From f6b2c172727290008f5af30473060c3abf1004f4 Mon Sep 17 00:00:00 2001 From: Aday Bujeda Date: Thu, 23 Jun 2022 18:18:19 +0100 Subject: [PATCH 1/4] Added Computational Workflow metadata and related documentation --- conf/solr/8.11.1/schema.xml | 6 ++ .../8639-computational-workflow.md | 6 ++ doc/sphinx-guides/source/user/appendix.rst | 1 + .../source/user/dataset-management.rst | 92 ++++++++++++++++++ .../source/user/img/DatasetDiagram.png | Bin 84006 -> 44967 bytes .../source/user/img/bagit-handler-errors.png | Bin 0 -> 236059 bytes .../img/computational-workflow-diagram.png | Bin 0 -> 97193 bytes .../img/computational-workflow-facets.png | Bin 0 -> 773471 bytes .../img/computational-workflow-metadata.png | Bin 0 -> 67860 bytes .../source/user/img/file-tags-facets.png | Bin 0 -> 479516 bytes .../source/user/img/file-tags-link.png | Bin 0 -> 80076 bytes .../source/user/img/file-tags-options.png | Bin 0 -> 151661 bytes .../metadatablocks/computational_workflow.tsv | 21 ++++ scripts/api/setup-datasetfields.sh | 2 + .../dataverse/ControlledVocabularyValue.java | 2 +- .../computationalworkflow.properties | 27 +++++ 16 files changed, 156 insertions(+), 1 deletion(-) create mode 100644 doc/release-notes/8639-computational-workflow.md mode change 100755 => 100644 doc/sphinx-guides/source/user/img/DatasetDiagram.png create mode 100644 doc/sphinx-guides/source/user/img/bagit-handler-errors.png create mode 100644 doc/sphinx-guides/source/user/img/computational-workflow-diagram.png create mode 100644 doc/sphinx-guides/source/user/img/computational-workflow-facets.png create mode 100644 doc/sphinx-guides/source/user/img/computational-workflow-metadata.png create mode 100644 doc/sphinx-guides/source/user/img/file-tags-facets.png create mode 100644 doc/sphinx-guides/source/user/img/file-tags-link.png create mode 100644 doc/sphinx-guides/source/user/img/file-tags-options.png create mode 100644 scripts/api/data/metadatablocks/computational_workflow.tsv create mode 100644 src/main/java/propertyFiles/computationalworkflow.properties diff --git a/conf/solr/8.11.1/schema.xml b/conf/solr/8.11.1/schema.xml index ead6e882d49..b0d4327d495 100644 --- a/conf/solr/8.11.1/schema.xml +++ b/conf/solr/8.11.1/schema.xml @@ -261,6 +261,9 @@ + + + @@ -498,6 +501,9 @@ + + + diff --git a/doc/release-notes/8639-computational-workflow.md b/doc/release-notes/8639-computational-workflow.md new file mode 100644 index 00000000000..d1f014e4af3 --- /dev/null +++ b/doc/release-notes/8639-computational-workflow.md @@ -0,0 +1,6 @@ +## Adding Computational Workflow Metadata +The new Computational Workflow metadata block will allow depositors to effectively tag datasets as computational workflows. + +To add the new metadata block, follow the instructions in the user guide: + +The location of the new metadata block tsv file is: `dataverse/scripts/api/data/metadatablocks/computational_workflow.tsv` \ No newline at end of file diff --git a/doc/sphinx-guides/source/user/appendix.rst b/doc/sphinx-guides/source/user/appendix.rst index 003f02cdd61..55617fe559f 100755 --- a/doc/sphinx-guides/source/user/appendix.rst +++ b/doc/sphinx-guides/source/user/appendix.rst @@ -26,5 +26,6 @@ Detailed below are what metadata schemas we support for Citation and Domain Spec `Virtual Observatory (VO) Discovery and Provenance Metadata `__ (`see .tsv version `__). - `Life Sciences Metadata `__: based on `ISA-Tab Specification `__, along with controlled vocabulary from subsets of the `OBI Ontology `__ and the `NCBI Taxonomy for Organisms `__ (`see .tsv version `__). - `Journal Metadata `__: based on the `Journal Archiving and Interchange Tag Set, version 1.2 `__ (`see .tsv version `__). +- `Computational Workflow Metadata `__: adapted from `Bioschemas Computational Workflow Profile, version 1.0 `__ and `Codemeta `__ (`see .tsv version `__). See also the `Dataverse Software 4.0 Metadata Crosswalk: DDI, DataCite, DC, DCTerms, VO, ISA-Tab `__ document and the :doc:`/admin/metadatacustomization` section of the Admin Guide. diff --git a/doc/sphinx-guides/source/user/dataset-management.rst b/doc/sphinx-guides/source/user/dataset-management.rst index e9b69eb8573..fd76bab4880 100755 --- a/doc/sphinx-guides/source/user/dataset-management.rst +++ b/doc/sphinx-guides/source/user/dataset-management.rst @@ -38,6 +38,8 @@ Once a dataset has been published, its metadata can be exported in a variety of Each of these metadata exports contains the metadata of the most recently published version of the dataset. +.. _adding-new-dataset: + Adding a New Dataset ==================== @@ -62,6 +64,8 @@ We currently only support the following HTML tags for any of our textbox metadat
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