Skip to content

Latest commit

 

History

History
19 lines (17 loc) · 995 Bytes

README.md

File metadata and controls

19 lines (17 loc) · 995 Bytes

Tools

A repository to hold generalizable functions and tools for use by lab members and collaborators

Usage

To use any of the Crombie Lab R functions you can source the code/functions.R file directly from this repository from RStudio. Just run this line of code

eval(parse(text = readLines("https://github.com/Crombie-Lab/Tools/raw/main/code/functions.R")))

Function help

geneticDistance()

This function will calculate the genetic distance between two physical positions in the C. elegans genome. The arguments to supply are left and right physical positions and chrom. Here's an example of how to use the function and its output.

g.dist <- geneticDistance(left = 3184137, right = 4436190, chrom = "V")
getting C. elegans genetic map from https://github.com/AndersenLab/post-gatk-nf/raw/main/input_files/annotations/c_elegans/c_elegans_genetic_map.bed.gz
 [100%] Downloaded 170878 bytes...
The genetic distance between V:3184137 and V:4436190 is 7.3644