From 3a7f98c491d9caa841e0aba87218e74bbb4f67b3 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Mon, 8 Sep 2025 15:15:57 +0000 Subject: [PATCH 1/4] Initial plan From 7037a4d0be313833958a720540bc08388453936c Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Mon, 8 Sep 2025 15:21:59 +0000 Subject: [PATCH 2/4] Add missing input data files needed for E3SM tests Co-authored-by: mahf708 <122953255+mahf708@users.noreply.github.com> --- inputdata/files-standalone.txt | 5 +++++ inputdata/files.txt | 12 ++++++++++++ 2 files changed, 17 insertions(+) diff --git a/inputdata/files-standalone.txt b/inputdata/files-standalone.txt index c1cbbaa..91c744a 100644 --- a/inputdata/files-standalone.txt +++ b/inputdata/files-standalone.txt @@ -53,3 +53,8 @@ https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals.d https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals.dat8 https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals.dat4 https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/revap_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/mu_r_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/maps/map_ne4pg2_to_ne2pg2_c20240902.nc diff --git a/inputdata/files.txt b/inputdata/files.txt index 3ae2804..fe9f1e5 100644 --- a/inputdata/files.txt +++ b/inputdata/files.txt @@ -160,3 +160,15 @@ https://web.lcrc.anl.gov/public/e3sm/inputdata/rof/mosart/US_reservoir_8th_NLDAS https://web.lcrc.anl.gov/public/e3sm/inputdata/share/domains/domain.lnd.ne4pg2_oQU480.200527.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/share/domains/domain.ocn.oQU480.151209.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/share/meshes/rof/SCRIPgrid_2x2_nomask_c210211.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/ocnfrac/domain.camocn.0.9x1.25_gx1v6_090403.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/sst/sst_HadOIBl_bc_0.9x1.25_clim_c040926.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/NYF/nyf.giss.T62.051007.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/NYF/nyf.gxgxs.T62.051007.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/NYF/nyf.ncep.T62.050923.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/CORE2/COREv2.correction_factors.T62.121007.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/domain.T62.050609.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/revap_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/mu_r_table_vals_v2.dat8 +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/maps/map_ne4pg2_to_ne2pg2_c20240902.nc From f1cbab9e17e8cb2f4fd93be2bb0871937c5e6582 Mon Sep 17 00:00:00 2001 From: Naser Mahfouz Date: Mon, 8 Sep 2025 11:33:55 -0400 Subject: [PATCH 3/4] Revert "Add missing input data files needed for E3SM tests" This reverts commit 7037a4d0be313833958a720540bc08388453936c. --- inputdata/files-standalone.txt | 5 ----- inputdata/files.txt | 12 ------------ 2 files changed, 17 deletions(-) diff --git a/inputdata/files-standalone.txt b/inputdata/files-standalone.txt index 91c744a..c1cbbaa 100644 --- a/inputdata/files-standalone.txt +++ b/inputdata/files-standalone.txt @@ -53,8 +53,3 @@ https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals.d https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals.dat8 https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals.dat4 https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/revap_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/mu_r_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/maps/map_ne4pg2_to_ne2pg2_c20240902.nc diff --git a/inputdata/files.txt b/inputdata/files.txt index fe9f1e5..3ae2804 100644 --- a/inputdata/files.txt +++ b/inputdata/files.txt @@ -160,15 +160,3 @@ https://web.lcrc.anl.gov/public/e3sm/inputdata/rof/mosart/US_reservoir_8th_NLDAS https://web.lcrc.anl.gov/public/e3sm/inputdata/share/domains/domain.lnd.ne4pg2_oQU480.200527.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/share/domains/domain.ocn.oQU480.151209.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/share/meshes/rof/SCRIPgrid_2x2_nomask_c210211.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/ocnfrac/domain.camocn.0.9x1.25_gx1v6_090403.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/sst/sst_HadOIBl_bc_0.9x1.25_clim_c040926.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/NYF/nyf.giss.T62.051007.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/NYF/nyf.gxgxs.T62.051007.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/NYF/nyf.ncep.T62.050923.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/CORE2/COREv2.correction_factors.T62.121007.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/datm7/domain.T62.050609.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vn_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/vm_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/revap_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/tables/mu_r_table_vals_v2.dat8 -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/scream/maps/map_ne4pg2_to_ne2pg2_c20240902.nc From 70aafb902fcff678758ea75a80a45d722965f780 Mon Sep 17 00:00:00 2001 From: Naser Mahfouz Date: Mon, 8 Sep 2025 11:37:24 -0400 Subject: [PATCH 4/4] fixes --- inputdata/files.txt | 124 ++++++++++++++++++++++++++++++++------------ 1 file changed, 90 insertions(+), 34 deletions(-) diff --git a/inputdata/files.txt b/inputdata/files.txt index 3ae2804..17bb3f8 100644 --- a/inputdata/files.txt +++ b/inputdata/files.txt @@ -1,17 +1,20 @@ https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/methane/ch4_oxid_1.9x2.5_L26_1990-1999clim.c090804.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mam/atmsrf_ne4pg2_200527.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mam/marine_BGC//monthly_macromolecules_0.1deg_bilinear_latlon_year01_merge_date.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/dvel/clim_soilw.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/dvel/depvel_monthly.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/dvel/regrid_vegetation.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/dvel/season_wes.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/phot/exo_coldens.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/phot/o2src.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/phot/tuv_xsect.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/Linoz_Chlorine_Loading_CMIP6_0003-2017_c20171114.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/clim_p_trop.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/linv3_1849-2017_CMIP6_Hist_10deg_58km_c20230705.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/ubvals_b40.20th.track1_1996-2005_c110315.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/aero/aerosoldep_monthly_1850_mean_1.9x2.5_c090421.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/aero/aerosoldep_monthly_1850_mean_1.9x2.5_c090421.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions_E90_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C2H4_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C2H6_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C3H8_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH2O_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH3CHO_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH3COCH3_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CO_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_ISOP_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_MTERP_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_NO_surface_2010_clim_1.9x2.5_c20230213.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_NO2_aircraft_vertical_2010_clim_1.9x2.5_c20230213.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_bc_a4_elev_1x1_2010_clim_c20190821.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_bc_a4_surf_1x1_2010_clim_c20190821.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a1_elev_1x1_2010_clim_c20190821.nc @@ -31,24 +34,24 @@ https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emi https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/emissions-cmip6_e3sm_SOAG0_elev_2010_clim_1.9x2.5_c20230213.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/emissions-cmip6_e3sm_SOAG0_surf_2010_clim_1.9x2.5_c20230213.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/DMSflux.2010.1deg_latlon_conserv.POPmonthlyClimFromACES4BGC_c20190220.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_NO2_aircraft_vertical_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C2H4_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C2H6_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C3H8_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH2O_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH3CHO_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH3COCH3_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CO_surface_2010_clim_1.9x2.5_c20230213.nc -https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_ISOP_surface_2010_clim_1.9x2.5_c20230213.nc 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+https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/phot/exo_coldens.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/phot/o2src.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/phot/tuv_xsect.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/clim_p_trop.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/Linoz_Chlorine_Loading_CMIP6_0003-2017_c20171114.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/linv3_1849-2017_CMIP6_Hist_10deg_58km_c20230705.nc +https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/chem/trop_mozart/ub/ubvals_b40.20th.track1_1996-2005_c110315.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/dst/dst_1.9x2.5_c090203.nc https://web.lcrc.anl.gov/public/e3sm/inputdata/atm/cam/inic/homme/eami_mam4_Linoz_ne4np4_L80_c20231010.nc 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