diff --git a/primeseq/build.gradle b/primeseq/build.gradle index 0d7767f20..1a8b44122 100644 --- a/primeseq/build.gradle +++ b/primeseq/build.gradle @@ -1,5 +1,13 @@ import org.labkey.gradle.util.BuildUtils; +repositories { + mavenCentral() + // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk + maven { + url "https://clojars.org/repo" + } +} + dependencies { implementation "com.github.samtools:htsjdk:${htsjdkVersion}" implementation "net.sf.opencsv:opencsv:${opencsvVersion}" diff --git a/tcrdb/build.gradle b/tcrdb/build.gradle index de1b8d419..44b61bd11 100644 --- a/tcrdb/build.gradle +++ b/tcrdb/build.gradle @@ -1,5 +1,13 @@ import org.labkey.gradle.util.BuildUtils; +repositories { + mavenCentral() + // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk + maven { + url "https://clojars.org/repo" + } +} + dependencies { BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:DiscvrLabKeyModules:singlecell", depProjectConfig: "apiJarFile") BuildUtils.addLabKeyDependency(project: project, config: "implementation", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "apiJarFile") diff --git a/variantdb/build.gradle b/variantdb/build.gradle index 3752d3158..d260381fe 100644 --- a/variantdb/build.gradle +++ b/variantdb/build.gradle @@ -1,5 +1,13 @@ import org.labkey.gradle.util.BuildUtils; +repositories { + mavenCentral() + // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk + maven { + url "https://clojars.org/repo" + } +} + dependencies { implementation "com.github.samtools:htsjdk:${htsjdkVersion}" external "commons-net:commons-net:${commonsNetVersion}"