diff --git a/base/Dockerfile b/base/Dockerfile index 6e2b609..82a0273 100644 --- a/base/Dockerfile +++ b/base/Dockerfile @@ -44,6 +44,7 @@ RUN apt-get update && apt-get -yqq dist-upgrade && \ texlive-latex-base \ texlive-latex-extra \ unzip \ + zsh \ vim \ && \ # Setup locales @@ -143,7 +144,7 @@ USER $NB_USER RUN echo "Install R and R basic packages" && \ conda config --add channels conda-forge && \ - conda install -y \ + conda install -c r -y \ 'r-essentials=3.5.1' && \ conda config --add channels ataenzer && \ conda config --add channels jsignell && \ @@ -151,8 +152,6 @@ RUN echo "Install R and R basic packages" && \ conda config --add channels omgarcia && \ conda config --add channels cgat && \ conda config --add channels sebp && \ - conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/ && \ - conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/ && \ conda install -y \ 'r-tm' \ 'r-rcolorbrewer' \ @@ -175,8 +174,7 @@ RUN echo "Install R and R basic packages" && \ install.packages('wordcloud'); \ install.packages('wordcloud2'); \ install.packages('xgboost'); \ - install.packages('plotly');" && \ - echo 'options("repos" = c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/"))' > ~/.Rprofile && \ + install.packages('plotly');" \ conda clean -tipsy # Add Julia packages. Only add HDF5 if this is not a test-only build since