From e01d4d8545c4fca9a796af80bf243138fe4d14ac Mon Sep 17 00:00:00 2001 From: thliao Date: Tue, 26 May 2020 09:34:24 +0800 Subject: [PATCH] add progress bar tqdm --- micomplete/micomplete.py | 3 ++- setup.py | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/micomplete/micomplete.py b/micomplete/micomplete.py index b135845..170dc4b 100755 --- a/micomplete/micomplete.py +++ b/micomplete/micomplete.py @@ -33,6 +33,7 @@ from collections import OrderedDict, defaultdict from contextlib import contextmanager from distutils import spawn +from tqdm import tqdm import Bio from Bio import SeqIO @@ -709,7 +710,7 @@ def main(): 'file, remember to provide the --format argument.') # get() all processes to catch errors - for job in jobs: + for job in tqdm(jobs): try: job.get() except Exception as e: diff --git a/setup.py b/setup.py index 55b8f95..5e244ab 100644 --- a/setup.py +++ b/setup.py @@ -28,6 +28,7 @@ 'biopython>=1.53', 'numpy>=1.13', 'matplotlib>=2.0.2', + "tqdm", ], packages=find_packages(), include_package_data=True,