From 4fc532998a5d054f0dbb888f2aab3cea03bffb59 Mon Sep 17 00:00:00 2001 From: Nathaniel Starkman Date: Mon, 3 Mar 2025 00:42:58 -0500 Subject: [PATCH 1/3] =?UTF-8?q?=E2=9C=A8=20feat:=20add=20dispatch=20to=20D?= =?UTF-8?q?iffeqSolver=20call?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Signed-off-by: Nathaniel Starkman --- .pre-commit-config.yaml | 1 + src/diffraxtra/_src/diffeq_abc.py | 22 ++++++++++++++++++++-- src/diffraxtra/_src/interp.py | 2 +- 3 files changed, 22 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 9edbad4..28cebef 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -61,6 +61,7 @@ repos: - equinox - jaxtyping - numpy + - plum-dispatch - repo: https://github.com/codespell-project/codespell rev: "v2.3.0" diff --git a/src/diffraxtra/_src/diffeq_abc.py b/src/diffraxtra/_src/diffeq_abc.py index 8747d53..151ad85 100644 --- a/src/diffraxtra/_src/diffeq_abc.py +++ b/src/diffraxtra/_src/diffeq_abc.py @@ -76,8 +76,11 @@ class AbstractDiffEqSolver(eqx.Module, strict=True): #: so you can override the `max_steps` argument when calling `DiffEqSolver` max_steps: eqx.AbstractVar[int | None] - @partial(eqx.filter_jit) + # ------------------------------------------- + # @partial(quax.quaxify) # TODO: so don't need to strip units + @dispatch + @partial(eqx.filter_jit) def __call__( self: "AbstractDiffEqSolver", terms: PyTree[dfx.AbstractTerm], @@ -157,11 +160,26 @@ def __call__( return soln + @dispatch(precedence=-1) # type: ignore[no-redef] + @partial(eqx.filter_jit) + def __call__( + self: "AbstractDiffEqSolver", terms: Any, /, **kwargs: Any + ) -> dfx.Solution: + """Solve a differential equation, with keyword arguments.""" + t0 = kwargs.pop("t0") + t1 = kwargs.pop("t1") + dt0 = kwargs.pop("dt0") + y0 = kwargs.pop("y0") + args = kwargs.pop("args", None) + return self(terms, t0, t1, dt0, y0, args, **kwargs) + + # ------------------------------------------- + # TODO: a contextmanager for producing a temporary DiffEqSolver with # different field values. @classmethod - @dispatch.abstract # type: ignore[misc] + @dispatch.abstract def from_( cls: "type[AbstractDiffEqSolver]", *args: Any, **kwargs: Any ) -> "AbstractDiffEqSolver": diff --git a/src/diffraxtra/_src/interp.py b/src/diffraxtra/_src/interp.py index 4329807..b91eb31 100644 --- a/src/diffraxtra/_src/interp.py +++ b/src/diffraxtra/_src/interp.py @@ -349,7 +349,7 @@ def __init__( ) @classmethod - @dispatch.abstract # type: ignore[misc] + @dispatch.abstract def from_( cls: "type[VectorizedDenseInterpolation]", *args: Any, **kw: Any ) -> "VectorizedDenseInterpolation": From ddf23d2e686029124dfb5c5adb6a8589303f8e17 Mon Sep 17 00:00:00 2001 From: Nathaniel Starkman Date: Mon, 3 Mar 2025 08:53:17 -0500 Subject: [PATCH 2/3] =?UTF-8?q?=E2=AC=86=EF=B8=8F=20dep-bump(test):=20bump?= =?UTF-8?q?=20test=20deps?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pyproject.toml | 8 ++++---- uv.lock | 18 +++++++++--------- 2 files changed, 13 insertions(+), 13 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 826b1ef..596abce 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -50,11 +50,11 @@ ] nox = ["nox>=2024.10.9"] test = [ - "attrs", - "pytest >=6", + "attrs >=25.1", + "pytest >=8,<8.1", "pytest-cov >=3", - "sybil", - ] + "sybil >=9", +] [tool.hatch] version.source = "vcs" diff --git a/uv.lock b/uv.lock index fa772ca..285e8c9 100644 --- a/uv.lock +++ b/uv.lock @@ -369,21 +369,21 @@ requires-dist = [ [package.metadata.requires-dev] dev = [ - { name = "attrs" }, + { name = "attrs", specifier = ">=25.1" }, { name = "cz-conventional-gitmoji", specifier = ">=0.6.1" }, { name = "ipykernel", specifier = ">=6.29.5" }, { name = "nox", specifier = ">=2024.10.9" }, { name = "pre-commit", specifier = ">=4.1.0" }, - { name = "pytest", specifier = ">=6" }, + { name = "pytest", specifier = ">=8,<8.1" }, { name = "pytest-cov", specifier = ">=3" }, - { name = "sybil" }, + { name = "sybil", specifier = ">=9" }, ] nox = [{ name = "nox", specifier = ">=2024.10.9" }] test = [ - { name = "attrs" }, - { name = "pytest", specifier = ">=6" }, + { name = "attrs", specifier = ">=25.1" }, + { name = "pytest", specifier = ">=8,<8.1" }, { name = "pytest-cov", specifier = ">=3" }, - { name = "sybil" }, + { name = "sybil", specifier = ">=9" }, ] [[package]] @@ -970,7 +970,7 @@ wheels = [ [[package]] name = "pytest" -version = "8.3.4" +version = "8.0.2" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "colorama", marker = "sys_platform == 'win32'" }, @@ -978,9 +978,9 @@ dependencies = [ { name = "packaging" }, { name = "pluggy" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/05/35/30e0d83068951d90a01852cb1cef56e5d8a09d20c7f511634cc2f7e0372a/pytest-8.3.4.tar.gz", hash = "sha256:965370d062bce11e73868e0335abac31b4d3de0e82f4007408d242b4f8610761", size = 1445919 } +sdist = { url = "https://files.pythonhosted.org/packages/3f/c0/238f25cb27495fdbaa5c48cef9886162e9df1f3d0e957fc8326d9c24fa2f/pytest-8.0.2.tar.gz", hash = "sha256:d4051d623a2e0b7e51960ba963193b09ce6daeb9759a451844a21e4ddedfc1bd", size = 1396924 } wheels = [ - { url = "https://files.pythonhosted.org/packages/11/92/76a1c94d3afee238333bc0a42b82935dd8f9cf8ce9e336ff87ee14d9e1cf/pytest-8.3.4-py3-none-any.whl", hash = "sha256:50e16d954148559c9a74109af1eaf0c945ba2d8f30f0a3d3335edde19788b6f6", size = 343083 }, + { url = "https://files.pythonhosted.org/packages/a7/ea/d0ab9595a0d4b2320483e634123171deaf50885e29d442180efcbf2ed0b2/pytest-8.0.2-py3-none-any.whl", hash = "sha256:edfaaef32ce5172d5466b5127b42e0d6d35ebbe4453f0e3505d96afd93f6b096", size = 333984 }, ] [[package]] From 80a7ed3e49acefef593ed2bf1be429ddf296c1af Mon Sep 17 00:00:00 2001 From: Nathaniel Starkman Date: Mon, 3 Mar 2025 08:57:00 -0500 Subject: [PATCH 3/3] =?UTF-8?q?=F0=9F=94=A7=20config(test):=20check=20olde?= =?UTF-8?q?st?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Signed-off-by: Nathaniel Starkman --- .github/workflows/ci.yml | 2 +- .pre-commit-config.yaml | 10 +- README.md | 17 +- pyproject.toml | 24 +- src/diffraxtra/_src/diffeq_abc.py | 22 +- src/diffraxtra/_src/interp.py | 8 +- uv.lock | 418 +++++++++++++++++------------- 7 files changed, 275 insertions(+), 226 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 55bd58c..fa7e3fc 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -108,7 +108,7 @@ jobs: run: uv python install ${{ matrix.python-version }} - name: Install the project - run: uv sync --group test --resolution lowest-direct + run: uv sync --group test --resolution lowest - name: Test package run: >- diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 28cebef..34cc6fe 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -5,7 +5,7 @@ ci: repos: - repo: https://github.com/commitizen-tools/commitizen - rev: v4.1.0 + rev: v4.4.1 hooks: - id: commitizen additional_dependencies: [cz-conventional-gitmoji] @@ -44,14 +44,14 @@ repos: args: [--prose-wrap=always] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: "v0.8.6" + rev: "v0.9.9" hooks: - id: ruff args: ["--fix", "--show-fixes"] - id: ruff-format - repo: https://github.com/pre-commit/mirrors-mypy - rev: "v1.14.1" + rev: "v1.15.0" hooks: - id: mypy files: src @@ -64,7 +64,7 @@ repos: - plum-dispatch - repo: https://github.com/codespell-project/codespell - rev: "v2.3.0" + rev: "v2.4.1" hooks: - id: codespell @@ -88,7 +88,7 @@ repos: # additional_dependencies: ["validate-pyproject-schema-store[all]"] - repo: https://github.com/python-jsonschema/check-jsonschema - rev: "0.30.0" + rev: "0.31.2" hooks: - id: check-dependabot - id: check-github-workflows diff --git a/README.md b/README.md index 6c22775..f78742e 100644 --- a/README.md +++ b/README.md @@ -173,16 +173,13 @@ From a `diffrax.AbstractSolver` object. ```pycon >>> solver = DiffEqSolver.from_(dfx.Dopri5()) >>> solver -DiffEqSolver( - solver=Dopri5(scan_kind=None), - stepsize_controller=ConstantStepSize(), - adjoint=RecursiveCheckpointAdjoint(checkpoints=None), - event=None, - max_steps=4096 -) +DiffEqSolver(solver=Dopri5()) ``` +(Where all other arguments are their default values and printed only if +changed.) + From a `collections.abc.Mapping` ```pycon @@ -190,11 +187,7 @@ From a `collections.abc.Mapping` ... "stepsize_controller": dfx.PIDController(rtol=1e-5, atol=1e-5)}) >>> solver DiffEqSolver( - solver=Dopri5(scan_kind=None), - stepsize_controller=PIDController( ... ), - adjoint=RecursiveCheckpointAdjoint(checkpoints=None), - event=None, - max_steps=4096 + solver=Dopri5(), stepsize_controller=PIDController(rtol=1e-05, atol=1e-05) ) ``` diff --git a/pyproject.toml b/pyproject.toml index 596abce..c593c81 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,7 +25,9 @@ dynamic = ["version"] dependencies = [ "diffrax>=0.6", - "plum-dispatch>=2.5.1", + "equinox>=0.11.5", + "jaxtyping>=0.2.35", + "plum-dispatch>=2.5.7", "typing_extensions>=4.12.2", ] @@ -72,6 +74,7 @@ filterwarnings = [ "error", "ignore:jax.core.Primitive is deprecated:DeprecationWarning", + "ignore:jax.core.pp_eqn_rules is deprecated:DeprecationWarning", ] log_cli_level = "INFO" testpaths = [ @@ -143,3 +146,22 @@ src = ["src"] "diffrax" = "dfx" "equinox" = "eqx" "numpy" = "np" + + +[tool.uv] +constraint-dependencies = [ + # Because IPyKernel doesn't constrain its dependencies + "appnope >=0.1.4", + "cffi >=1.17", + "decorator >=5.1", + "psutil >=6.1.1", + "py >=1.11", + # Matplotlib + "matplotlib >=3.10", + "pillow>=10.3.0", + # Jax + "scipy >=1.14", + "jax>0.4.34", + # Misc + "opt-einsum >=3.3.0", +] diff --git a/src/diffraxtra/_src/diffeq_abc.py b/src/diffraxtra/_src/diffeq_abc.py index 151ad85..7141f39 100644 --- a/src/diffraxtra/_src/diffeq_abc.py +++ b/src/diffraxtra/_src/diffeq_abc.py @@ -230,13 +230,7 @@ def from_( >>> solver = DiffEqSolver.from_(dfx.Dopri5()) >>> solver - DiffEqSolver( - solver=Dopri5(scan_kind=None), - stepsize_controller=ConstantStepSize(), - adjoint=RecursiveCheckpointAdjoint(checkpoints=None), - event=None, - max_steps=4096 - ) + DiffEqSolver(solver=Dopri5()) """ return cls(scheme, **kwargs) @@ -257,11 +251,7 @@ def from_( ... "stepsize_controller": dfx.PIDController(rtol=1e-5, atol=1e-5)}) >>> solver DiffEqSolver( - solver=Dopri5(scan_kind=None), - stepsize_controller=PIDController( ... ), - adjoint=RecursiveCheckpointAdjoint(checkpoints=None), - event=None, - max_steps=4096 + solver=Dopri5(), stepsize_controller=PIDController(rtol=1e-05, atol=1e-05) ) """ @@ -282,13 +272,7 @@ def from_(cls: type[AbstractDiffEqSolver], obj: eqx.Partial, /) -> AbstractDiffE >>> solver = DiffEqSolver.from_(partial) >>> solver - DiffEqSolver( - solver=Dopri5(scan_kind=None), - stepsize_controller=ConstantStepSize(), - adjoint=RecursiveCheckpointAdjoint(checkpoints=None), - event=None, - max_steps=4096 - ) + DiffEqSolver(solver=Dopri5()) """ obj = eqx.error_if( diff --git a/src/diffraxtra/_src/interp.py b/src/diffraxtra/_src/interp.py index b91eb31..e0ae8cd 100644 --- a/src/diffraxtra/_src/interp.py +++ b/src/diffraxtra/_src/interp.py @@ -108,15 +108,15 @@ def evaluate( return ys # noqa: RET504 @override - @property # type: ignore[override] - def t0(self) -> BatchedRealScalar: + @property + def t0(self) -> BatchedRealScalar: # type: ignore[override] """The start time of the interpolation.""" flatt0 = jax.vmap(lambda x: x.t0)(self.scalar_interpolation) return cast(BatchedRealScalar, flatt0.reshape(*self.batch_shape)) @override - @property # type: ignore[override] - def t1(self) -> BatchedRealScalar: + @property + def t1(self) -> BatchedRealScalar: # type: ignore[override] """The end time of the interpolation.""" flatt1 = jax.vmap(lambda x: x.t1)(self.scalar_interpolation) return cast(BatchedRealScalar, flatt1.reshape(*self.batch_shape)) diff --git a/uv.lock b/uv.lock index 285e8c9..26ec9ce 100644 --- a/uv.lock +++ b/uv.lock @@ -6,6 +6,20 @@ resolution-markers = [ "python_full_version < '3.12'", ] +[manifest] +constraints = [ + { name = "appnope", specifier = ">=0.1.4" }, + { name = "cffi", specifier = ">=1.17" }, + { name = "decorator", specifier = ">=5.1" }, + { name = "jax", specifier = ">0.4.34" }, + { 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