From f88b76c89108a7bbebc8c4bead1fbfb748a4c211 Mon Sep 17 00:00:00 2001 From: Adam Rauch Date: Thu, 1 Dec 2022 15:28:50 -0800 Subject: [PATCH] Route all temp file creation through FileUtil for consistency --- .../org/labkey/primeseq/pipeline/MhcMigrationPipelineJob.java | 2 +- tcrdb/src/org/labkey/tcrdb/TCRdbController.java | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/primeseq/src/org/labkey/primeseq/pipeline/MhcMigrationPipelineJob.java b/primeseq/src/org/labkey/primeseq/pipeline/MhcMigrationPipelineJob.java index c5b7d0853..099546d0c 100644 --- a/primeseq/src/org/labkey/primeseq/pipeline/MhcMigrationPipelineJob.java +++ b/primeseq/src/org/labkey/primeseq/pipeline/MhcMigrationPipelineJob.java @@ -279,7 +279,7 @@ private void syncAssay(String providerName, String assayName, List runCo continue; } - File assayTmp = File.createTempFile("assay-upload", ".txt").getAbsoluteFile(); + File assayTmp = FileUtil.createTempFile("assay-upload", ".txt").getAbsoluteFile(); ViewBackgroundInfo info = getJob().getInfo(); ViewContext vc = ViewContext.getMockViewContext(info.getUser(), workbookMap.get(wb), info.getURL(), false); final Set missingAnalyses = new HashSet<>(); diff --git a/tcrdb/src/org/labkey/tcrdb/TCRdbController.java b/tcrdb/src/org/labkey/tcrdb/TCRdbController.java index bdad868b1..d01289760 100644 --- a/tcrdb/src/org/labkey/tcrdb/TCRdbController.java +++ b/tcrdb/src/org/labkey/tcrdb/TCRdbController.java @@ -163,7 +163,7 @@ public ModelAndView getView(ExportAlignmentsForm form, BindException errors) thr SimpleDateFormat fmt = new SimpleDateFormat("yyyy-MM-dd"); for (File f : VDJMap.keySet()) { - File tmp = File.createTempFile("mixcr", ".txt"); + File tmp = FileUtil.createTempFile("mixcr", ".txt"); MiXCRWrapper wrapper = new MiXCRWrapper(_log); //TODO: //wrapper.setLibraryPath();