --git a/.gitignore b/.gitignore index 157a1987..449daa44 100644 --- a/.gitignore +++ b/.gitignore @@ -126,6 +126,7 @@ wandb/ !napari_cellseg3d/_tests/res/wnet_test/*.tif !napari_cellseg3d/_tests/res/wnet_test/lab/*.tif !napari_cellseg3d/_tests/res/wnet_test/vol/*.tif +!examples/* #include docs images !docs/source/logo/* diff --git a/examples/README.md b/examples/README.md new file mode 100644 index 00000000..d71d6c3d --- /dev/null +++ b/examples/README.md @@ -0,0 +1,7 @@ +# Testing CellSeg3D on demo data + +Here is a very small volume (from [IDR project 853](https://idr.openmicroscopy.org/webclient/?show=project-853)) to test on. +You can install, launch `napari`, activate the CellSeg3D plugin app, and drag & drop this volume into the canvas. +Then, for example, run `inference` with one of our models. + +See [CellSeg3D documentation](https://adaptivemotorcontrollab.github.io/CellSeg3d/welcome.html) for more details. diff --git a/examples/test_very_small.tif b/examples/test_very_small.tif new file mode 100644 index 00000000..c206ebde Binary files /dev/null and b/examples/test_very_small.tif differ