From 4ec2e497a7cd99437efe86464f3fa62f6d66ed7b Mon Sep 17 00:00:00 2001 From: labkey-susanh Date: Tue, 22 Sep 2020 14:55:54 -0700 Subject: [PATCH] Add missing dependencies on opencsv and httpmime that used to be leaking out of the labkey-client-api. Since both of these dependencies are included in the api module transitively, we compromise a bit and do not include them in the jars.txt for each individual module. --- SequenceAnalysis/build.gradle | 2 ++ 1 file changed, 2 insertions(+) diff --git a/SequenceAnalysis/build.gradle b/SequenceAnalysis/build.gradle index ea5aa5a64..a8ef91b6a 100644 --- a/SequenceAnalysis/build.gradle +++ b/SequenceAnalysis/build.gradle @@ -24,6 +24,8 @@ dependencies { external 'org.itadaki:bzip2:0.9.1' external 'org.clojars.chapmanb:sam:1.96' external "org.apache.commons:commons-math3:${commonsMath3Version}" + implementation "net.sf.opencsv:opencsv:${opencsvVersion}" + // picard brings in a version of servlet-api and a very old one at that, so we excluded it // Note: if changing this, we might need to match the htsjdk version set in gradle.properties external("com.github.broadinstitute:picard:2.22.4") {