diff --git a/snd/.babelrc b/snd/.babelrc new file mode 100644 index 000000000..ad2ef38ba --- /dev/null +++ b/snd/.babelrc @@ -0,0 +1,16 @@ +{ + "presets": [["env", { + "targets": { + "browsers": ["> 0.2%", "last 2 versions", "Firefox 45", "not dead"] + } + } + ], "react"], + "env": { + "development": { + "presets": ["react-hmre"] + }, + "test": { + "plugins": ["transform-es2015-modules-commonjs"] + } + } +} \ No newline at end of file diff --git a/snd/.gitattributes b/snd/.gitattributes new file mode 100644 index 000000000..176a458f9 --- /dev/null +++ b/snd/.gitattributes @@ -0,0 +1 @@ +* text=auto diff --git a/snd/.gitignore b/snd/.gitignore new file mode 100644 index 000000000..5e42d202c --- /dev/null +++ b/snd/.gitignore @@ -0,0 +1,9 @@ +node_modules +app.css +app.css.map +app.js +app.js.map +.labkey +import +resources/web/snd/app/style.js +.gradle diff --git a/snd/LICENSE.txt b/snd/LICENSE.txt new file mode 100644 index 000000000..8f71f43fe --- /dev/null +++ b/snd/LICENSE.txt @@ -0,0 +1,202 @@ + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. 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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright {yyyy} {name of copyright owner} + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + diff --git a/snd/README.md b/snd/README.md new file mode 100644 index 000000000..bf6f1a43e --- /dev/null +++ b/snd/README.md @@ -0,0 +1 @@ +# snd \ No newline at end of file diff --git a/snd/api-src/org/labkey/api/snd/AttributeData.java b/snd/api-src/org/labkey/api/snd/AttributeData.java new file mode 100644 index 000000000..2e24a8afc --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/AttributeData.java @@ -0,0 +1,143 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONObject; +import org.labkey.api.data.Container; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.query.ValidationException; +import org.labkey.api.security.User; + +/** + * Class for attribute data and related methods. Used in EventData class + */ +public class AttributeData +{ + private int _propertyId = -1; + private String _propertyName; + private GWTPropertyDescriptor _propertyDescriptor; + private String _value; + private ValidationException _exception; + + public static final String ATTRIBUTE_DATA_PROPERTY_ID = "propertyId"; + public static final String ATTRIBUTE_DATA_PROPERTY_NAME = "propertyName"; + public static final String ATTRIBUTE_DATA_PROPERTY_DESCRIPTOR = "propertyDescriptor"; + public static final String ATTRIBUTE_DATA_VALUE = "value"; + + public static final String ATTRIBUTE_DATA_CSS_CLASS = "snd-attribute-data"; + + public static final String DATE_TIME_FORMAT = "yyyy-MM-dd'T'HH:mm:ss"; // ISO8601 w/24-hour time and 'T' character + public static final String DATE_FORMAT = "yyyy-MM-dd"; // ISO8601 + + public AttributeData(int propertyId, @Nullable GWTPropertyDescriptor propertyDescriptor, @Nullable String value) + { + _propertyId = propertyId; + _propertyDescriptor = propertyDescriptor; + _value = value; + } + + public AttributeData(String propertyName, @Nullable GWTPropertyDescriptor propertyDescriptor, @Nullable String value) + { + _propertyName = propertyName; + _propertyDescriptor = propertyDescriptor; + _value = value; + } + + public AttributeData() + {} + + public int getPropertyId() + { + return _propertyId; + } + + public void setPropertyId(int propertyId) + { + _propertyId = propertyId; + } + + public String getPropertyName() + { + return _propertyName; + } + + public void setPropertyName(String propertyName) + { + _propertyName = propertyName; + } + + public ValidationException getException() + { + return _exception; + } + + public void setException(Event event, ValidationException exception) + { + _exception = exception; + event.updateExceptionCount(exception); + } + + @Nullable + public GWTPropertyDescriptor getPropertyDescriptor() + { + return _propertyDescriptor; + } + + public void setPropertyDescriptor(GWTPropertyDescriptor propertyDescriptor) + { + _propertyDescriptor = propertyDescriptor; + } + + @Nullable + public String getValue() + { + return _value; + } + + public void setValue(String value) + { + _value = value; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + if (getPropertyId() != 0) + json.put(ATTRIBUTE_DATA_PROPERTY_ID, getPropertyId()); + + if (getPropertyName() != null) + json.put(ATTRIBUTE_DATA_PROPERTY_NAME, getPropertyName()); + + if (getPropertyDescriptor() != null) + json.put(ATTRIBUTE_DATA_PROPERTY_DESCRIPTOR, SNDService.get().convertPropertyDescriptorToJson(c, u, getPropertyDescriptor(), true)); + + // We want to ensure the attribute is returned even if null + json.put(ATTRIBUTE_DATA_VALUE, getValue() == null ? JSONObject.NULL : getValue()); + + if (_exception != null) + { + JSONObject jsonException = new JSONObject(); + jsonException.put(Event.SND_EXCEPTION_MSG_JSON, _exception.getMessage()); + jsonException.put(Event.SND_EXCEPTION_SEVERITY_JSON, _exception.getSeverity()); + json.put(Event.SND_EXCEPTION_JSON, jsonException); + } + + return json; + } +} diff --git a/snd/api-src/org/labkey/api/snd/Category.java b/snd/api-src/org/labkey/api/snd/Category.java new file mode 100644 index 000000000..8091ff902 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/Category.java @@ -0,0 +1,136 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.labkey.api.data.Container; +import org.labkey.api.module.Module; +import org.labkey.api.module.ModuleLoader; +import org.labkey.api.security.HasPermission; +import org.labkey.api.security.SecurableResource; +import org.labkey.api.security.User; +import org.labkey.api.util.GUID; + +import java.util.Collections; +import java.util.List; + +public class Category implements SecurableResource, HasPermission +{ + private int _categoryId; + private String _description; + private boolean _active; + private GUID _objectId; + private Container _container; + + public int getCategoryId() + { + return _categoryId; + } + + public void setCategoryId(int categoryId) + { + _categoryId = categoryId; + } + + public String getDescription() + { + return _description; + } + + public void setDescription(String description) + { + _description = description; + } + + public boolean isActive() + { + return _active; + } + + public void setActive(boolean active) + { + _active = active; + } + + public GUID getObjectId() + { + return _objectId; + } + + public void setObjectId(GUID objectId) + { + _objectId = objectId; + } + + public Container getContainer() + { + return _container; + } + + public void setContainer(Container container) + { + _container = container; + } + + @Override + public @NotNull String getResourceId() + { + return _objectId.toString(); + } + + @Override + public @NotNull String getResourceName() + { + return "SND.Category." + _categoryId; + } + + @Override + public @NotNull String getResourceDescription() + { + return _description; + } + + @Override + public @NotNull Module getSourceModule() + { + return ModuleLoader.getInstance().getModule("SND"); + } + + @Override + public @Nullable SecurableResource getParentResource() + { + return null; + } + + @Override + public @NotNull Container getResourceContainer() + { + return _container; + } + + @Override + public @NotNull List getChildResources(User user) + { + return Collections.emptyList(); + } + + @Override + public boolean mayInheritPolicy() + { + return false; + } +} diff --git a/snd/api-src/org/labkey/api/snd/Event.java b/snd/api-src/org/labkey/api/snd/Event.java new file mode 100644 index 000000000..a1ac4df9e --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/Event.java @@ -0,0 +1,489 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONArray; +import org.json.JSONObject; +import org.labkey.api.collections.ArrayListMap; +import org.labkey.api.data.Container; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.query.BatchValidationException; +import org.labkey.api.query.ValidationException; +import org.labkey.api.security.User; +import org.labkey.api.util.DateUtil; + +import java.util.Comparator; +import java.util.Date; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.TreeSet; + +import static org.labkey.api.snd.EventNarrativeOption.HTML_NARRATIVE; +import static org.labkey.api.snd.EventNarrativeOption.REDACTED_HTML_NARRATIVE; +import static org.labkey.api.snd.EventNarrativeOption.REDACTED_TEXT_NARRATIVE; +import static org.labkey.api.snd.EventNarrativeOption.TEXT_NARRATIVE; + +/** + * Class for event data and related methods. Used when saving, updating, deleting and getting an event + */ +public class Event +{ + private Integer _eventId; + private String _subjectId; + private Date _date; + private String _projectIdRev; + private String _note; + private Integer _noteId; + private List _eventData; + private String _parentObjectId; + private Map narratives; + private Map _extraFields = new HashMap<>(); + private Integer _qcState; + private String _objectId; + + // This will store a count of the different severity of exceptions + private Map _exceptionCount = new HashMap<>(); + private ValidationException _eventException = null; + + public static final String EVENT_ID = "eventId"; + public static final String EVENT_SUBJECT_ID = "subjectId"; + public static final String EVENT_DATE = "date"; + public static final String EVENT_PROJECT_ID_REV = "projectIdRev"; + public static final String EVENT_NOTE = "note"; + public static final String EVENT_QCSTATE = "qcState"; + public static final String EVENT_DATA = "eventData"; + public static final String EVENT_PARENT_OBJECTID = "parentObjectId"; + public static final String EVENT_CONTAINER = "Container"; + public static final String EVENT_OBJECTID = "ObjectId"; + + public static final String DATE_TIME_FORMAT = "yyyy-MM-dd'T'HH:mm:ss"; // ISO8601 w/24-hour time and 'T' character + + public static final String SND_EVENT_NAMESPACE = "SND.EventData"; + + public static final String SND_EVENT_DATE_CSS_CLASS = "snd-event-date"; + public static final String SND_EVENT_SUBJECT_CSS_CLASS = "snd-event-subject"; + public static final String SND_EVENT_NOTE_CSS_CLASS = "snd-event-note"; + + public static final String SND_EXCEPTION_MSG_JSON = "message"; + public static final String SND_EXCEPTION_SEVERITY_JSON = "severity"; + public static final String SND_EXCEPTION_JSON = "exception"; + + public Event(@Nullable Integer eventId, String subjectId, @Nullable Date date, @NotNull String projectIdRev, @Nullable String note, @Nullable List eventData, @NotNull Container c, @Nullable String objectId) + { + _eventId = eventId != null ? eventId : SNDSequencer.EVENTID.ensureId(c, null); + _subjectId = subjectId; + _date = date; + _projectIdRev = projectIdRev; + _note = note; + _eventData = eventData; + _noteId = SNDSequencer.EVENTID.ensureId(c, null); + _objectId = objectId; + } + + public Event () {} + + @Nullable + public Integer getEventId() + { + return _eventId; + } + + public void setEventId(Integer eventId) + { + _eventId = eventId; + } + + public String getSubjectId() + { + return _subjectId; + } + + public void setSubjectId(String subjectId) + { + _subjectId = subjectId; + } + + @Nullable + public Date getDate() + { + return _date; + } + + public void setDate(Date date) + { + _date = date; + } + + @Nullable + public String getProjectIdRev() + { + return _projectIdRev; + } + + public void setProjectIdRev(String projectIdRev) + { + _projectIdRev = projectIdRev; + } + + @Nullable + public String getParentObjectId() + { + return _parentObjectId; + } + + public void setParentObjectId(String parentObjectId) + { + _parentObjectId = parentObjectId; + } + + @Nullable + public String getNote() + { + return _note; + } + + public void setNote(String note) + { + _note = note; + } + + @Nullable + public Integer getNoteId() + { + return _noteId; + } + + public void setNoteId(Integer noteId) + { + _noteId = noteId; + } + + @Nullable + public List getEventData() + { + return _eventData; + } + + public void setEventData(List eventData) + { + _eventData = eventData; + } + + @NotNull + public Map getExtraFields() + { + return _extraFields; + } + + public void setExtraFields(@NotNull Map extraFields) + { + _extraFields = extraFields; + } + + public Map getNarratives() + { + return narratives; + } + + public void setNarratives(Map narratives) + { + this.narratives = narratives; + } + + public Integer getQcState() + { + return _qcState; + } + + @Nullable + public QCStateEnum getQcState(Container c, User u) + { + if (_qcState == null) + { + return null; + } + + return SNDService.get().getQCState(c, u, _qcState); + } + + public void setQcState(Integer qcState) + { + _qcState = qcState; + } + + public void setQcState(Container c, User u, QCStateEnum qcState) + { + _qcState = SNDService.get().getQCStateId(c, u, qcState); + } + + public String getObjectId() + { + return _objectId; + } + + public void setObjectId(String objectId) + { + _objectId = objectId; + } + + public ValidationException getException() + { + return _eventException; + } + + public void setException(ValidationException eventException) + { + _eventException = eventException; + } + + public Map getExceptionCountMap() + { + return _exceptionCount; + } + + public void updateExceptionCount(ValidationException e) + { + Integer count = _exceptionCount.get(e.getSeverity()); + if (count != null) + { + count++; + } + else + { + count = 1; + } + + _exceptionCount.put(e.getSeverity(), count); + } + + public Integer getErrorCount() + { + Integer count = _exceptionCount.get(ValidationException.SEVERITY.ERROR); + return count == null ? 0 : count; + } + + public void addBatchValidationExceptions(BatchValidationException bve) + { + int count; + for (ValidationException ve : bve.getRowErrors()) + { + count = 0; + if (_exceptionCount.get(ve.getSeverity()) != null) + { + count = _exceptionCount.get(ve.getSeverity()) + 1; + } + _exceptionCount.put(ve.getSeverity(), count); + if (ve.getSeverity() == ValidationException.SEVERITY.ERROR) + _eventException = ve; + } + } + + public boolean hasErrors() + { + Integer count = _exceptionCount.get(ValidationException.SEVERITY.ERROR); + if (count != null && count > 0) + return true; + + return (_eventException != null && _eventException.getSeverity() == ValidationException.SEVERITY.ERROR); + } + + public boolean hasErrorsWarningsOrInfo() + { + Integer errorCount = _exceptionCount.get(ValidationException.SEVERITY.ERROR); + Integer warningCount = _exceptionCount.get(ValidationException.SEVERITY.WARN); + Integer infoCount = _exceptionCount.get(ValidationException.SEVERITY.INFO); + if ((errorCount != null && errorCount > 0) || (warningCount != null && warningCount > 0) || (infoCount != null && infoCount > 0)) + return true; + + return (_eventException != null); + } + + @NotNull + public Map getEventRow(Container c) + { + Map eventValues = new ArrayListMap<>(); + if (getEventId() != null) + eventValues.put(EVENT_ID, getEventId()); + + eventValues.put(EVENT_SUBJECT_ID, getSubjectId()); + eventValues.put(EVENT_DATE, getDate()); + eventValues.put(EVENT_PARENT_OBJECTID, getParentObjectId()); + eventValues.put(EVENT_QCSTATE, getQcState()); + eventValues.put(EVENT_CONTAINER, c.getId()); + eventValues.put(EVENT_OBJECTID, getObjectId()); + + Map extras = getExtraFields(); + for (GWTPropertyDescriptor gpd : extras.keySet()) + { + eventValues.put(gpd.getName(), extras.get(gpd)); + } + + return eventValues; + } + + @NotNull + public Map getEventNotesRow(Container c) + { + Map eventValues = new ArrayListMap<>(); + if (getEventId() != null) + eventValues.put(EVENT_ID, getEventId()); + + eventValues.put(EVENT_NOTE, getNote()); + eventValues.put(EVENT_CONTAINER, c.getId()); + + return eventValues; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + json.put(EVENT_ID, getEventId()); + json.put(EVENT_SUBJECT_ID, getSubjectId()); + + if (getDate() != null) + json.put(EVENT_DATE, DateUtil.formatDateTime(getDate(), DATE_TIME_FORMAT)); + + json.put(EVENT_PROJECT_ID_REV, getProjectIdRev()); + json.put(EVENT_NOTE, getNote()); + + if (_qcState != null) + { + json.put(EVENT_QCSTATE, getQcState(c, u).getName()); + } + if (_objectId != null) + { + json.put(EVENT_OBJECTID, getObjectId()); + } + + JSONArray eventDataJson = new JSONArray(); + if (getEventData() != null) + { + for (EventData eventData : getEventData()) + { + eventDataJson.put(eventData.toJSON(c, u)); + } + } + json.put(EVENT_DATA, eventDataJson); + + JSONArray extras = new JSONArray(); + Map extraFields = getExtraFields(); + if (extraFields != null) + { + JSONObject jsonExtra; + Set keys = new TreeSet<>( + Comparator.comparing(GWTPropertyDescriptor::getName) + ); + keys.addAll(extraFields.keySet()); + for (GWTPropertyDescriptor extraPd : keys) + { + jsonExtra = SNDService.get().convertPropertyDescriptorToJson(c, u, extraPd, true); + jsonExtra.put("value", extraFields.get(extraPd)); + extras.put(jsonExtra); + } + + json.put("extraFields", extras); + } + + if (_eventException != null) + { + JSONObject jsonException = new JSONObject(); + jsonException.put(Event.SND_EXCEPTION_MSG_JSON, _eventException.getMessage()); + jsonException.put(Event.SND_EXCEPTION_SEVERITY_JSON, _eventException.getSeverity()); + json.put(Event.SND_EXCEPTION_JSON, jsonException); + } + else + { + StringBuilder msg = new StringBuilder(); + Integer count = _exceptionCount.get(ValidationException.SEVERITY.ERROR); + ValidationException.SEVERITY severity = null; + if (count != null && count > 0) + { + severity = ValidationException.SEVERITY.ERROR; + msg.append(count + " error"); + if (count > 1) + msg.append("s"); + } + + count = _exceptionCount.get(ValidationException.SEVERITY.WARN); + if (count != null && count > 0) + { + if (severity == null) + severity = ValidationException.SEVERITY.WARN; + + if (msg.length() > 0) + msg.append(", "); + + msg.append(count + " warning"); + if (count > 1) + msg.append("s"); + } + + count = _exceptionCount.get(ValidationException.SEVERITY.INFO); + if (count != null && count > 0) + { + if (severity == null) + severity = ValidationException.SEVERITY.INFO; + + if (msg.length() > 0) + msg.append(", "); + + msg.append(count + " info"); + if (count > 1) + msg.append("s"); + } + + if (msg.length() > 0) + { + msg.append(" found"); + + JSONObject jsonException = new JSONObject(); + jsonException.put(Event.SND_EXCEPTION_MSG_JSON, msg.toString()); + jsonException.put(Event.SND_EXCEPTION_SEVERITY_JSON, severity); + json.put(Event.SND_EXCEPTION_JSON, jsonException); + } + } + Map narratives = getNarratives(); + if (narratives != null) + { + for (EventNarrativeOption narrativeOption : narratives.keySet()) + { + String narrative = narratives.get(narrativeOption); + switch (narrativeOption) + { + case TEXT_NARRATIVE: + json.put(TEXT_NARRATIVE.getKey(), narrative); + break; + case REDACTED_TEXT_NARRATIVE: + json.put(REDACTED_TEXT_NARRATIVE.getKey(), narrative); + break; + case HTML_NARRATIVE: + json.put(HTML_NARRATIVE.getKey(), narrative); + break; + case REDACTED_HTML_NARRATIVE: + json.put(REDACTED_HTML_NARRATIVE.getKey(), narrative); + break; + } + } + } + + return json; + } +} diff --git a/snd/api-src/org/labkey/api/snd/EventData.java b/snd/api-src/org/labkey/api/snd/EventData.java new file mode 100644 index 000000000..a764eab22 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/EventData.java @@ -0,0 +1,280 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONArray; +import org.json.JSONObject; +import org.labkey.api.collections.ArrayListMap; +import org.labkey.api.data.Container; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.query.ValidationException; +import org.labkey.api.security.User; + +import java.util.ArrayList; +import java.util.Comparator; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.TreeSet; + +/** + * Class for event data and related methods. Used in Event class + */ +public class EventData +{ + private Integer _eventDataId; + private int _superPkgId; + private int _eventId; + private Integer _parentEventDataId; + private Integer _sortOrder; + private String _narrativeTemplate; + private String _objectURI; + private List _subPackages; + private List _attributes = new ArrayList<>(); + private Map _extraFields = new HashMap<>(); + private ValidationException _exception; + + public static final String EVENT_DATA_ID = "eventDataId"; + public static final String EVENT_DATA_SUPER_PACKAGE_ID = "superPkgId"; + public static final String EVENT_DATA_NARRATIVE_TEMPLATE = "narrativeTemplate"; + public static final String EVENT_DATA_SUB_PACKAGES = "subPackages"; + public static final String EVENT_DATA_ATTRIBUTES = "attributes"; + public static final String EVENT_DATA_OBJECTURI = "objectURI"; + public static final String EVENT_DATA_EVENTID = "eventId"; + public static final String EVENT_DATA_PARENT_EVENTDATAID = "parentEventDataId"; + public static final String EVENT_DATA_SORT_ORDER = "sortOrder"; + public static final String EVENT_DATA_CONTAINER = "Container"; + public static final String EVENT_DATA_CSS_CLASS = "snd-event-data"; + public static final String EVENT_DATA_EXTRA_FIELDS = "extraFields"; + + public EventData(@Nullable Integer eventDataId, int superPkgId, @Nullable String narrative, @Nullable List subPackages, @NotNull List attributes) + { + this(eventDataId, superPkgId, narrative, subPackages, attributes, null); + } + public EventData(@Nullable Integer eventDataId, int superPkgId, @Nullable String narrative, @Nullable List subPackages, @NotNull List attributes , @Nullable Integer sortOrder) + { + _eventDataId = eventDataId; + _superPkgId = superPkgId; + _narrativeTemplate = narrative; + _subPackages = subPackages; + _sortOrder = sortOrder; + + if (attributes != null) + _attributes = attributes; + } + public EventData() {} + + @Nullable + public Integer getEventDataId() + { + return _eventDataId; + } + + public void setEventDataId(Integer eventDataId) + { + _eventDataId = eventDataId; + } + + public int getSuperPkgId() + { + return _superPkgId; + } + + public void setSuperPkgId(int superPkgId) + { + _superPkgId = superPkgId; + } + + @Nullable + public Integer getParentEventDataId() + { + return _parentEventDataId; + } + + public void setParentEventDataId(Integer parentEventDataId) + { + _parentEventDataId = parentEventDataId; + } + + @Nullable + public String getNarrativeTemplate() + { + return _narrativeTemplate; + } + + public void setNarrativeTemplate(String narrative) + { + _narrativeTemplate = narrative; + } + + @Nullable + public String getObjectURI() + { + return _objectURI; + } + + public void setObjectURI(String objectURI) + { + _objectURI = objectURI; + } + + public int getEventId() + { + return _eventId; + } + + public void setEventId(int eventId) + { + _eventId = eventId; + } + + public ValidationException getException() + { + return _exception; + } + + public void setException(Event event, ValidationException exception) + { + _exception = exception; + event.updateExceptionCount(exception); + } + + public Integer getSortOrder() + { + return _sortOrder; + } + + public void setSortOrder(Integer sortOrder) + { + _sortOrder = sortOrder; + } + + @Nullable + public List getSubPackages() + { + return _subPackages; + } + + public void setSubPackages(List subPackages) + { + _subPackages = subPackages; + } + + @NotNull + public List getAttributes() + { + return _attributes; + } + + public void setAttributes(@NotNull List attributes) + { + _attributes = attributes; + } + + @NotNull + public Map getExtraFields() + { + return _extraFields; + } + + public void setExtraFields(@NotNull Map extraFields) + { + _extraFields = extraFields; + } + + @NotNull + public Map getEventDataRow(Container c) + { + Map eventDataValues = new ArrayListMap<>(); + eventDataValues.put(EVENT_DATA_ID, getEventDataId()); + eventDataValues.put(EVENT_DATA_SUPER_PACKAGE_ID, getSuperPkgId()); + eventDataValues.put(EVENT_DATA_OBJECTURI, getObjectURI()); + eventDataValues.put(EVENT_DATA_EVENTID, getEventId()); + eventDataValues.put(EVENT_DATA_PARENT_EVENTDATAID, getParentEventDataId()); + eventDataValues.put(EVENT_DATA_CONTAINER, c); + eventDataValues.put(EVENT_DATA_SORT_ORDER, getSortOrder()); + + Map extras = getExtraFields(); + for (GWTPropertyDescriptor gpd : extras.keySet()) + { + eventDataValues.put(gpd.getName(), extras.get(gpd)); + } + + return eventDataValues; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + json.put(EVENT_DATA_ID, getEventDataId()); + json.put(EVENT_DATA_SUPER_PACKAGE_ID, getSuperPkgId()); + json.put(EVENT_DATA_NARRATIVE_TEMPLATE, getNarrativeTemplate()); + json.put(EVENT_DATA_SORT_ORDER, getSortOrder()); + + JSONArray subPackagesJson = new JSONArray(); + if (getSubPackages() != null) + { + for (EventData eventData : getSubPackages()) + { + subPackagesJson.put(eventData.toJSON(c, u)); + } + } + json.put(EVENT_DATA_SUB_PACKAGES, subPackagesJson); + + JSONArray attributesJson = new JSONArray(); + if (getAttributes() != null) + { + for (AttributeData attributeData : getAttributes()) + { + attributesJson.put(attributeData.toJSON(c, u)); + } + } + json.put(EVENT_DATA_ATTRIBUTES, attributesJson); + + JSONArray extras = new JSONArray(); + Map extraFields = getExtraFields(); + if(extraFields != null) + { + JSONObject jsonExtra; + Set keys = new TreeSet<>( + Comparator.comparing(GWTPropertyDescriptor::getName) + ); + keys.addAll(extraFields.keySet()); + for (GWTPropertyDescriptor extraPd : keys) + { + jsonExtra = SNDService.get().convertPropertyDescriptorToJson(c, u, extraPd, true); + jsonExtra.put("value", extraFields.get(extraPd)); + extras.put(jsonExtra); + } + + json.put("extraFields", extras); + } + + if (_exception != null) + { + JSONObject jsonException = new JSONObject(); + jsonException.put(Event.SND_EXCEPTION_MSG_JSON, _exception.getMessage()); + jsonException.put(Event.SND_EXCEPTION_SEVERITY_JSON, _exception.getSeverity()); + json.put(Event.SND_EXCEPTION_JSON, jsonException); + } + + return json; + } +} diff --git a/snd/api-src/org/labkey/api/snd/EventNarrativeOption.java b/snd/api-src/org/labkey/api/snd/EventNarrativeOption.java new file mode 100644 index 000000000..5726d7e6f --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/EventNarrativeOption.java @@ -0,0 +1,36 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +public enum EventNarrativeOption +{ + TEXT_NARRATIVE("textNarrative"), + REDACTED_TEXT_NARRATIVE("redactedTextNarrative"), + HTML_NARRATIVE("htmlNarrative"), + REDACTED_HTML_NARRATIVE("redactedHtmlNarrative"); + + private String _key; + + EventNarrativeOption(String key) + { + _key = key; + } + + public String getKey() + { + return _key; + } +} diff --git a/snd/api-src/org/labkey/api/snd/EventNote.java b/snd/api-src/org/labkey/api/snd/EventNote.java new file mode 100644 index 000000000..f13a99d60 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/EventNote.java @@ -0,0 +1,41 @@ +package org.labkey.api.snd; + +public class EventNote +{ + private Integer _eventId; + private String _note; + private Integer _eventNoteId; + private String _container; + + public static final String EVENT_ID = "eventId"; + public static final String NOTE = "note"; + public static final String EVENT_NOTE_ID = "eventNoteId"; + public static final String CONTAINER = "Container"; + + public EventNote(Integer eventId, String note, Integer eventNoteId) { + _eventId = eventId; + _note = note; + _eventNoteId = eventNoteId; + } + + public EventNote () {} + + public Integer getEventId() + { + return _eventId; + } + + public void setEventId(Integer eventId) + { + _eventId = eventId; + } + + public String getNote() { return _note; } + + public void setNote(String note) { _note = note; } + + public Integer getEventNoteId() { return _eventNoteId; } + + public void setEventNoteId(Integer eventNoteId) { _eventNoteId = eventNoteId; } + +} diff --git a/snd/api-src/org/labkey/api/snd/EventTrigger.java b/snd/api-src/org/labkey/api/snd/EventTrigger.java new file mode 100644 index 000000000..ed3f9d2e8 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/EventTrigger.java @@ -0,0 +1,33 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.labkey.api.data.Container; +import org.labkey.api.query.BatchValidationException; +import org.labkey.api.security.User; + +import java.util.List; +import java.util.Map; + +public interface EventTrigger +{ + void onInsert(Container c, User u, TriggerAction triggerAction, Map extraContext); + void onUpdate(Container c, User u, TriggerAction triggerAction, Map extraContext); + default Integer getOrder() + { + return null; + } +} diff --git a/snd/api-src/org/labkey/api/snd/EventTriggerFactory.java b/snd/api-src/org/labkey/api/snd/EventTriggerFactory.java new file mode 100644 index 000000000..ee80b96bb --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/EventTriggerFactory.java @@ -0,0 +1,23 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.Nullable; + +public interface EventTriggerFactory +{ + @Nullable EventTrigger createTrigger(String category); +} diff --git a/snd/api-src/org/labkey/api/snd/Package.java b/snd/api-src/org/labkey/api/snd/Package.java new file mode 100644 index 000000000..7a42c45a7 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/Package.java @@ -0,0 +1,366 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONArray; +import org.json.JSONObject; +import org.labkey.api.collections.ArrayListMap; +import org.labkey.api.data.Container; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.security.User; + +import java.util.ArrayList; +import java.util.Comparator; +import java.util.Date; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.TreeMap; +import java.util.TreeSet; + +/** + * Created by marty on 8/4/2017. + * + * Class for package data and related methods. Used when saving, updating, deleting and getting a package + */ +public class Package +{ + private Integer _pkgId; + private String _description; + private String _narrative; + private boolean _repeatable; + private boolean _active; + private boolean _hasEvent; + private boolean _hasProject; + private Date _modified; // column will be used as a timestamp + private Map _categories = new HashMap<>(); + private List _attributes = new ArrayList<>(); + private List _subpackages = new ArrayList<>(); + private Map _extraFields = new HashMap<>(); + private Map _lookups = new TreeMap<>(); + private Integer _qcState; + private Integer _topLevelSuperPkgId; + + public static final String PKG_ID = "pkgId"; + public static final String PKG_DESCRIPTION = "description"; + public static final String PKG_ACTIVE = "active"; + public static final String PKG_REPEATABLE = "repeatable"; + public static final String PKG_TOPLEVEL_SUPERPKG = "superPkgId"; + public static final String PKG_QCSTATE = "qcState"; + public static final String PKG_NARRATIVE = "narrative"; + public static final String PKG_CONTAINER = "container"; + public static final String PKG_HASEVENT = "hasEvent"; + public static final String PKG_HASPROJECT = "hasProject"; + + public static final String PKG_CATEGORIES = "categories"; + public static final String PKG_ATTRIBUTES = "attributes"; + public static final String PKG_SUBPACKAGES = "subPackages"; + public static final String PKG_MODIFIED = "modified"; + + @Nullable + public Integer getPkgId() + { + return _pkgId; + } + + public void setPkgId(int pkgId) + { + _pkgId = pkgId; + } + + @Nullable + public String getDescription() + { + return _description; + } + + public void setDescription(String description) + { + _description = description; + } + + @Nullable + public String getNarrative() + { + return _narrative; + } + + public void setNarrative(String narrative) + { + _narrative = narrative; + } + + public boolean isRepeatable() + { + return _repeatable; + } + + public void setRepeatable(boolean repeatable) + { + _repeatable = repeatable; + } + + public boolean isActive() + { + return _active; + } + + public void setActive(boolean active) + { + _active = active; + } + + public boolean hasEvent() + { + return _hasEvent; + } + + public void setHasEvent(boolean hasEvent) + { + _hasEvent = hasEvent; + } + + public boolean hasProject() + { + return _hasProject; + } + + public void setHasProject(boolean hasProject) + { + _hasProject = hasProject; + } + + @NotNull + public Map getCategories() + { + return _categories; + } + + public void setCategories(@NotNull Map categories) + { + _categories = categories; + } + + @NotNull + public List getAttributes() + { + return _attributes; + } + + public void setAttributes(@NotNull List attributes) + { + _attributes = attributes; + } + + @NotNull + public List getSubpackages() + { + return _subpackages; + } + + public void setSubpackages(@NotNull List subpackages) + { + _subpackages = subpackages; + } + + @NotNull + public Map getExtraFields() + { + return _extraFields; + } + + public void setExtraFields(@NotNull Map extraFields) + { + _extraFields = extraFields; + } + + @NotNull + public Map getLookups() + { + return _lookups; + } + + public void setLookups(@NotNull Map lookups) + { + _lookups = lookups; + } + + @Nullable + public Integer getQcState() + { + return _qcState; + } + + public void setQcState(Integer qcState) + { + _qcState = qcState; + } + + public Date getModified() + { + return _modified; + } + + public void setModified(Date modified) + { + _modified = modified; + } + + @Nullable + public Integer getTopLevelSuperPkgId() + { + return _topLevelSuperPkgId; + } + + public void setTopLevelSuperPkgId(Integer topLevelSuperPkgId) + { + _topLevelSuperPkgId = topLevelSuperPkgId; + } + + @NotNull + public Map getPackageRow(Container c) + { + Map pkgValues = new ArrayListMap<>(); + pkgValues.put(PKG_ID, getPkgId()); + pkgValues.put(PKG_NARRATIVE, getNarrative()); + pkgValues.put(PKG_DESCRIPTION, getDescription()); + pkgValues.put(PKG_ACTIVE, isActive()); + pkgValues.put(PKG_REPEATABLE, isRepeatable()); + pkgValues.put(PKG_QCSTATE, getQcState()); + pkgValues.put(PKG_CONTAINER, c); + pkgValues.put(PKG_MODIFIED, getModified()); + + Map extras = getExtraFields(); + for (GWTPropertyDescriptor gpd : extras.keySet()) + { + pkgValues.put(gpd.getName(), extras.get(gpd)); + } + + return pkgValues; + } + + @NotNull + public List> getCategoryRows(Container c) + { + List> rows = new ArrayList<>(); + Map row; + + for (Integer categoryId : getCategories().keySet()) + { + row = new ArrayListMap<>(); + row.put(PKG_ID, getPkgId()); + row.put("categoryId", categoryId); + row.put(PKG_CONTAINER, c); + rows.add(row); + } + + return rows; + } + + @NotNull + public JSONArray attributesToJson(Container c, User u) + { + JSONArray attributes = new JSONArray(); + if(getAttributes() != null) + { + for (GWTPropertyDescriptor pd : getAttributes()) + { + attributes.put(SNDService.get().convertPropertyDescriptorToJson(c, u, pd, true)); + } + } + + return attributes; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + json.put(PKG_ID, getPkgId()); + json.put(PKG_DESCRIPTION, getDescription()); + json.put(PKG_REPEATABLE, isRepeatable()); + json.put(PKG_ACTIVE, isActive()); + json.put(PKG_NARRATIVE, getNarrative()); + json.put(PKG_HASEVENT, hasEvent()); + json.put(PKG_HASPROJECT, hasProject()); + json.put(PKG_QCSTATE, getQcState()); + json.put(PKG_TOPLEVEL_SUPERPKG, getTopLevelSuperPkgId()); + json.put(PKG_CONTAINER, c.getId()); + json.put(PKG_MODIFIED, getModified()); + + JSONArray categories = new JSONArray(); + + for (Integer categoryId : getCategories().keySet()) + { + categories.put(categoryId); + } + json.put(PKG_CATEGORIES, categories); + + + if (getAttributes() != null) + { + json.put(PKG_ATTRIBUTES, attributesToJson(c, u)); + } + + JSONArray subPackages = new JSONArray(); + if(getSubpackages() != null) + { + for (SuperPackage subPackage : getSubpackages()) + { + subPackages.put(subPackage.toJSON(c, u)); + } + json.put(PKG_SUBPACKAGES, subPackages); + } + + JSONArray extras = new JSONArray(); + Map extraFields = getExtraFields(); + if(extraFields != null) + { + JSONObject jsonExtra; + Set keys = new TreeSet<>( + Comparator.comparing(GWTPropertyDescriptor::getName) + ); + keys.addAll(extraFields.keySet()); + for (GWTPropertyDescriptor extraPd : keys) + { + jsonExtra = SNDService.get().convertPropertyDescriptorToJson(c, u, extraPd, true); + jsonExtra.put("value", extraFields.get(extraPd)); + extras.put(jsonExtra); + } + + json.put("extraFields", extras); + } + + JSONArray lookups = new JSONArray(); + Map lookupMap = getLookups(); + + JSONObject jsonLookup; + for (String key : lookupMap.keySet()) + { + jsonLookup = new JSONObject(); + jsonLookup.put("value", key); + jsonLookup.put("label", lookupMap.get(key)); + lookups.put(jsonLookup); + } + + json.put("attributeLookups", lookups); + + return json; + } +} diff --git a/snd/api-src/org/labkey/api/snd/PackageDomainKind.java b/snd/api-src/org/labkey/api/snd/PackageDomainKind.java new file mode 100644 index 000000000..ae8cca691 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/PackageDomainKind.java @@ -0,0 +1,91 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.labkey.api.data.Container; +import org.labkey.api.data.ContainerType; +import org.labkey.api.exp.XarContext; +import org.labkey.api.exp.XarFormatException; +import org.labkey.api.exp.xar.LsidUtils; +import org.labkey.api.module.SimpleModule; +import org.labkey.api.query.ExtendedTableDomainKind; +import org.labkey.api.security.User; +import org.labkey.api.security.permissions.AdminPermission; + +/** + * Created by marty on 8/14/2017. + */ +public class PackageDomainKind extends ExtendedTableDomainKind +{ + private static final String NAMESPACE_PREFIX = "package"; + private static final String SCHEMA_NAME = "snd"; + private static final String KIND_NAME = "Package"; + + private static final String DOMAIN_NAMESPACE_PREFIX_TEMPLATE = NAMESPACE_PREFIX + "-${SchemaName}"; + + @Override + public boolean canCreateDefinition(User user, Container container) + { + return container.hasPermission("PackageDomainKind.canCreateDefinition", user, AdminPermission.class); + } + + @Override + public String generateDomainURI(String schemaName, String tableName, Container c, User u) + { + return getDomainURI(schemaName, tableName, c, u); + } + + public static String getDomainURI(String schemaName, String tableName, Container c, User u) + { + try + { + XarContext xc = getXarContext(schemaName, tableName, c.getContainerFor(ContainerType.DataType.domainDefinitions), u); + return LsidUtils.resolveLsidFromTemplate(SimpleModule.DOMAIN_LSID_TEMPLATE, xc, DOMAIN_NAMESPACE_PREFIX_TEMPLATE); + } + catch (XarFormatException xfe) + { + return null; + } + } + + @Override + protected String getSchemaName() + { + return getPackageSchemaName(); + } + + public static String getPackageSchemaName() + { + return SCHEMA_NAME; + } + + @Override + protected String getNamespacePrefix() + { + return NAMESPACE_PREFIX; + } + + @Override + public String getKindName() + { + return getPackageKindName(); + } + + public static String getPackageKindName() + { + return KIND_NAME; + } +} diff --git a/snd/api-src/org/labkey/api/snd/PlainTextNarrativeDisplayColumn.java b/snd/api-src/org/labkey/api/snd/PlainTextNarrativeDisplayColumn.java new file mode 100644 index 000000000..9f4687ac2 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/PlainTextNarrativeDisplayColumn.java @@ -0,0 +1,63 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.labkey.api.data.ColumnInfo; +import org.labkey.api.data.DataColumn; +import org.labkey.api.data.RenderContext; +import org.labkey.api.util.HtmlString; + +public class PlainTextNarrativeDisplayColumn extends DataColumn +{ + public PlainTextNarrativeDisplayColumn(ColumnInfo col) + { + super(col); + } + + @Override + public HtmlString getFormattedHtml(RenderContext ctx) + { + String htmlNarrative = (String)ctx.get(getColumnInfo().getFieldKey()); + return HtmlString.of(removeHtmlTagsFromNarrative(htmlNarrative)); + } + + @Override + public Object getDisplayValue(RenderContext ctx) + { + String htmlNarrative = (String)ctx.get(getColumnInfo().getFieldKey()); + return removeHtmlTagsFromNarrative(htmlNarrative); + } + + public static String removeHtmlTagsFromNarrative(String htmlNarrative) + { + String textNarrative; + + if (htmlNarrative != null && !htmlNarrative.isEmpty()) + { + // first crudely change these three tags to newlines + textNarrative = htmlNarrative.replace("
", "\n"); + textNarrative = textNarrative.replace("
", "\n"); + textNarrative = textNarrative.replace("
", "\n"); + textNarrative = textNarrative.replace(" ", "\s\s\s\s"); + // then crudely remove all other HTML open/close tags, or things that look like them + textNarrative = textNarrative.replaceAll("\\<.*?\\>", ""); + } + else + textNarrative = ""; + + return textNarrative; + } +} diff --git a/snd/api-src/org/labkey/api/snd/Project.java b/snd/api-src/org/labkey/api/snd/Project.java new file mode 100644 index 000000000..c71cf534c --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/Project.java @@ -0,0 +1,383 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONArray; +import org.json.JSONObject; +import org.labkey.api.collections.ArrayListMap; +import org.labkey.api.data.Container; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.security.User; +import org.labkey.api.util.DateUtil; +import org.labkey.api.util.GUID; + +import java.util.ArrayList; +import java.util.Comparator; +import java.util.Date; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.TreeSet; + +/** + * Created by marty on 8/4/2017. + * + * Class for project data and related methods. Used when saving, updating, deleting and getting a project + */ + +public class Project +{ + private int _projectId = -1; + private int _revisionNum; + private String _objectId; + private Date _startDate; + private Date _endDate; + private String _description; + private boolean _active; + private int _referenceId; + private boolean _hasEvent; + private boolean _copyRevisedPkgs; + private Date _endDateRevised; + private List _projectItems = new ArrayList<>(); + private Map _extraFields = new HashMap<>(); + + private String _container; + private String _revisedObjectId; + private Integer _revisedRevNum; + + public static final String PROJECT_ID = "projectId"; + public static final String PROJECT_DESCRIPTION = "description"; + public static final String PROJECT_ACTIVE = "active"; + public static final String PROJECT_STARTDATE = "startDate"; + public static final String PROJECT_ENDDATE = "endDate"; + public static final String PROJECT_OBJECTID = "objectId"; + public static final String PROJECT_CONTAINER = "container"; + public static final String PROJECT_REVNUM = "revisionNum"; + public static final String PROJECT_REFID = "referenceId"; + public static final String PROJECT_ITEMS = "projectItems"; + + public static final String PROJECT_HASEVENT = "hasEvent"; + + public Project (int id, @Nullable Integer revNum, boolean edit, boolean revision, @NotNull Container c) + { + _projectId = ((edit || revision) ? id : SNDSequencer.PROJECTID.ensureId(c, id)); + _objectId = ((edit || revision) ? null : GUID.makeGUID()); + _revisionNum = ((edit || revision) ? revNum : 0); + + if (revision) + { + _revisedObjectId = GUID.makeGUID(); + _revisedRevNum = ++revNum; + } + } + + public Project () {} + + public int getProjectId() + { + return _projectId; + } + + public void setProjectId(int projectId) + { + _projectId = projectId; + } + + public int getReferenceId() + { + return _referenceId; + } + + public void setReferenceId(int refId) + { + _referenceId = refId; + } + + @Nullable + public String getContainer() + { + return _container; + } + + public void setContainer(String container) + { + _container = container; + } + + public int getRevisionNum() + { + return _revisionNum; + } + + public void setRevisionNum(int revisionNum) + { + _revisionNum = revisionNum; + } + + @Nullable + public String getObjectId() + { + return _objectId; + } + + public void setObjectId(String objectId) + { + _objectId = objectId; + } + + public void updateObjectId(String objectId) + { + setObjectId(objectId); + for (ProjectItem projectItem : _projectItems) + { + projectItem.setParentObjectId(objectId); + } + } + + @Nullable + public String getRevisedObjectId() + { + return _revisedObjectId; + } + + public void setRevisedObjectId(String revisedObjectId) + { + _revisedObjectId = revisedObjectId; + } + + @Nullable + public Integer getRevisedRevNum() + { + return _revisedRevNum; + } + + public void setRevisedRevNum(Integer revisedRevNum) + { + _revisedRevNum = revisedRevNum; + } + + @Nullable + public Date getStartDate() + { + return _startDate; + } + + @Nullable + public String startDateToString() + { + return DateUtil.formatDateISO8601(getStartDate()); + } + + public void setStartDate(Date startDate) + { + _startDate = startDate; + } + + @Nullable + public Date getEndDate() + { + return _endDate; + } + + @Nullable + public String endDateToString() + { + return DateUtil.formatDateISO8601(getEndDate()); + } + + public void setEndDate(Date endDate) + { + _endDate = endDate; + } + + @Nullable + public String getDescription() + { + return _description; + } + + public void setDescription(String description) + { + _description = description; + } + + public boolean isActive() + { + return _active; + } + + public void setActive(boolean active) + { + _active = active; + } + + public boolean hasEvent() + { + return _hasEvent; + } + + public void setHasEvent(boolean hasEvent) + { + _hasEvent = hasEvent; + } + + public boolean isCopyRevisedPkgs() + { + return _copyRevisedPkgs; + } + + public void setCopyRevisedPkgs(boolean copyRevisedPkgs) + { + _copyRevisedPkgs = copyRevisedPkgs; + } + + @Nullable + public Date getEndDateRevised() + { + return _endDateRevised; + } + + public void setEndDateRevised(Date endDateRevised) + { + _endDateRevised = endDateRevised; + } + + @NotNull + public List getProjectItems() + { + return _projectItems; + } + + public void setProjectItems(@NotNull List subpackages) + { + _projectItems = subpackages; + } + + @NotNull + public Map getExtraFields() + { + return _extraFields; + } + + public void setExtraFields(@NotNull Map extraFields) + { + _extraFields = extraFields; + } + + @NotNull + public Map getProjectRow(Container c) + { + Map projectValues = new ArrayListMap<>(); + projectValues.put(PROJECT_ID, getProjectId()); + projectValues.put(PROJECT_OBJECTID, getObjectId()); + projectValues.put(PROJECT_REVNUM, getRevisionNum()); + projectValues.put(PROJECT_DESCRIPTION, getDescription()); + projectValues.put(PROJECT_ACTIVE, isActive()); + projectValues.put(PROJECT_STARTDATE, getStartDate()); + projectValues.put(PROJECT_ENDDATE, getEndDate()); + projectValues.put(PROJECT_REFID, getReferenceId()); + projectValues.put(PROJECT_CONTAINER, c); + + Map extras = getExtraFields(); + for (GWTPropertyDescriptor gpd : extras.keySet()) + { + projectValues.put(gpd.getName(), extras.get(gpd)); + } + + return projectValues; + } + + @NotNull + public List> getProjectItemRows(Container c) + { + List> rows = new ArrayList<>(); + + for (ProjectItem projectItem : getProjectItems()) + { + rows.add(projectItem.getRow(c)); + } + + return rows; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + json.put(PROJECT_ID, getProjectId()); + json.put(PROJECT_DESCRIPTION, getDescription()); + json.put(PROJECT_ACTIVE, isActive()); + json.put(PROJECT_STARTDATE, startDateToString()); + json.put(PROJECT_REVNUM, getRevisionNum()); + json.put(PROJECT_REFID, getReferenceId()); + json.put(PROJECT_HASEVENT, hasEvent()); + if (getEndDate() != null) + json.put(PROJECT_ENDDATE, endDateToString()); + + if (getProjectItems().size() > 0) + { + JSONArray jsonProjectItems = new JSONArray(); + for (ProjectItem projectItem : getProjectItems()) + { + jsonProjectItems.put(projectItem.toJSON(c, u)); + } + json.put(PROJECT_ITEMS, jsonProjectItems); + } + + JSONArray extras = new JSONArray(); + Map extraFields = getExtraFields(); + if(extraFields.size() > 0) + { + JSONObject jsonExtra; + Set keys = new TreeSet<>( + Comparator.comparing(GWTPropertyDescriptor::getName) + ); + keys.addAll(extraFields.keySet()); + for (GWTPropertyDescriptor extraPd : keys) + { + jsonExtra = SNDService.get().convertPropertyDescriptorToJson(c, u, extraPd, true); + jsonExtra.put("value", extraFields.get(extraPd)); + extras.put(jsonExtra); + } + + json.put("extraFields", extras); + } + + return json; + } + + @NotNull + public Map toShallowMap(Container c, User u) + { + Map map = new ArrayListMap<>(); + + map.put(PROJECT_ID, getProjectId()); + map.put(PROJECT_DESCRIPTION, getDescription()); + map.put(PROJECT_ACTIVE, isActive()); + map.put(PROJECT_STARTDATE, startDateToString()); + map.put(PROJECT_REVNUM, getRevisionNum()); + map.put(PROJECT_REFID, getReferenceId()); + map.put(PROJECT_HASEVENT, hasEvent()); + if (getEndDate() != null) + map.put(PROJECT_ENDDATE, endDateToString()); + map.put(PROJECT_OBJECTID, getObjectId()); + + return map; + } +} diff --git a/snd/api-src/org/labkey/api/snd/ProjectItem.java b/snd/api-src/org/labkey/api/snd/ProjectItem.java new file mode 100644 index 000000000..c1af1e081 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/ProjectItem.java @@ -0,0 +1,154 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONObject; +import org.labkey.api.collections.ArrayListMap; +import org.labkey.api.data.Container; +import org.labkey.api.security.User; + +import java.util.Map; +import java.util.Objects; + +/** + * Created by marty on 8/4/2017. + * + * Class for project item data and related methods. Used in project class. + */ +public class ProjectItem +{ + boolean _active; + int _projectItemId; + int _superPkgId; + String _parentObjectId; + String _container; + SuperPackage _superPackage; + + public static final String PROJECTITEM_ID = "projectItemId"; + public static final String PROJECTITEM_PARENTOBJECTID = "parentObjectId"; + public static final String PROJECTITEM_ACTIVE = "active"; + public static final String PROJECTITEM_CONTAINER = "container"; + public static final String PROJECTITEM_SUPERPKGID = "superPkgId"; + public static final String PROJECTITEM_SUPERPKG = "superPkg"; + + public int getProjectItemId() + { + return _projectItemId; + } + + public void setProjectItemId(int projectItemId) + { + _projectItemId = projectItemId; + } + + public boolean isActive() + { + return _active; + } + + public void setActive(boolean active) + { + _active = active; + } + + public int getSuperPkgId() + { + return _superPkgId; + } + + public void setSuperPkgId(int superPkgId) + { + _superPkgId = superPkgId; + } + + @Nullable + public String getParentObjectId() + { + return _parentObjectId; + } + + public void setParentObjectId(String parentObjectId) + { + _parentObjectId = parentObjectId; + } + + @Nullable + public String getContainer() + { + return _container; + } + + public void setContainer(String container) + { + _container = container; + } + + @Nullable + public SuperPackage getSuperPackage() + { + return _superPackage; + } + + public void setSuperPackage(SuperPackage superPackage) + { + _superPackage = superPackage; + } + + @NotNull + public Map getRow(Container c) + { + Map projectItemValues = new ArrayListMap<>(); + projectItemValues.put(PROJECTITEM_ID, getProjectItemId()); + projectItemValues.put(PROJECTITEM_PARENTOBJECTID, getParentObjectId()); + projectItemValues.put(PROJECTITEM_SUPERPKGID, getSuperPkgId()); + projectItemValues.put(PROJECTITEM_ACTIVE, isActive()); + projectItemValues.put(PROJECTITEM_CONTAINER, c); + + return projectItemValues; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + json.put(PROJECTITEM_ID, getProjectItemId()); + json.put(PROJECTITEM_ACTIVE, isActive()); + json.put(PROJECTITEM_SUPERPKG, getSuperPackage().toJSON(c, u)); + + return json; + } + + @Override + public boolean equals(Object o) + { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + ProjectItem that = (ProjectItem) o; + return _active == that._active && + _projectItemId == that._projectItemId && + _superPkgId == that._superPkgId && + Objects.equals(_parentObjectId, that._parentObjectId) && + Objects.equals(_container, that._container); + } + + @Override + public int hashCode() + { + return Objects.hash(_active, _projectItemId, _superPkgId, _parentObjectId, _container); + } +} diff --git a/snd/api-src/org/labkey/api/snd/QCStateEnum.java b/snd/api-src/org/labkey/api/snd/QCStateEnum.java new file mode 100644 index 000000000..2aa98205b --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/QCStateEnum.java @@ -0,0 +1,81 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.Nullable; + +public enum QCStateEnum +{ + COMPLETED("Completed", "Record has been completed and is public", true), + REJECTED("Rejected", "Record has been reviewed and rejected", false), + REVIEW_REQUIRED("Review Required", "Review is required prior to public release", false), + IN_PROGRESS("In Progress", "Draft Record, not public", false); + + private String _name; + private String _description; + private boolean _publicData; + + QCStateEnum(String name, String description, boolean publicData) + { + _name = name; + _description = description; + _publicData = publicData; + } + + public String getName() + { + return _name; + } + + public void setName(String name) + { + _name = name; + } + + public String getDescription() + { + return _description; + } + + public void setDescription(String description) + { + _description = description; + } + + public boolean isPublicData() + { + return _publicData; + } + + public void setPublicData(boolean publicData) + { + _publicData = publicData; + } + + @Nullable + public static QCStateEnum getByName(String name) + { + for (QCStateEnum qcStateEnum : QCStateEnum.values()) + { + if (qcStateEnum.getName().equals(name)) + { + return qcStateEnum; + } + } + + return null; + } +} diff --git a/snd/api-src/org/labkey/api/snd/SNDDomainKind.java b/snd/api-src/org/labkey/api/snd/SNDDomainKind.java new file mode 100644 index 000000000..d7c57a078 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/SNDDomainKind.java @@ -0,0 +1,116 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.labkey.api.data.CompareType; +import org.labkey.api.data.Container; +import org.labkey.api.data.CoreSchema; +import org.labkey.api.data.SQLFragment; +import org.labkey.api.data.dialect.SqlDialect; +import org.labkey.api.exp.property.Domain; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.query.ExtendedTableDomainKind; +import org.labkey.api.security.User; +import org.labkey.api.security.permissions.AdminPermission; +import org.labkey.api.settings.AppProps; +import org.labkey.data.xml.domainTemplate.DomainTemplateType; +import org.labkey.data.xml.domainTemplate.SNDTemplateType; + +import java.util.HashSet; +import java.util.List; +import java.util.Set; + +/** + * Created by marty on 7/11/2017. + */ +public class SNDDomainKind extends ExtendedTableDomainKind +{ + private final String NAMESPACE_PREFIX = "snd"; + private final String SCHEMA_NAME = "snd"; + private final String KIND_NAME = "SND"; + + + @Override + public boolean canCreateDefinition(User user, Container container) + { + return container.hasPermission("SNDDomainKind.canCreateDefinition", user, AdminPermission.class); + } + + @Override + protected String getSchemaName() + { + return SCHEMA_NAME; + } + + @Override + protected String getNamespacePrefix() + { + return NAMESPACE_PREFIX; + } + + @Override + public String getKindName() + { + return KIND_NAME; + } + + @Override + public boolean ensurePropertyLookup() + { + return true; + } + + @Override + public Set getReservedPropertyNames(Domain domain, User user) + { + Set result = new HashSet<>(); + result.add("Description"); + result.add("Active"); + result.add("ObjectId"); + result.add("QcState"); + result.add("Container"); + result.add("CreatedBy"); + result.add("Created"); + result.add("ModifiedBy"); + result.add("Modified"); + return result; + } + + @Override + public boolean matchesTemplateXML(String templateName, DomainTemplateType template, List properties) + { + return template instanceof SNDTemplateType; + } + + + public static String formatSndDomainURI(int containerRowId, int packageId) + { + return String.format("urn:lsid:%s:package-snd.Folder-%d:Package-%d", + AppProps.getInstance().getDefaultLsidAuthority(), + containerRowId, + packageId); + } + + public static SQLFragment likeSndDomainURI(Integer containerRowId, Integer packageId) + { + String pattern = String.format("urn:lsid:%s:package-snd.Folder-%s:Package-%s", + CompareType.escapeLikePattern(AppProps.getInstance().getDefaultLsidAuthority(), '!'), + null==containerRowId ? "%" : Integer.toString(containerRowId), + null==packageId ? "%" : Integer.toString(packageId) + ); + return new SQLFragment("LIKE ").appendValue(pattern).append(" ESCAPE '!'"); + } +} diff --git a/snd/api-src/org/labkey/api/snd/SNDSequencer.java b/snd/api-src/org/labkey/api/snd/SNDSequencer.java new file mode 100644 index 000000000..94d1a1e94 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/SNDSequencer.java @@ -0,0 +1,57 @@ +/* + * Copyright (c) 2017-2019 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.labkey.api.data.Container; +import org.labkey.api.data.DbSequence; +import org.labkey.api.data.DbSequenceManager; + +public enum SNDSequencer +{ + PKGID ("org.labkey.snd.api.Package", 10000), + SUPERPKGID ("org.labkey.snd.api.SuperPackage", 10000), + CATEGORYID ("org.labkey.snd.api.Categories", 100), + PROJECTID ("org.labkey.snd.api.Project", 10000), + PROJECTITEMID ("org.labkey.snd.api.ProjectItem", 30000), + EVENTID ("org.labkey.snd.api.Event", 2000000), + EVENTDATAID ("org.labkey.snd.api.EventData", 5000000); + + private String sequenceName; + private int minId; + + SNDSequencer(String name, int id) + { + sequenceName = name; + minId = id; + } + + private int generateId(Container c) + { + DbSequence sequence = DbSequenceManager.get(c, sequenceName); + sequence.ensureMinimum(minId); + return Math.toIntExact(sequence.next()); + } + + public Integer ensureId(Container container, Integer id) + { + if (id == null || id >= minId || id < 0) + { + return generateId(container); + } + + return id; + } +} diff --git a/snd/api-src/org/labkey/api/snd/SNDService.java b/snd/api-src/org/labkey/api/snd/SNDService.java new file mode 100644 index 000000000..c601108fc --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/SNDService.java @@ -0,0 +1,77 @@ +/* + * Copyright (c) 2017-2019 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.apache.logging.log4j.Logger; +import org.jetbrains.annotations.Nullable; +import org.json.JSONObject; +import org.labkey.api.data.Container; +import org.labkey.api.data.SimpleFilter; +import org.labkey.api.dataiterator.DataIteratorBuilder; +import org.labkey.api.dataiterator.DataIteratorContext; +import org.labkey.api.gwt.client.model.GWTPropertyDescriptor; +import org.labkey.api.module.Module; +import org.labkey.api.security.User; +import org.labkey.api.services.ServiceRegistry; + +import java.io.IOException; +import java.util.ArrayList; +import java.util.Date; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.concurrent.locks.Lock; + +/** + * Created by marty on 8/4/2017. + */ +public interface SNDService +{ + @Nullable + static SNDService get() + { + return ServiceRegistry.get(SNDService.class); + } + + void savePackage(Container c, User u, Package pkg); + void savePackage(Container c, User u, Package pkg, SuperPackage superPkg, boolean cloneFlag); + void savePackage(Container c, User u, Package pkg, SuperPackage superPkg, boolean cloneFlag, boolean isPipelineJob); + void saveSuperPackages(Container c, User u, List superPkgs); + List getPackages(Container c, User u, List pkgIds, boolean includeExtraFields, boolean includeLookups, boolean includeFullSubpackages); + void registerAttributeLookup(Container c, User u, String schema, @Nullable String table); + Map getAttributeLookups(Container c, User u); + Object getDefaultLookupDisplayValue(User u, Container c, String schema, String table, Object key); + void saveProject(Container c, User u, Project project, boolean isRevision); + Project getProject(Container c, User u, int projectId, int revNum); + Event saveEvent(Container c, User u, Event event, boolean validateOnly); + Event getEvent(Container c, User u, int eventId, @Nullable Set narrativeOptions); + JSONObject convertPropertyDescriptorToJson(Container c, User u, GWTPropertyDescriptor pd, boolean resolveLookupValues); + Object normalizeLookupValue(User u, Container c, String schema, String table, Object display); + void registerEventTriggerFactory(Module module, EventTriggerFactory factory); + void unregisterEventTriggerFactory(Module module); + Lock getWriteLock(); + List> getMutableData(DataIteratorBuilder rows, DataIteratorContext dataIteratorContext) throws IOException; + void fillInNarrativeCache(Container c, User u, Logger logger); + void clearNarrativeCache(Container c, User u); + void deleteNarrativeCacheRows(Container c, User u, List> eventIds); + void populateNarrativeCache(Container c, User u, List eventIds, Logger logger, boolean isFullReload); + Map getAllCategories(Container c, User u); + Integer getQCStateId(Container c, User u, QCStateEnum qcState); + QCStateEnum getQCState(Container c, User u, int qcStateId); + List> getActiveProjects(Container c, User u, ArrayList filters, Boolean activeProjectItemsOnly, Date eventDate); + List> getActiveProjects(Container c, User u, ArrayList filters, Boolean activeProjectItemsOnly); + List> getActiveProjects(Container c, User u, ArrayList filters); +} diff --git a/snd/api-src/org/labkey/api/snd/SuperPackage.java b/snd/api-src/org/labkey/api/snd/SuperPackage.java new file mode 100644 index 000000000..2bf9cd95b --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/SuperPackage.java @@ -0,0 +1,264 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + +import org.jetbrains.annotations.NotNull; +import org.jetbrains.annotations.Nullable; +import org.json.JSONArray; +import org.json.JSONObject; +import org.labkey.api.collections.ArrayListMap; +import org.labkey.api.data.Container; +import org.labkey.api.security.User; + +import java.util.ArrayList; +import java.util.List; +import java.util.Map; +import java.util.function.Function; + +import static org.labkey.api.snd.Package.PKG_ATTRIBUTES; + +/** + * Created by marty on 8/14/2017. + * + * Class for holding super package data and methods. Used when saving, updating, getting and deleting super packages + */ +public class SuperPackage +{ + private Integer _superPkgId; + private List _childPackages; + private Integer _pkgId; + private Package _pkg; + private String _superPkgPath; + private String _treePath; + private Integer _parentSuperPkgId; + private Integer _topLevelPkgId; + private String _description; // From referenced package + private String _narrative; // From referenced package + private Integer _sortOrder; + private Boolean _repeatable; + private boolean _required; + // NOTE: if you add a variable here, add it to the copy constructor, getSuperPackageRow(), and toJson() too! + + public static final String SUPERPKG_ID = "superPkgId"; + public static final String SUPERPKG_PARENTID = "parentSuperPkgId"; + public static final String SUPERPKG_TOP_LEVEL_PKGID = "topLevelPkgId"; + public static final String SUPERPKG_PKGID = "pkgId"; + public static final String SUPERPKG_DESCRIPTION = "description"; + public static final String SUPERPKG_NARRATIVE = "narrative"; + public static final String SUPERPKG_ORDER = "sortOrder"; + public static final String SUPERPKG_REPEATABLE = "repeatable"; + public static final String SUPERPKG_PATH = "superPkgPath"; + public static final String SUPERPKG_TREEPATH = "treePath"; + public static final String SUPERPKG_REQUIRED = "required"; + public static final String SUPERPKG_PKGID_CSS_CLASS = "snd-superpkg-pkg-id"; + + public SuperPackage() + { + + } + + // copy constructor + public SuperPackage(SuperPackage _superPackage) + { + _superPkgId = _superPackage.getSuperPkgId(); // Integers are immutable + _childPackages = new ArrayList<>(); + List childPackages = _superPackage.getChildPackages(); + if (childPackages != null) + { + for (SuperPackage childPackage : _superPackage.getChildPackages()) + _childPackages.add(new SuperPackage(childPackage)); + } + _pkgId = _superPackage.getPkgId(); + _superPkgId = _superPackage.getSuperPkgId(); // Strings are also immutable + _parentSuperPkgId = _superPackage.getParentSuperPkgId(); + _description = _superPackage.getDescription(); + _narrative = _superPackage.getNarrative(); + _sortOrder = _superPackage.getSortOrder(); + _repeatable = _superPackage.getRepeatable(); + _required = _superPackage.getRequired(); + } + + @Nullable + public Integer getParentSuperPkgId() + { + return _parentSuperPkgId; + } + + public void setParentSuperPkgId(Integer parentSuperPkgId) + { + _parentSuperPkgId = parentSuperPkgId; + } + + @Nullable + public Integer getTopLevelPkgId() { return _topLevelPkgId; } + + public void setTopLevelPkgId(Integer topLevelPkgId) { _topLevelPkgId = topLevelPkgId; } + + @Nullable + public List getChildPackages() + { + return _childPackages; + } + + @Nullable + public Integer getSortOrder() + { + return _sortOrder; + } + + public void setSortOrder(Integer sortOrder) + { + _sortOrder = sortOrder; + } + + @Nullable + public String getDescription() + { + return _description; + } + + public void setDescription(String description) + { + _description = description; + } + + @Nullable + public Boolean getRepeatable() { return _repeatable; } + + public void setRepeatable(Boolean repeatable) { _repeatable = repeatable; } + + @Nullable + public String getNarrative() + { + return _narrative; + } + + public void setNarrative(String narrative) + { + _narrative = narrative; + } + + public void setChildPackages(List childPackages) + { + _childPackages = childPackages; + } + + @Nullable + public String getSuperPkgPath() + { + return _superPkgPath; + } + + public void setSuperPkgPath(String superPkgPath) + { + _superPkgPath = superPkgPath; + } + + @Nullable + public String getTreePath() { return _treePath; } + + public void setTreePath(String treePath) { _treePath = treePath; } + + @Nullable + public Integer getSuperPkgId() + { + return _superPkgId; + } + + public void setSuperPkgId(Integer superPkgId) + { + _superPkgId = superPkgId; + } + + @Nullable + public Integer getPkgId() + { + return _pkgId; + } + + public void setPkgId(Integer pkgId) + { + _pkgId = pkgId; + } + + @Nullable + public Package getPkg() + { + return _pkg; + } + + public void setPkg(Package pkg) + { + _pkg = pkg; + } + + public boolean getRequired() + { + return _required; + } + + public void setRequired(boolean required) + { + _required = required; + } + + @NotNull + public Map getSuperPackageRow(Container c) + { + Map superPkgValues = new ArrayListMap<>(); + superPkgValues.put(SUPERPKG_ID, getSuperPkgId()); + superPkgValues.put(SUPERPKG_PARENTID, getParentSuperPkgId()); + superPkgValues.put(SUPERPKG_PKGID, getPkgId()); + superPkgValues.put(SUPERPKG_ORDER, getSortOrder()); + superPkgValues.put(SUPERPKG_REPEATABLE, getRepeatable()); + superPkgValues.put("container", c); + superPkgValues.put(SUPERPKG_PATH, getSuperPkgPath()); + superPkgValues.put(SUPERPKG_REQUIRED, getRequired()); + superPkgValues.put(SUPERPKG_TREEPATH, getTreePath()); + superPkgValues.put(SUPERPKG_TOP_LEVEL_PKGID, getTopLevelPkgId()); + + return superPkgValues; + } + + @NotNull + public JSONObject toJSON(Container c, User u) + { + JSONObject json = new JSONObject(); + json.put(SUPERPKG_ID, getSuperPkgId()); + json.put(SUPERPKG_PKGID, getPkgId()); + json.put(SUPERPKG_DESCRIPTION, getDescription()); + json.put(SUPERPKG_NARRATIVE, getNarrative()); + json.put(SUPERPKG_ORDER, getSortOrder()); + json.put(SUPERPKG_REPEATABLE, getRepeatable()); + json.put(SUPERPKG_REQUIRED, getRequired()); + if (getPkg() != null) + { + json.put(PKG_ATTRIBUTES, getPkg().attributesToJson(c, u)); + } + + JSONArray subPackages = new JSONArray(); + if (getChildPackages() != null) + { + for (SuperPackage subPackage : getChildPackages()) + { + subPackages.put(subPackage.toJSON(c, u)); + } + } + + json.put("subPackages", subPackages); + return json; + } +} diff --git a/snd/api-src/org/labkey/api/snd/TriggerAction.java b/snd/api-src/org/labkey/api/snd/TriggerAction.java new file mode 100644 index 000000000..b5a8c7446 --- /dev/null +++ b/snd/api-src/org/labkey/api/snd/TriggerAction.java @@ -0,0 +1,90 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.labkey.api.snd; + + +import org.jetbrains.annotations.NotNull; + +import java.util.Map; + +public class TriggerAction +{ + EventTrigger _trigger; + Event _event; + EventData _eventData; + Map _topLevelSuperPkgs; // Maps EventDataId to SuperPackage + SuperPackage _superPackage; + + public TriggerAction(@NotNull EventTrigger trigger, @NotNull Event event, @NotNull EventData eventData, + @NotNull SuperPackage superPackage, @NotNull Map topLevelPkgs) + { + _trigger = trigger; + _event = event; + _eventData = eventData; + _topLevelSuperPkgs = topLevelPkgs; + _superPackage = superPackage; + } + + public EventTrigger getTrigger() + { + return _trigger; + } + + public void setTrigger(EventTrigger trigger) + { + _trigger = trigger; + } + + public Event getEvent() + { + return _event; + } + + public void setEvent(Event event) + { + _event = event; + } + + public EventData getEventData() + { + return _eventData; + } + + public void setEventData(EventData eventData) + { + _eventData = eventData; + } + + public Map getTopLevelSuperPkgs() + { + return _topLevelSuperPkgs; + } + + public void setTopLevelSuperPkgs(Map topLevelSuperPkgsPkgs) + { + _topLevelSuperPkgs = topLevelSuperPkgsPkgs; + } + + public SuperPackage getSuperPackage() + { + return _superPackage; + } + + public void setSuperPackage(SuperPackage superPackage) + { + _superPackage = superPackage; + } +} \ No newline at end of file diff --git a/snd/build.gradle b/snd/build.gradle new file mode 100644 index 000000000..dbd9d7c43 --- /dev/null +++ b/snd/build.gradle @@ -0,0 +1,9 @@ +import org.labkey.gradle.util.BuildUtils; + +plugins { + id 'org.labkey.build.module' +} + +dependencies { + BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: BuildUtils.getPlatformModuleProjectPath(project.gradle, "experiment"), depProjectConfig: "published", depExtension: "module") +} diff --git a/snd/module.properties b/snd/module.properties new file mode 100644 index 000000000..91a49168e --- /dev/null +++ b/snd/module.properties @@ -0,0 +1,6 @@ +ModuleClass: org.labkey.snd.SNDModule +Label: Structured Narrative Datasets +Description: Dynamically defined hierarchical datasets. +License: Apache 2.0 +LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 +SupportedDatabases: mssql diff 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+ "node_modules/wrappy": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", + "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8=", + "dev": true + }, + "node_modules/xtend": { + "version": "4.0.1", + "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.1.tgz", + "integrity": "sha1-pcbVMr5lbiPbgg77lDofBJmNY68=", + "dev": true, + "engines": { + "node": ">=0.4" + } + }, + "node_modules/y18n": { + "version": "3.2.1", + "resolved": "https://registry.npmjs.org/y18n/-/y18n-3.2.1.tgz", + "integrity": "sha1-bRX7qITAhnnA136I53WegR4H+kE=", + "dev": true + }, + "node_modules/yallist": { + "version": "2.1.2", + "resolved": "https://registry.npmjs.org/yallist/-/yallist-2.1.2.tgz", + "integrity": "sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI=", + "dev": true + } + } +} diff --git a/snd/package.json b/snd/package.json new file mode 100644 index 000000000..df5e1f834 --- /dev/null +++ b/snd/package.json @@ -0,0 +1,100 @@ +{ + "name": "SND", + "version": "1.0.0", + "description": "Structured Narrative Datasets", + "scripts": { + "build": "better-npm-run build:prod", + "build-prod": "npm run build", + "build-style": "npm run build:style", + "clean": "better-npm-run clean", + "setup": "npm install", + "start": "better-npm-run build:style && better-npm-run build:watch" + }, + "betterScripts": { + "build:prod": { + "command": "webpack --config webpack/prod.config.js", + "env": { + "NODE_ENV": "production" + } + }, + "build:style": { + "command": "webpack --config webpack/dev-style.config.js", + "env": { + "NODE_ENV": "development" + } + }, + "build:watch": { + "command": "node webpack/dev-server.js", + "env": { + "NODE_ENV": "development" + } + }, + "clean": { + "command": "rimraf resources/web/snd/gen && rimraf resources/web/snd/app" + } + }, + "repository": { + "type": "svn", + "url": "https://github.com/LabKey" + }, + "author": "joshd@labkey.com", + "license": "ISC", + "bugs": {}, + "homepage": "https://github.com/LabKey", + "dependencies": { + "@types/react": "15.6.0", + "@types/react-bootstrap": "0.0.52", + "@types/react-dom": "15.5.1", + "@types/react-redux": "4.4.47", + "@types/react-router": "4.0.14", + "@types/react-router-dom": "4.0.7", + "@types/react-router-redux": "5.0.4", + "@types/redux-actions": "1.2.7", + "@types/redux-form": "6.6.2", + "babel-polyfill": "6.26.0", + "history": "4.6.3", + "merge": "1.2.1", + "prop-types": "15.5.10", + "react": "16.8.6", + "react-bootstrap": "0.31.1", + "react-dom": "16.8.6", + "react-redux": "5.0.5", + "react-router": "4.1.2", + "react-router-dom": "4.1.2", + "react-router-redux": "5.0.0-alpha.6", + "redux": "3.7.2", + "redux-actions": "2.2.1", + "redux-form": "6.8.0", + "redux-thunk": "2.2.0" + }, + "devDependencies": { + "@types/enzyme": "2.8.4", + "@types/react-test-renderer": "15.5.2", + "@types/redux-mock-store": "0.0.9", + "babel-core": "6.25.0", + "babel-loader": "7.1.1", + "babel-plugin-react-transform": "2.0.2", + "babel-plugin-transform-es2015-modules-commonjs": "6.24.1", + "babel-preset-env": "1.7.0", + "babel-preset-react": "6.24.1", + "babel-preset-react-hmre": "1.1.1", + "better-npm-run": "0.0.15", + "cors": "2.8.4", + "css-loader": "2.1.1", + "enzyme": "2.9.1", + "express": "4.16.4", + "express-http-proxy": "1.0.6", + "extract-text-webpack-plugin": "3.0.0", + "react-test-renderer": "15.6.1", + "react-transform-hmr": "1.0.4", + "redux-devtools-extension": "2.13.2", + "redux-mock-store": "1.2.3", + "rimraf": "2.6.1", + "style-loader": "0.18.2", + "ts-loader": "2.3.2", + "typescript": "2.4.2", + "webpack": "3.4.1", + "webpack-dev-middleware": "2.0.6", + "webpack-hot-middleware": "2.18.2" + } +} diff --git a/snd/resources/domain-templates/test.template.xml b/snd/resources/domain-templates/test.template.xml new file mode 100644 index 000000000..a293ce2ec --- /dev/null +++ b/snd/resources/domain-templates/test.template.xml @@ -0,0 +1,69 @@ + + + + + + + + \ No newline at end of file diff --git a/snd/resources/queries/auditLog/NarrativeAuditEvent.query.xml b/snd/resources/queries/auditLog/NarrativeAuditEvent.query.xml new file mode 100644 index 000000000..cd2ab91bf --- /dev/null +++ b/snd/resources/queries/auditLog/NarrativeAuditEvent.query.xml @@ -0,0 +1,18 @@ + + + + + + + + core + QCState + RowId + Label + + + +
+ + + \ No newline at end of file diff --git a/snd/resources/queries/snd/DeletedLookupSets.sql b/snd/resources/queries/snd/DeletedLookupSets.sql new file mode 100644 index 000000000..b6de93f93 --- /dev/null +++ b/snd/resources/queries/snd/DeletedLookupSets.sql @@ -0,0 +1,9 @@ +select + substring(qae.oldrecordmap, charindex('objectid=',qae.oldrecordmap, 0) + len('objectid='), 36) as objectid, + qae.date as modified + +from auditLog.QueryUpdateAuditEvent as qae + +WHERE qae.comment = 'A row was deleted.' + and qae.QueryName = 'LookupSets' + and qae.SchemaName = 'snd' \ No newline at end of file diff --git a/snd/resources/queries/snd/DeletedLookups.sql b/snd/resources/queries/snd/DeletedLookups.sql new file mode 100644 index 000000000..b5cb96f87 --- /dev/null +++ b/snd/resources/queries/snd/DeletedLookups.sql @@ -0,0 +1,9 @@ +select + substring(qae.oldrecordmap, charindex('objectid=',qae.oldrecordmap, 0) + len('objectid='), 36) as objectid, + qae.date as modified + +from auditLog.QueryUpdateAuditEvent as qae + +WHERE qae.comment = 'A row was deleted.' + and qae.QueryName = 'Lookups' + and qae.SchemaName = 'snd' \ No newline at end of file diff --git a/snd/resources/queries/snd/Events.query.xml b/snd/resources/queries/snd/Events.query.xml new file mode 100644 index 000000000..069ed1db2 --- /dev/null +++ b/snd/resources/queries/snd/Events.query.xml @@ -0,0 +1,9 @@ + + + + + EventId +
+ + + \ No newline at end of file diff --git a/snd/resources/queries/snd/EventsCache.query.xml b/snd/resources/queries/snd/EventsCache.query.xml new file mode 100644 index 000000000..3195efcd2 --- /dev/null +++ b/snd/resources/queries/snd/EventsCache.query.xml @@ -0,0 +1,16 @@ + + + + + + + Event ID + + + HTML Narrative + + +
+ + + diff --git a/snd/resources/queries/snd/LookupSets.js b/snd/resources/queries/snd/LookupSets.js new file mode 100644 index 000000000..62d102f83 --- /dev/null +++ b/snd/resources/queries/snd/LookupSets.js @@ -0,0 +1,39 @@ +var console = require("console"); +var LABKEY = require("labkey"); + +function init(event){ + + if (event === 'truncate') { + throw "Not allowed to truncate snd.LookupSets. Truncating this table can orphan lookup values in snd data."; + } +} + +function beforeInsert(row, errors) { + row.objectId = row.objectId || LABKEY.Utils.generateUUID().toUpperCase(); +} + +function beforeDelete(row, errors) { + + if (row.LookupSetId !== undefined) { + LABKEY.Query.selectRows({ + schemaName: 'snd', + queryName: 'Lookups', + columns: 'LookupSetId', + scope: this, + filterArray: [ + LABKEY.Filter.create('LookupSetId', row.LookupSetId, LABKEY.Filter.Types.EQUAL), + + ], + success: function (data) { + if (data.rows && data.rows.length) { + errors._form = 'LookupSet is in use and cannot be deleted' + return; + } + }, + failure: function (error) { + console.log('Select rows error'); + console.log(error); + } + }); + } +} \ No newline at end of file diff --git a/snd/resources/queries/snd/LookupSets.query.xml b/snd/resources/queries/snd/LookupSets.query.xml new file mode 100644 index 000000000..65b07f1a3 --- /dev/null +++ b/snd/resources/queries/snd/LookupSets.query.xml @@ -0,0 +1,17 @@ + + + + + SetName + + + true + + + true + + +
+ + + \ No newline at end of file diff --git a/snd/resources/queries/snd/LookupSets/.qview.xml b/snd/resources/queries/snd/LookupSets/.qview.xml new file mode 100644 index 000000000..02898e378 --- /dev/null +++ b/snd/resources/queries/snd/LookupSets/.qview.xml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/snd/resources/queries/snd/Lookups.js b/snd/resources/queries/snd/Lookups.js new file mode 100644 index 000000000..177cebbb2 --- /dev/null +++ b/snd/resources/queries/snd/Lookups.js @@ -0,0 +1,99 @@ +var console = require("console"); +var LABKEY = require("labkey"); + +function init(event){ + + if (event === 'truncate') { + throw "Not allowed to truncate snd.Lookups. Truncating this table can orphan lookup values in snd data."; + } +} + +function onUpsert(row, errors) { + // reuse LookupSetId if the SetName already exists. This primarily happens during ETLs + if (row.LookupSetId === undefined || row.LookupSetId == 'undefined') { + LABKEY.Query.selectRows({ + schemaName: 'snd', + queryName: 'LookupSets', + columns: 'LookupSetId', + scope: this, + filterArray: [ + LABKEY.Filter.create('SetName', row.SetName, LABKEY.Filter.Types.EQUAL), + + ], + success: function (data) { + if (data.rows && data.rows.length) { + row.LookupSetId = data.rows[0].LookupSetId; + + // console.log('caching ' + cacheKey + ': ' + row.GroupId); + } + }, + failure: function (error) { + console.log('Select rows error'); + console.log(error); + } + }); + } +} + +function beforeInsert(row, errors) { + row.objectId = row.objectId || LABKEY.Utils.generateUUID().toUpperCase(); + onUpsert(row, errors); +} + +function beforeUpdate(row, errors) { + onUpsert(row, errors); +} + +function beforeDelete(row, errors) { + if (row.LookupSetId !== undefined) { + + let lookupQuery + + LABKEY.Query.selectRows({ + schemaName: 'snd', + queryName: 'LookupSets', + columns: 'SetName', + scope: this, + filterArray: [ + LABKEY.Filter.create('LookupSetId', row.LookupSetId, LABKEY.Filter.Types.EQUAL) + ], + success: function (data) { + if (data.rows && data.rows.length) { + lookupQuery = data.rows[0].SetName + } + else { + errors._form = 'LookupSet not found - shouldn\'t happen' + return + } + + }, + failure: function (error) { + console.log('Select rows error'); + console.log(error); + } + }); + + + LABKEY.Query.selectRows({ + schemaName: 'snd', + queryName: 'Lookups', + columns: 'IsInUse', + scope: this, + filterArray: [ + LABKEY.Filter.create('LookupId', row["LookupId"], LABKEY.Filter.Types.EQUAL), + LABKEY.Filter.create('IsInUse', 'true', LABKEY.Filter.Types.EQUAL) + + ], + success: function (data) { + if (data.rows && data.rows.length) { + errors._form = 'Lookup item cannot be deleted - Lookup is in use.' + } + }, + failure: function (error) { + console.log('Select rows error'); + console.log(error); + } + }); + } +} + diff --git a/snd/resources/queries/snd/Lookups.query.xml b/snd/resources/queries/snd/Lookups.query.xml new file mode 100644 index 000000000..c4b5d0b15 --- /dev/null +++ b/snd/resources/queries/snd/Lookups.query.xml @@ -0,0 +1,20 @@ + + + + + Value + + + true + + + true + + + true + + +
+ + + \ No newline at end of file diff --git a/snd/resources/queries/snd/Lookups/.qview.xml b/snd/resources/queries/snd/Lookups/.qview.xml new file mode 100644 index 000000000..6dec6876a --- /dev/null +++ b/snd/resources/queries/snd/Lookups/.qview.xml @@ -0,0 +1,11 @@ + + + + + + + + + + + \ No newline at end of file diff --git a/snd/resources/queries/snd/PkgCategories.query.xml b/snd/resources/queries/snd/PkgCategories.query.xml new file mode 100644 index 000000000..24b0ff7ee --- /dev/null +++ b/snd/resources/queries/snd/PkgCategories.query.xml @@ -0,0 +1,9 @@ + + + + + Package Categories +
+ + + \ No newline at end of file diff --git a/snd/resources/queries/snd/PkgCategories/.qview.xml b/snd/resources/queries/snd/PkgCategories/.qview.xml new file mode 100644 index 000000000..6804f7d6f --- /dev/null +++ b/snd/resources/queries/snd/PkgCategories/.qview.xml @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/snd/resources/queries/snd/Pkgs.query.xml b/snd/resources/queries/snd/Pkgs.query.xml new file mode 100644 index 000000000..44baa19ed --- /dev/null +++ b/snd/resources/queries/snd/Pkgs.query.xml @@ -0,0 +1,9 @@ + + + + + Packages +
+ + + \ No newline at end of file diff --git a/snd/resources/queries/snd/Pkgs/.qview.xml b/snd/resources/queries/snd/Pkgs/.qview.xml new file mode 100644 index 000000000..42ef0d5ae --- /dev/null +++ b/snd/resources/queries/snd/Pkgs/.qview.xml @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/snd/resources/queries/snd/Projects/.qview.xml b/snd/resources/queries/snd/Projects/.qview.xml new file mode 100644 index 000000000..79d7298ae --- /dev/null +++ b/snd/resources/queries/snd/Projects/.qview.xml @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/snd/resources/queries/snd/TopLevelSuperPkgs.sql b/snd/resources/queries/snd/TopLevelSuperPkgs.sql new file mode 100644 index 000000000..352846ce8 --- /dev/null +++ b/snd/resources/queries/snd/TopLevelSuperPkgs.sql @@ -0,0 +1,23 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +SELECT SuperPkgId, +PkgId, +PkgId.Description AS Description, +PkgId.Narrative AS Narrative, +PkgId.Repeatable AS Repeatable, +IsPrimitive +FROM SuperPkgs +WHERE ParentSuperPkgId IS NULL \ No newline at end of file diff --git a/snd/resources/queries/snd/TopLevelSuperPkgs/.qview.xml b/snd/resources/queries/snd/TopLevelSuperPkgs/.qview.xml new file mode 100644 index 000000000..0cbda0557 --- /dev/null +++ b/snd/resources/queries/snd/TopLevelSuperPkgs/.qview.xml @@ -0,0 +1,12 @@ + + + + + + + + + + + + \ No newline at end of file diff --git a/snd/resources/schemas/dbscripts/sqlserver/snd-0.000-22.000.sql b/snd/resources/schemas/dbscripts/sqlserver/snd-0.000-22.000.sql new file mode 100644 index 000000000..419600efd --- /dev/null +++ b/snd/resources/schemas/dbscripts/sqlserver/snd-0.000-22.000.sql @@ -0,0 +1,1001 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +/* snd-17.20-17.30.sql */ + +EXEC core.fn_dropifexists 'CodedEvents','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'EventNotes','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'EventsCache','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'PkgCategoryJunction','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'ProjectItems','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'SuperPkgs','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'PkgCategories','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'Pkgs','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'Events','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists 'Projects','codedprocs','TABLE'; +GO + +EXEC core.fn_dropifexists NULL,'codedprocs','SCHEMA'; +GO + +CREATE SCHEMA snd; +GO + +/*==============================================================*/ +/* Table: Pkgs */ +/*==============================================================*/ +CREATE TABLE snd.Pkgs ( + PkgId INTEGER NOT NULL, + Description NVARCHAR(4000) NOT NULL, + Active BIT, + Repeatable BIT, + QcState INTEGER, + ObjectId UNIQUEIDENTIFIER NOT NULL DEFAULT newid(), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_PKGS PRIMARY KEY (PkgId), + CONSTRAINT FK_SND_PKGS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_PKGS_QCSTATE FOREIGN Key (QcState) REFERENCES core.DataStates (RowId) + +) +GO + +CREATE INDEX IDX_SND_PKGS_CONTAINER ON snd.Pkgs(Container); +CREATE INDEX IDX_SND_PKGS_QCSTATE ON snd.Pkgs(QcState); +GO + +/*==============================================================*/ +/* Table: SuperPkgs */ +/*==============================================================*/ +CREATE TABLE snd.SuperPkgs ( + SuperPkgId INTEGER NOT NULL, + ParentSuperPkgId INTEGER, + PkgId INTEGER NOT NULL, + SuperPkgPath VARCHAR(900) NOT NULL, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_SUPERPKGS PRIMARY KEY (SuperPkgId), + CONSTRAINT FK_SND_SUPERPKGS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_SUPERPKGS_PKGID FOREIGN KEY (PkgId) REFERENCES snd.Pkgs (PkgId) + +) +GO + +CREATE INDEX IDX_SND_SUPERPKGS_CONTAINER ON snd.SuperPkgs(Container); +CREATE INDEX IDX_SND_SUPERPKGS_PKGID ON snd.SuperPkgs(PkgId); +GO + +/*==============================================================*/ +/* Table: PkgCategories */ +/*==============================================================*/ +CREATE TABLE snd.PkgCategories ( + CategoryId INTEGER NOT NULL, + Description NVARCHAR(4000) NOT NULL, + Comment NVARCHAR(4000), + Active BIT NOT NULL, + SortOrder INTEGER, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_PKGCATEGORIES PRIMARY KEY (CategoryId), + CONSTRAINT FK_SND_PKGCATEGORIES_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId) + +) +GO + +CREATE INDEX IDX_SND_PKGCATEGORIES_CONTAINER ON snd.PkgCategories(Container); +GO + +/*==============================================================*/ +/* Table: PkgCategoryJunction */ +/*==============================================================*/ +CREATE TABLE snd.PkgCategoryJunction ( + PkgId INTEGER NOT NULL, + CategoryId INTEGER NOT NULL, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_PKGCATEGORYJUNCTION PRIMARY KEY (PkgId, CategoryId), + CONSTRAINT FK_SND_PKGCATEGORYJUNCTION_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_PKGCATEGORYJUNCTION_PKGID FOREIGN KEY (PkgId) REFERENCES snd.Pkgs (PkgId), + CONSTRAINT FK_SND_PKGCATEGORYJUNCTION_CATEGORYID FOREIGN KEY (CategoryId) REFERENCES snd.PkgCategories (CategoryId) + +) +GO + +CREATE INDEX IDX_SND_PKGCATEGORYJUNCTION_CONTAINER ON snd.PkgCategoryJunction(Container); +CREATE INDEX IDX_SND_PKGCATEGORYJUNCTION_PKGID ON snd.PkgCategoryJunction(PkgId); +CREATE INDEX IDX_SND_PKGCATEGORYJUNCTION_CATEGORYID ON snd.PkgCategoryJunction(CategoryId); +GO + +/*==============================================================*/ +/* Table: Projects */ +/*==============================================================*/ +CREATE TABLE snd.Projects ( + ProjectId INTEGER NOT NULL, + RevisionNum INTEGER NOT NULL, + ReferenceId INTEGER NOT NULL, + StartDate date NOT NULL, + EndDate date, + Description NVARCHAR(4000) NOT NULL, + ObjectId UNIQUEIDENTIFIER NOT NULL DEFAULT newid(), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_PROJECTS PRIMARY KEY (ProjectId, RevisionNum), + CONSTRAINT FK_SND_PROJECTS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId) + +) +GO + +CREATE INDEX IDX_SND_PROJECTS_CONTAINER ON snd.Projects(Container); +CREATE UNIQUE INDEX IDX_SND_PROJECTS_OBJECTID ON snd.Projects(ObjectId); +GO + +/*==============================================================*/ +/* Table: ProjectItems */ +/*==============================================================*/ +CREATE TABLE snd.ProjectItems ( + ProjectItemId INTEGER IDENTITY, + ParentObjectId UNIQUEIDENTIFIER, + SuperPkgId INTEGER NOT NULL, + Active BIT NOT NULL DEFAULT 1, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_PROJECTITEMS PRIMARY KEY (ProjectItemId), + CONSTRAINT FK_SND_PROJECTITEMS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_PROJECTITEMS_SUPERPKGID FOREIGN KEY (SuperPkgId) REFERENCES snd.SuperPkgs (SuperPkgId), + CONSTRAINT FK_SND_PROJECTITEMS_PARENTOBJECTID FOREIGN KEY (ParentObjectId) REFERENCES snd.Projects (ObjectId) + +) +GO + +CREATE INDEX IDX_SND_PROJECTITEMS_CONTAINER ON snd.ProjectItems(Container); +CREATE INDEX IDX_SND_PROJECTITEMS_SUPERPKGID ON snd.ProjectItems(SuperPkgId); +CREATE INDEX IDX_SND_PROJECTITEMS_PARENTOBJECTID ON snd.ProjectItems(ParentObjectId); +GO + +/*==============================================================*/ +/* Table: Events */ +/*==============================================================*/ +CREATE TABLE snd.Events ( + EventId INTEGER NOT NULL, + Id NVARCHAR(32) NOT NULL, + ParentObjectId UNIQUEIDENTIFIER, + Date DATETIME NOT NULL, + QcState int, + ObjectId UNIQUEIDENTIFIER NOT NULL DEFAULT newid(), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_EVENTS PRIMARY KEY (EventId), + CONSTRAINT FK_SND_EVENTS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_EVENTS_QCSTATE FOREIGN Key (QcState) REFERENCES core.DataStates (RowId), + CONSTRAINT FK_SND_EVENTS_PARENTOBJECTID FOREIGN KEY (ParentObjectId) REFERENCES snd.Projects (ObjectId) + +) +GO + +CREATE INDEX IDX_SND_EVENTS_CONTAINER ON snd.Events(Container); +CREATE INDEX IDX_SND_EVENTS_QCSTATE ON snd.Events(QcState); +CREATE INDEX IDX_SND_EVENTS_PARENTOBJECTID ON snd.Events(ParentObjectId); +GO + +/*==============================================================*/ +/* Table: CodedEvents */ +/*==============================================================*/ +CREATE TABLE snd.CodedEvents ( + CodedEventId INTEGER IDENTITY, + EventId INTEGER NOT NULL, + SuperPkgId INTEGER NOT NULL, + ObjectId UNIQUEIDENTIFIER NULL DEFAULT newid(), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_CODEDEVENTS PRIMARY KEY (CodedEventId), + CONSTRAINT FK_SND_CODEDEVENTS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_CODEDEVENTS_EVENTID FOREIGN KEY (EventId) REFERENCES snd.Events (EventId), + CONSTRAINT FK_SND_CODEDEVENTS_SUPERPKGID FOREIGN KEY (SuperPkgId) REFERENCES snd.SuperPkgs(SuperPkgId) + +) +GO + +CREATE INDEX IDX_SND_CODEDEVENTS_CONTAINER ON snd.CodedEvents(Container); +CREATE INDEX IDX_SND_CODEDEVENTS_EVENTID ON snd.CodedEvents(EventId); +CREATE INDEX IDX_SND_CODEDEVENTS_SUPERPKGID ON snd.CodedEvents(SuperPkgId); +GO + +/*==============================================================*/ +/* Table: EventNotes */ +/*==============================================================*/ +CREATE TABLE snd.EventNotes ( + EventNoteId INTEGER IDENTITY, + EventId INTEGER, + Note NVARCHAR(MAX) NOT NULL, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_EVENTNOTES PRIMARY KEY (EventNoteId), + CONSTRAINT FK_SND_EVENTNOTES_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_EVENTNOTES_EVENTNOTEID FOREIGN KEY (EventNoteId) REFERENCES snd.Events (EventId) + +) +GO + +CREATE INDEX IDX_SND_EVENTNOTES_CONTAINER ON snd.EventNotes(Container); +CREATE INDEX IDX_SND_EVENTNOTES_EVENTNOTEID ON snd.EventNotes(EventNoteId); +GO + +CREATE INDEX IDX_SND_PKGS_LSID ON snd.Pkgs(Lsid); +CREATE INDEX IDX_SND_SUPERPKGS_LSID ON snd.SuperPkgs(Lsid); +CREATE INDEX IDX_SND_PKGCATEGORIES_LSID ON snd.PkgCategories(Lsid); +CREATE INDEX IDX_SND_PKGCATEGORYJUNCTION_LSID ON snd.PkgCategoryJunction(Lsid); +CREATE INDEX IDX_SND_PROJECTS_LSID ON snd.Projects(Lsid); +CREATE INDEX IDX_SND_PROJECTITEMS_LSID ON snd.ProjectItems(Lsid); +CREATE INDEX IDX_SND_EVENTS_LSID ON snd.Events(Lsid); +CREATE INDEX IDX_SND_CODEDEVENTS_LSID ON snd.CodedEvents(Lsid); +CREATE INDEX IDX_SND_EVENTNOTES_LSID ON snd.EventNotes(Lsid); + +ALTER TABLE snd.Pkgs ADD Narrative NVARCHAR(MAX) NULL; + +/*==============================================================*/ +/* Table: LookupSets */ +/*==============================================================*/ +CREATE TABLE snd.LookupSets ( + LookupSetId INTEGER NOT NULL, + SetName NVARCHAR(128) NOT NULL, + Label NVARCHAR(128), + Description NVARCHAR(900), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_LOOKUPSETS PRIMARY KEY (LookupSetId), + CONSTRAINT FK_SND_LOOKUPSETS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId) +) +GO + +CREATE INDEX IDX_SND_LOOKUPSETS_CONTAINER ON snd.LookupSets(Container); +GO + +/*==============================================================*/ +/* Table: Lookups */ +/*==============================================================*/ +CREATE TABLE snd.Lookups ( + LookupSetId INTEGER NOT NULL, + Value VARCHAR(896) NOT NULL, + Displayable BIT NOT NULL, + SortOrder INTEGER, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_LOOKUPS PRIMARY KEY (LookupSetId, Value), + CONSTRAINT FK_SND_LOOKUPS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_LOOKUPS_LOOKUPSETID FOREIGN KEY (LookupSetId) REFERENCES snd.LookupSets (LookupSetId) +) + +CREATE INDEX IDX_SND_LOOKUPS_CONTAINER ON snd.Lookups(Container); +CREATE INDEX IDX_SND_LOOKUPS_LOOKUPSETID ON snd.Lookups(LookupSetId); +GO + +ALTER TABLE snd.SuperPkgs ADD SortOrder INTEGER; + +DROP TABLE snd.Lookups +GO + +DROP TABLE snd.LookupSets +GO + +/*==============================================================*/ +/* Table: LookupSets */ +/*==============================================================*/ +CREATE TABLE snd.LookupSets ( + LookupSetId INTEGER IDENTITY(1,1) NOT NULL, + SetName NVARCHAR(128) NOT NULL, + Label NVARCHAR(128), + Description NVARCHAR(900), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_LOOKUPSETS PRIMARY KEY (LookupSetId), + CONSTRAINT FK_SND_LOOKUPSETS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId) +) +GO + +CREATE INDEX IDX_SND_LOOKUPSETS_CONTAINER ON snd.LookupSets(Container); +GO + +/*==============================================================*/ +/* Table: Lookups */ +/*==============================================================*/ +CREATE TABLE snd.Lookups ( + LookupSetId INTEGER NOT NULL, + Value NVARCHAR(446) NOT NULL, + Displayable BIT NOT NULL, + SortOrder INTEGER, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_LOOKUPS PRIMARY KEY (LookupSetId, Value), + CONSTRAINT FK_SND_LOOKUPS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_LOOKUPS_LOOKUPSETID FOREIGN KEY (LookupSetId) REFERENCES snd.LookupSets (LookupSetId) +) + +CREATE INDEX IDX_SND_LOOKUPS_CONTAINER ON snd.Lookups(Container); +CREATE INDEX IDX_SND_LOOKUPS_LOOKUPSETID ON snd.Lookups(LookupSetId); +GO + +CREATE FUNCTION snd.fGetSuperPkg ( @TopLevelPkgId INT ) +RETURNS TABLE +AS + +-- ========================================================================================== +-- Author: Terry Hawkins +-- Creation date: 9/22/2017 +-- Description: Table valued function to return hierarchical view of a superPkg +-- ========================================================================================== +RETURN + ( + WITH CTE1 ( TopLevelPkgId, SuperPkgId, ParentSuperPkgId, PkgId, TreePath, SuperPkgPath, SortOrder, DESCRIPTION, Narrative, Active, Repeatable, Level ) + AS ( + + -- anchor member definition + SELECT @TopLevelPkgId AS TopLevelPkgId , + sp.SuperPkgId AS SuperPkgId , + sp.ParentSuperPkgId AS ParentSuperPkgId , + sp.PkgId AS PkgId , + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), ROW_NUMBER() OVER ( ORDER BY sp.SortOrder )), + 3) AS TreePath , + sp.SuperPkgPath AS SuperPkgPath , + sp.SortOrder AS SortOrder , + p.Description AS Description , + p.Narrative AS Narrative , + p.Active AS Active , + p.Repeatable AS Repeatable , + 1 AS Level + FROM snd.SuperPkgs sp + INNER JOIN snd.Pkgs p ON sp.PkgId = p.PkgId + WHERE sp.PkgId = @TopLevelPkgId + AND sp.ParentSuperPkgId IS NULL + UNION ALL + SELECT @TopLevelPkgId AS TopLevelPkgId , + sp.SuperPkgId AS SuperPkgId , + c.SuperPkgId AS ParentSuperPkgId , + sp.PkgId AS PkgId , + c.TreePath + '/' + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), RIGHT(ROW_NUMBER() OVER ( ORDER BY sp.SortOrder ), + 10)), 3) AS TreePath , + sp.SuperPkgPath AS SuperPkgPath , + sp.SortOrder AS SortOrder , + p.Description AS Description , + p.Narrative AS Narrative , + p.Active AS Active , + p.Repeatable AS Repeatable , + c.Level + 1 AS Level + FROM snd.SuperPkgs AS sp + INNER JOIN CTE1 AS c ON + -- add subpackages + sp.ParentSuperPkgId = c.SuperPkgId + -- add children of subpackages + OR sp.ParentSuperPkgId IN (SELECT sp2.SuperPkgId FROM snd.SuperPkgs AS sp2 WHERE c.PkgId = sp2.PkgId AND sp2.ParentSuperPkgId IS NULL ) + + INNER JOIN snd.Pkgs AS p ON sp.PkgId = p.PkgId + ) + SELECT @TopLevelPkgId AS TopLevelPkgId , + c.SuperPkgId AS SuperPkgId , + c.ParentSuperPkgId AS ParentSuperPkgId , + c.PkgId AS PkgId , + c.TreePath AS TreePath , + c.SuperPkgPath AS SuperPkgPath , + c.SortOrder AS SortOrder , + c.DESCRIPTION AS Description , + c.Narrative AS Narrative , + c.Active AS Active , + c.Repeatable AS Repeatable , + c.Level AS Level + FROM CTE1 c + +); +GO + +ALTER TABLE snd.PkgCategories ADD Objectid uniqueidentifier NOT NULL DEFAULT newid(); + +ALTER TABLE snd.PkgCategoryJunction ADD Objectid uniqueidentifier NOT NULL DEFAULT newid(); + +ALTER TABLE snd.ProjectItems ADD Objectid uniqueidentifier NOT NULL DEFAULT newid(); + +ALTER TABLE snd.Lookups ADD LookupId INT IDENTITY(1,1) +ALTER TABLE snd.Lookups DROP CONSTRAINT PK_SND_LOOKUPS +GO + +ALTER TABLE snd.Lookups ADD CONSTRAINT PK_SND_LOOKUPS PRIMARY KEY (LookupId) + +CREATE UNIQUE INDEX IDX_SND_LOOKUPS_LOOKUPSETID_VALUE ON snd.Lookups(LookupSetId, Value) + +/* snd-17.30-18.10.sql */ + +EXEC core.fn_dropifexists 'Projects', 'snd', 'CONSTRAINT', 'IDX_SND_PROJECTS_CONTAINER'; +EXEC core.fn_dropifexists 'Projects', 'snd', 'CONSTRAINT', 'IDX_SND_PROJECTS_OBJECTID'; +EXEC core.fn_dropifexists 'ProjectItems', 'snd', 'CONSTRAINT', 'FK_SND_PROJECTITEMS_PARENTOBJECTID'; +EXEC core.fn_dropifexists 'Events', 'snd', 'CONSTRAINT', 'FK_SND_EVENTS_PARENTOBJECTID'; +GO + +EXEC core.fn_dropifexists 'Projects', 'snd', 'TABLE', NULL +GO + +CREATE TABLE snd.Projects ( + ProjectId INTEGER NOT NULL, + RevisionNum INTEGER NOT NULL, + ReferenceId INTEGER NOT NULL, + StartDate date NOT NULL, + EndDate date, + Description NVARCHAR(4000) NOT NULL, + Active BIT NOT NULL, + ObjectId UNIQUEIDENTIFIER NOT NULL DEFAULT newid(), + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_PROJECTS PRIMARY KEY NONCLUSTERED (ObjectId), + CONSTRAINT FK_SND_PROJECTS_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId) + +) +GO + +CREATE INDEX IDX_SND_PROJECTS_CONTAINER ON snd.Projects(Container); +CREATE UNIQUE CLUSTERED INDEX IDX_SND_PROJECTS_PROJECTID_REVNUM ON snd.Projects(ProjectId, RevisionNum); +GO + +EXEC core.fn_dropifexists 'ProjectItems', 'snd', 'CONSTRAINT', 'FK_SND_PROJECTITEMS_PARENTOBJECTID'; +EXEC core.fn_dropifexists 'Events', 'snd', 'CONSTRAINT', 'FK_SND_EVENTS_PARENTOBJECTID'; +GO + +DELETE FROM snd.ProjectItems; +DELETE FROM snd.CodedEvents; +DELETE FROM snd.Events; +GO + +ALTER TABLE snd.ProjectItems +ADD CONSTRAINT FK_SND_PROJECTITEMS_PARENTOBJECTID FOREIGN KEY (ParentObjectId) REFERENCES snd.Projects (ObjectId); + +ALTER TABLE snd.Events +ADD CONSTRAINT FK_SND_EVENTS_PARENTOBJECTID FOREIGN KEY (ParentObjectId) REFERENCES snd.Projects (ObjectId); +GO + +EXEC core.fn_dropifexists 'fGetProjectItems','snd', 'FUNCTION'; +GO + +CREATE FUNCTION [snd].[fGetProjectItems] + ( + @projectId INT , + @revisionNum INT + ) +RETURNS TABLE +AS + +-- ========================================================================================== +-- Author: Terry Hawkins +-- Creation date: 12/14/2017 +-- Description: Returns the list of ProjectItems for a Project/Revision along with +-- sub packages for each ProjectItem +-- ========================================================================================== +RETURN + ( +WITH CTE1 ( ProjectId, RevisionNum, ProjectItemId, ParentObjectId, ParentSuperPkgId, SuperPkgId, PkgId, Active, TreePath, Level, Description ) + AS ( SELECT @projectId AS ProjectId , + @revisionNum AS RevisionNum , + pi.ProjectItemId , + pi.ParentObjectId AS ParentObjectId , + sp.ParentSuperPkgId AS ParentSuperPkgId , + sp.SuperPkgId AS SuperPkgId , + sp.PkgId AS PkgId , + p.Active , + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), ROW_NUMBER() OVER ( ORDER BY pi.ProjectItemId, sp.SuperPkgId )), + 3) AS TreePath , + 1 AS Level , + pkg.Description + FROM snd.ProjectItems AS pi + INNER JOIN snd.Projects AS p ON pi.ParentObjectId = p.ObjectId + INNER JOIN snd.SuperPkgs AS sp ON pi.SuperPkgId = sp.SuperPkgId + INNER JOIN snd.Pkgs pkg ON sp.PkgId = pkg.PkgId + WHERE p.ProjectId = @projectId + AND p.RevisionNum = @revisionNum + UNION ALL + SELECT c.ProjectId AS ProjectId , + c.RevisionNum AS RevisionNum , + c.ProjectItemId , + c.ParentObjectId AS ParentObjectId , + sp.ParentSuperPkgId AS ParentSuperPkgId , + sp.SuperPkgId AS SuperPkgId , + sp.PkgId AS PkgId , + c.Active , + c.TreePath + '/' + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), RIGHT(ROW_NUMBER() OVER ( ORDER BY sp.SortOrder ), + 10)), 3) AS TreePath , + c.Level + 1 AS Level , + pkg.Description + FROM snd.SuperPkgs AS sp + INNER JOIN snd.Pkgs AS pkg ON sp.PkgId = pkg.PkgId + INNER JOIN CTE1 AS c ON sp.ParentSuperPkgId = c.SuperPkgId + -- get the sub-pkg hierarchy from the top-level super pkg definition + OR sp.ParentSuperPkgId IN ( + SELECT sp2.SuperPkgId + FROM snd.SuperPkgs AS sp2 + WHERE c.PkgId = sp2.PkgId + AND sp2.ParentSuperPkgId IS NULL) + ) + SELECT @projectId AS ProjectId , + @revisionNum AS RevisionNum , + c.ProjectItemId , + c.SuperPkgId AS SuperPkgId , + c.PkgId AS PkgId , + c.TreePath AS TreePath , + c.Level AS Level , + c.Active AS Active , + c.Description + FROM CTE1 c + +); +GO + +EXEC core.fn_dropifexists 'fGetProjectItems','snd', 'FUNCTION'; +GO + +CREATE FUNCTION [snd].[fGetProjectItems] + ( + @projectId INT , + @revisionNum INT + ) +RETURNS TABLE +AS + +-- ========================================================================================== +-- Author: Terry Hawkins +-- Creation date: 12/14/2017 +-- Description: Returns the list of ProjectItems for a Project/Revision along with +-- sub packages for each ProjectItem +-- ========================================================================================== +RETURN + ( +WITH CTE1 ( ProjectId, RevisionNum, ProjectItemId, ParentObjectId, ParentSuperPkgId, SuperPkgId, PkgId, ProjectActive, Active, TreePath, Level, Description ) + AS ( SELECT @projectId AS ProjectId , + @revisionNum AS RevisionNum , + pi.ProjectItemId , + pi.ParentObjectId AS ParentObjectId , + sp.ParentSuperPkgId AS ParentSuperPkgId , + sp.SuperPkgId AS SuperPkgId , + sp.PkgId AS PkgId , + p.Active as ProjectActive, + pi.Active, + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), ROW_NUMBER() OVER ( ORDER BY pi.ProjectItemId, sp.SuperPkgId )), + 3) AS TreePath , + 1 AS Level , + pkg.Description + FROM snd.ProjectItems AS pi + INNER JOIN snd.Projects AS p ON pi.ParentObjectId = p.ObjectId + INNER JOIN snd.SuperPkgs AS sp ON pi.SuperPkgId = sp.SuperPkgId + INNER JOIN snd.Pkgs pkg ON sp.PkgId = pkg.PkgId + WHERE p.ProjectId = @projectId + AND p.RevisionNum = @revisionNum + UNION ALL + SELECT c.ProjectId AS ProjectId , + c.RevisionNum AS RevisionNum , + c.ProjectItemId , + c.ParentObjectId AS ParentObjectId , + sp.ParentSuperPkgId AS ParentSuperPkgId , + sp.SuperPkgId AS SuperPkgId , + sp.PkgId AS PkgId , + c.ProjectActive , + c.Active , + c.TreePath + '/' + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), RIGHT(ROW_NUMBER() OVER ( ORDER BY sp.SortOrder ), + 10)), 3) AS TreePath , + c.Level + 1 AS Level , + pkg.Description + FROM snd.SuperPkgs AS sp + INNER JOIN snd.Pkgs AS pkg ON sp.PkgId = pkg.PkgId + INNER JOIN CTE1 AS c ON sp.ParentSuperPkgId = c.SuperPkgId + -- get the sub-pkg hierarchy from the top-level super pkg definition + OR sp.ParentSuperPkgId IN ( + SELECT sp2.SuperPkgId + FROM snd.SuperPkgs AS sp2 + WHERE c.PkgId = sp2.PkgId + AND sp2.ParentSuperPkgId IS NULL) + ) + SELECT @projectId AS ProjectId , + @revisionNum AS RevisionNum , + c.ProjectItemId , + c.SuperPkgId AS SuperPkgId , + c.PkgId AS PkgId , + c.TreePath AS TreePath , + c.Level AS Level , + c.ProjectActive , + c.Active , + c.Description + FROM CTE1 c + +); +GO + +/* Recreate EventData table */ +EXEC core.fn_dropifexists 'CodedEvents','snd','TABLE'; +GO + +/*==============================================================*/ +/* Table: EventData */ +/*==============================================================*/ +CREATE TABLE snd.EventData ( + EventDataId INTEGER NOT NULL, + EventId INTEGER NOT NULL, + SuperPkgId INTEGER NOT NULL, + ObjectURI LsidType NOT NULL, + Container ENTITYID NOT NULL, + CreatedBy USERID, + Created DATETIME, + ModifiedBy USERID, + Modified DATETIME, + Lsid LSIDType, + + CONSTRAINT PK_SND_EVENTDATA PRIMARY KEY (EventDataId), + CONSTRAINT FK_SND_EVENTDATA_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId), + CONSTRAINT FK_SND_EVENTDATA_EVENTID FOREIGN KEY (EventId) REFERENCES snd.Events (EventId), + CONSTRAINT FK_SND_EVENTDATA_SUPERPKGID FOREIGN KEY (SuperPkgId) REFERENCES snd.SuperPkgs(SuperPkgId) +) +GO + +/* Recreate EventNoteId not as identity column for etls */ +ALTER TABLE snd.EventNotes DROP PK_SND_EVENTNOTES; +ALTER TABLE snd.EventNotes DROP CONSTRAINT FK_SND_EVENTNOTES_EVENTNOTEID; +DROP INDEX IDX_SND_EVENTNOTES_EVENTNOTEID ON snd.EventNotes; +GO + +ALTER TABLE snd.EventNotes DROP COLUMN EventNoteId; +GO + +ALTER TABLE snd.EventNotes ADD EventNoteId INTEGER NOT NULL; +GO + +ALTER TABLE snd.EventNotes ADD CONSTRAINT PK_SND_EVENTNOTES PRIMARY KEY (EventNoteId); +ALTER TABLE snd.EventNotes ADD CONSTRAINT FK_SND_EVENTNOTES_EVENTNOTEID FOREIGN KEY (EventNoteId) REFERENCES snd.Events (EventId) +CREATE INDEX IDX_SND_EVENTNOTES_EVENTNOTEID ON snd.EventNotes(EventNoteId); +GO + +EXEC sp_rename 'snd.Events.Id', 'ParticipantId', 'COLUMN'; + +EXEC core.fn_dropifexists 'EventNotes', 'snd', 'CONSTRAINT', 'FK_SND_EVENTNOTES_EVENTNOTEID'; +GO + +ALTER TABLE snd.EventNotes ADD CONSTRAINT FK_SND_EVENTNOTES_EVENTID FOREIGN KEY (EventId) REFERENCES snd.Events (EventId) +GO + +ALTER TABLE snd.Lookups ADD [ObjectId] UNIQUEIDENTIFIER NOT NULL DEFAULT NEWID(); +CREATE UNIQUE INDEX idx_snd_lookups_objectid ON snd.lookups (ObjectId); + +ALTER TABLE snd.LookupSets ADD [ObjectId] UNIQUEIDENTIFIER NOT NULL DEFAULT NEWID(); +CREATE UNIQUE INDEX idx_snd_lookupSets_objectid ON snd.lookupSets (ObjectId); +GO + +ALTER TABLE snd.EventData ADD ParentEventDataId INT; +ALTER TABLE snd.EventData DROP COLUMN Modified; +ALTER TABLE snd.EventData DROP COLUMN ModifiedBy; +ALTER TABLE snd.EventData DROP COLUMN Created; +ALTER TABLE snd.EventData DROP COLUMN CreatedBy; +GO + +/* snd-18.10-18.20.sql */ + +sp_rename 'snd.Events.ParticipantId', 'SubjectId', 'COLUMN'; + +/*==============================================================*/ +/* Table: EventsCache */ +/*==============================================================*/ +CREATE TABLE snd.EventsCache ( + EventId INTEGER NOT NULL, + HtmlNarrative NVARCHAR(MAX), + + CONSTRAINT PK_SND_EVENTS_CACHE PRIMARY KEY (EventId) +) +GO + +ALTER TABLE snd.EventsCache + ADD CONSTRAINT FK_EventsCache_EventId FOREIGN KEY (EventId) REFERENCES snd.Events (EventId); +GO + +ALTER TABLE snd.EventData ADD ObjectId UNIQUEIDENTIFIER NOT NULL DEFAULT newid(); +GO + +ALTER TABLE snd.EventsCache ADD Container entityid; +ALTER TABLE snd.EventsCache ADD CONSTRAINT FK_SND_EVENTSCACHE_CONTAINER FOREIGN KEY (Container) REFERENCES core.Containers (EntityId); +CREATE INDEX IDX_SND_EVENTSCACHE_CONTAINER ON snd.EventsCache(Container); +GO + +ALTER TABLE snd.EventNotes +DROP CONSTRAINT PK_SND_EVENTNOTES; +DROP INDEX IDX_SND_EVENTNOTES_EVENTNOTEID ON snd.EventNotes; +GO + +ALTER TABLE snd.EventNotes +DROP COLUMN EventNoteId; +GO + +ALTER TABLE snd.EventNotes ADD EventNoteId INT IDENTITY(1, 1) NOT NULL; +GO + +ALTER TABLE snd.EventNotes ADD CONSTRAINT PK_SND_EVENTNOTES PRIMARY KEY (EventNoteId); +CREATE INDEX IDX_SND_EVENTNOTES_EVENTNOTEID ON snd.EventNotes(EventNoteId); + +EXEC core.fn_dropifexists 'EventData', 'snd', 'COLUMN', 'ObjectId'; + +ALTER TABLE snd.SuperPkgs +ADD Required BIT NOT NULL DEFAULT 0; +EXEC core.fn_dropifexists 'fGetSuperPkg', 'snd', 'FUNCTION', INT; +GO + +CREATE FUNCTION snd.fGetSuperPkg ( @TopLevelPkgId INT ) +RETURNS TABLE +AS + +-- ========================================================================================== +-- Author: Terry Hawkins +-- Creation date: 9/22/2017 +-- Description: Table valued function to return hierarchical view of a superPkg +-- ========================================================================================== +-- Revising 4/3/2018 to add Required column +RETURN + ( + WITH CTE1 ( TopLevelPkgId, SuperPkgId, ParentSuperPkgId, PkgId, TreePath, SuperPkgPath, SortOrder, Required, DESCRIPTION, Narrative, Active, Repeatable, Level ) + AS ( + + -- anchor member definition + SELECT @TopLevelPkgId AS TopLevelPkgId , + sp.SuperPkgId AS SuperPkgId , + sp.ParentSuperPkgId AS ParentSuperPkgId , + sp.PkgId AS PkgId , + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), ROW_NUMBER() OVER ( ORDER BY sp.SortOrder )), + 3) AS TreePath , + sp.SuperPkgPath AS SuperPkgPath , + sp.SortOrder AS SortOrder , + sp.Required AS Required , + p.Description AS Description , + p.Narrative AS Narrative , + p.Active AS Active , + p.Repeatable AS Repeatable , + 1 AS Level + FROM snd.SuperPkgs sp + INNER JOIN snd.Pkgs p ON sp.PkgId = p.PkgId + WHERE sp.PkgId = @TopLevelPkgId + AND sp.ParentSuperPkgId IS NULL + UNION ALL + SELECT @TopLevelPkgId AS TopLevelPkgId , + sp.SuperPkgId AS SuperPkgId , + c.SuperPkgId AS ParentSuperPkgId , + sp.PkgId AS PkgId , + c.TreePath + '/' + RIGHT(SPACE(3) + + CONVERT(VARCHAR(MAX), RIGHT(ROW_NUMBER() OVER ( ORDER BY sp.SortOrder ), + 10)), 3) AS TreePath , + sp.SuperPkgPath AS SuperPkgPath , + sp.SortOrder AS SortOrder , + sp.Required AS Required , + p.Description AS Description , + p.Narrative AS Narrative , + p.Active AS Active , + p.Repeatable AS Repeatable , + c.Level + 1 AS Level + FROM snd.SuperPkgs AS sp + INNER JOIN CTE1 AS c ON + -- add subpackages + sp.ParentSuperPkgId = c.SuperPkgId + -- add children of subpackages + OR sp.ParentSuperPkgId IN (SELECT sp2.SuperPkgId FROM snd.SuperPkgs AS sp2 WHERE c.PkgId = sp2.PkgId AND sp2.ParentSuperPkgId IS NULL ) + + INNER JOIN snd.Pkgs AS p ON sp.PkgId = p.PkgId + ) + SELECT @TopLevelPkgId AS TopLevelPkgId , + c.SuperPkgId AS SuperPkgId , + c.ParentSuperPkgId AS ParentSuperPkgId , + c.PkgId AS PkgId , + c.TreePath AS TreePath , + c.SuperPkgPath AS SuperPkgPath , + c.SortOrder AS SortOrder , + c.Required AS Required , + c.DESCRIPTION AS Description , + c.Narrative AS Narrative , + c.Active AS Active , + c.Repeatable AS Repeatable , + c.Level AS Level + FROM CTE1 c + +); +GO + +CREATE INDEX IDX_SND_EVENTDATA_SUPERPKGID ON snd.EventData(SuperPkgId); +CREATE INDEX IDX_SND_EVENTDATA_EVENTID ON snd.EventData(EventId); + +/* + Changes to improve snd.Events CRUD performance and add default QcState +*/ + +-- delete the trigger if it exists +IF (OBJECT_ID(N'snd.ti_after_Events') IS NOT NULL) + BEGIN + DROP TRIGGER snd.ti_after_Events; + END; +GO +-- if QcState is null, set it to 'Completed' +CREATE TRIGGER snd.ti_after_Events ON snd.Events FOR INSERT AS +BEGIN + SET NOCOUNT ON; + UPDATE snd.Events + SET QcState = (SELECT TOP(1) q.rowId FROM core.Qcstate AS q WHERE q.Label = 'Completed' ORDER BY q.rowId) + FROM inserted AS i + INNER JOIN snd.Events AS e ON i.EventId = e.EventId + WHERE i.QcState IS NULL +END +go + +-- move Events table cluster index to AnimalId, Date +-- +-- need to drop foreign key constraints that reference the cluster index +EXEC core.fn_dropifexists 'EventNotes', 'snd', 'CONSTRAINT', 'FK_SND_EVENTNOTES_EVENTID' +EXEC core.fn_dropifexists 'EventData', 'snd', 'CONSTRAINT', 'FK_SND_EVENTDATA_EVENTID' +EXEC core.fn_dropifexists 'EventsCache', 'snd', 'CONSTRAINT', 'FK_EventsCache_EventId' +-- drop the snd.Events PK constraint (clustered index) +EXEC core.fn_dropifexists 'Events', 'snd', 'CONSTRAINT', 'PK_SND_EVENTS' + +-- Add new snd.Events table PK constraint (non-clustered) +ALTER TABLE snd.Events ADD CONSTRAINT PK_SND_EVENTS PRIMARY KEY NONCLUSTERED + ( + EventId ASC + )WITH (PAD_INDEX = OFF, STATISTICS_NORECOMPUTE = OFF, SORT_IN_TEMPDB = OFF, IGNORE_DUP_KEY = OFF, ONLINE = OFF, ALLOW_ROW_LOCKS = ON, ALLOW_PAGE_LOCKS = ON) +GO + +-- Create new clustered index on snd.Events +EXEC core.fn_dropifexists 'Events', 'snd', 'INDEX', 'IDX_SND_EVENTS_SUBJECTID_DATE' +CREATE CLUSTERED INDEX IDX_SND_EVENTS_SUBJECTID_DATE ON snd.Events + ( + SubjectId ASC, + Date DESC + )WITH (PAD_INDEX = OFF, STATISTICS_NORECOMPUTE = OFF, SORT_IN_TEMPDB = OFF, DROP_EXISTING = OFF, ONLINE = OFF, ALLOW_ROW_LOCKS = ON, ALLOW_PAGE_LOCKS = ON) +GO + + +-- restore constraints +-- +-- EventNotes +ALTER TABLE snd.EventNotes WITH CHECK ADD CONSTRAINT FK_SND_EVENTNOTES_EVENTID FOREIGN KEY(EventId) + REFERENCES snd.Events (EventId) +GO + +ALTER TABLE snd.EventNotes CHECK CONSTRAINT FK_SND_EVENTNOTES_EVENTID +GO + +-- EventData +ALTER TABLE snd.EventData WITH CHECK ADD CONSTRAINT FK_SND_EVENTDATA_EVENTID FOREIGN KEY(EventId) + REFERENCES snd.Events (EventId) +GO + +ALTER TABLE snd.EventData CHECK CONSTRAINT FK_SND_EVENTDATA_EVENTID +GO + +-- EventsCache +ALTER TABLE snd.EventsCache WITH CHECK ADD CONSTRAINT FK_EVENTSCACHE_EVENTID FOREIGN KEY(EventId) + REFERENCES snd.Events (EventId) +GO + +ALTER TABLE snd.EventsCache CHECK CONSTRAINT FK_EventsCache_EventId +GO + +/* 21.xxx SQL scripts */ + +UPDATE exp.PropertyValidator SET TypeURI = 'urn:lsid:labkey.com:PropertyValidator:textlength' +WHERE TypeURI = 'urn:lsid:labkey.com:PropertyValidator:length' + AND PropertyId IN ( + SELECT PropertyId + FROM exp.PropertyDescriptor + WHERE PropertyURI LIKE '%:package-snd%Package%' + ) + +GO + +ALTER TRIGGER snd.ti_after_Events ON snd.Events FOR INSERT AS +BEGIN + SET NOCOUNT ON; +UPDATE snd.Events +SET QcState = (SELECT TOP(1) q.rowId FROM core.DataStates AS q WHERE q.Label = 'Completed' ORDER BY q.rowId) + FROM inserted AS i + INNER JOIN snd.Events AS e ON i.EventId = e.EventId +WHERE i.QcState IS NULL +END +GO \ No newline at end of file diff --git a/snd/resources/schemas/dbscripts/sqlserver/snd-23.000-23.001.sql b/snd/resources/schemas/dbscripts/sqlserver/snd-23.000-23.001.sql new file mode 100644 index 000000000..b19de0ac5 --- /dev/null +++ b/snd/resources/schemas/dbscripts/sqlserver/snd-23.000-23.001.sql @@ -0,0 +1,15 @@ + +ALTER TRIGGER snd.ti_after_Events ON snd.Events FOR INSERT AS +BEGIN + SET NOCOUNT ON; + DECLARE + @Container ENTITYID + + SELECT @Container = INSERTED.[Container] FROM INSERTED +UPDATE snd.Events +SET QcState = (SELECT TOP(1) q.rowId FROM core.DataStates AS q WHERE q.Label = 'Completed' AND q.Container = @Container ORDER BY q.rowId) + FROM INSERTED AS i + INNER JOIN snd.Events AS e ON i.EventId = e.EventId +WHERE i.QcState IS NULL +END +GO \ No newline at end of file diff --git a/snd/resources/schemas/dbscripts/sqlserver/snd-23.001-23.003.sql b/snd/resources/schemas/dbscripts/sqlserver/snd-23.001-23.003.sql new file mode 100644 index 000000000..092957346 --- /dev/null +++ b/snd/resources/schemas/dbscripts/sqlserver/snd-23.001-23.003.sql @@ -0,0 +1,2 @@ +CREATE UNIQUE INDEX IDX_LookupSets_SetName +ON snd.LookupSets (SetName) \ No newline at end of file diff --git a/snd/resources/schemas/dbscripts/sqlserver/snd-23.003-23.004.sql b/snd/resources/schemas/dbscripts/sqlserver/snd-23.003-23.004.sql new file mode 100644 index 000000000..06654e22f --- /dev/null +++ b/snd/resources/schemas/dbscripts/sqlserver/snd-23.003-23.004.sql @@ -0,0 +1 @@ +ALTER TABLE snd.EventData ADD SortOrder INTEGER NULL; \ No newline at end of file diff --git a/snd/resources/schemas/dbscripts/sqlserver/snd-23.004-23.005.sql b/snd/resources/schemas/dbscripts/sqlserver/snd-23.004-23.005.sql new file mode 100644 index 000000000..b12a84263 --- /dev/null +++ b/snd/resources/schemas/dbscripts/sqlserver/snd-23.004-23.005.sql @@ -0,0 +1,80 @@ +EXEC core.fn_dropifexists 'fGetAllSuperPkgs', 'snd', 'function'; +go + +CREATE FUNCTION snd.fGetAllSuperPkgs +() +RETURNS @expandedSuperPackages TABLE +( + TopLevelPkgId INTEGER NOT NULL, + SuperPkgId INTEGER NOT NULL, + ParentSuperPkgId INTEGER NULL, + PkgId INTEGER NOT NULL, + TreePath VARCHAR(MAX) NOT NULL, + SuperPkgPath INTEGER NOT NULL, + SortOrder INTEGER NULL, + Required INTEGER NULL, + DESCRIPTION VARCHAR(MAX) NOT NULL, + Narrative VARCHAR(MAX) NOT NULL, + Active INTEGER NOT NULL, + Repeatable INTEGER NOT NULL, + Level INTEGER NOT NULL +) +AS +BEGIN + DECLARE @loopCursor CURSOR; + DECLARE @topLevelPkgId INTEGER; + + SET @loopCursor = CURSOR LOCAL FOR +SELECT PkgId AS topLevelPackageId +FROM snd.SuperPkgs AS tl +WHERE ParentSuperPkgId IS NULL + FOR READ ONLY; + +OPEN @loopCursor; +FETCH @loopCursor + INTO @topLevelPkgId; + +WHILE (@@FETCH_STATUS = 0) +BEGIN +INSERT INTO @expandedSuperPackages +( + TopLevelPkgId, + SuperPkgId, + ParentSuperPkgId, + PkgId, + TreePath, + SuperPkgPath, + SortOrder, + Required, + DESCRIPTION, + Narrative, + Active, + Repeatable, + Level +) + (SELECT TopLevelPkgId, + SuperPkgId, + ParentSuperPkgId, + PkgId, + TreePath, + SuperPkgPath, + SortOrder, + Required, + Description, + Narrative, + Active, + Repeatable, + Level + FROM snd.fGetSuperPkg(@topLevelPkgId) ); + +FETCH NEXT FROM @loopCursor + INTO @topLevelPkgId; + +END; -- WHILE LOOP + +CLOSE @loopCursor; +DEALLOCATE @loopCursor; + + RETURN; +END; +GO diff --git a/snd/resources/schemas/snd.xml b/snd/resources/schemas/snd.xml new file mode 100644 index 000000000..ea90e8ff9 --- /dev/null +++ b/snd/resources/schemas/snd.xml @@ -0,0 +1,367 @@ + + + + + DETAILED + /snd/app.view?#/packages/new + + + + + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + DETAILED + /snd/app.view?#/packages/new + + + + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + DETAILED + /snd/app.view?#/categories + + + + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + /snd/app.view?#/categories + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + DETAILED + /snd/app.view?#/projects/new + + + + + + + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + DETAILED + /snd/app.view?#/projects/new + + + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + + + + + + + + + NOLOOKUP + + + + + NOLOOKUP + + + + + + true + + + true + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + + + + + + + + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + DETAILED + + + + + + + true + true + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + DETAILED + + + + + + + + true + true + + + + + + + + lsidtype + true + true + false + + ObjectUri + Object + exp + + + +
+ + + + + + + + + + +
+ \ No newline at end of file diff --git a/snd/resources/views/app.html b/snd/resources/views/app.html new file mode 100644 index 000000000..865e670f4 --- /dev/null +++ b/snd/resources/views/app.html @@ -0,0 +1 @@ +
\ No newline at end of file diff --git a/snd/resources/views/app.view.xml b/snd/resources/views/app.view.xml new file mode 100644 index 000000000..dfe5ab995 --- /dev/null +++ b/snd/resources/views/app.view.xml @@ -0,0 +1,7 @@ + + + + + + + diff --git a/snd/resources/views/appDev.html b/snd/resources/views/appDev.html new file mode 100644 index 000000000..dca3e6d85 --- /dev/null +++ b/snd/resources/views/appDev.html @@ -0,0 +1,2 @@ +
+ \ No newline at end of file diff --git a/snd/resources/views/appDev.view.xml b/snd/resources/views/appDev.view.xml new file mode 100644 index 000000000..0737af934 --- /dev/null +++ b/snd/resources/views/appDev.view.xml @@ -0,0 +1,6 @@ + + + + + + diff --git a/snd/resources/views/importPackages.html b/snd/resources/views/importPackages.html new file mode 100644 index 000000000..16b712269 --- /dev/null +++ b/snd/resources/views/importPackages.html @@ -0,0 +1,39 @@ +
+
+ + diff --git a/snd/resources/views/importPackages.view.xml b/snd/resources/views/importPackages.view.xml new file mode 100644 index 000000000..c9f1f6c16 --- /dev/null +++ b/snd/resources/views/importPackages.view.xml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/snd/resources/views/test.html b/snd/resources/views/test.html new file mode 100644 index 000000000..ad077b778 --- /dev/null +++ b/snd/resources/views/test.html @@ -0,0 +1,74 @@ + +
+ + + + +
+
+ Initializing data... +
+
+
+ + \ No newline at end of file diff --git a/snd/resources/views/test.view.xml b/snd/resources/views/test.view.xml new file mode 100644 index 000000000..61dec3bcd --- /dev/null +++ b/snd/resources/views/test.view.xml @@ -0,0 +1,10 @@ + + + + + + + + + + \ No newline at end of file diff --git a/snd/schemas/snd.xsd b/snd/schemas/snd.xsd new file mode 100644 index 000000000..8c8032fd1 --- /dev/null +++ b/snd/schemas/snd.xsd @@ -0,0 +1,79 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/snd/src/client/app.tsx b/snd/src/client/app.tsx new file mode 100644 index 000000000..a454c95de --- /dev/null +++ b/snd/src/client/app.tsx @@ -0,0 +1,67 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +// React +import * as React from 'react'; +import * as ReactDom from 'react-dom'; + +// Redux +import { applyMiddleware, compose, createStore } from 'redux'; +import { Provider } from 'react-redux'; +import { composeWithDevTools } from 'redux-devtools-extension'; + +// Routing +import { createBrowserHistory, createHashHistory } from 'history'; +import { Route } from 'react-router-dom'; +import { ConnectedRouter, routerMiddleware } from 'react-router-redux'; + +// Middleware +import thunk from 'redux-thunk'; + +// Components +import { App } from './containers/App/App'; + +// Reducers +import { reducers } from './reducers/index'; + +// switch history to createBrowser history after servlet work +const history = createHashHistory(); +const middleware = applyMiddleware(thunk, routerMiddleware(history)); + +const storeCreator = compose( + middleware +)(createStore); +const store = storeCreator( + reducers + // uncomment following line to view redux dev tools in chrome + // ,composeWithDevTools() +); + +jQuery(() => { + ReactDom.render( + +
+ { /* ConnectedRouter will use the store from Provider automatically */ } + +
+ +
+ +
+ , + document.getElementById('app') + ); +}); \ No newline at end of file diff --git a/snd/src/client/components/Categories/CategoriesSelectResults.tsx b/snd/src/client/components/Categories/CategoriesSelectResults.tsx new file mode 100644 index 000000000..c7843cea9 --- /dev/null +++ b/snd/src/client/components/Categories/CategoriesSelectResults.tsx @@ -0,0 +1,150 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { ListGroupItem } from 'react-bootstrap' + +import { LabKeyQueryRowPropertyProps } from '../../query/model' + +// Results +interface CategoriesSelectResultsProps { + data?: {[key: string]: LabKeyQueryRowPropertyProps} + dataIds?: Array + disabled?: boolean + handleSelect?: (id: number) => any + focused?: boolean + selected?: Array +} + +export class CategoriesSelectResults extends React.Component { + + renderSelected() { + const { data, selected } = this.props; + if (selected && selected.length) { + return ( +
+ {selected.map((id, i) => { + return ( + this.props.handleSelect(id)}> +
+ {[data[id]['CategoryId'].value, data[id]['Description'].value].join(' ')} + +   + +
+ + ) + })} +
+
+ ) + } + + return null; + } + + renderSelectedCondensed() { + const { data, disabled, selected } = this.props; + + let text; + if (selected && selected.length) { + text = selected.map((id) => { + return [data[id]['CategoryId'].value, data[id]['Description'].value].join('-'); + }).join(', '); + + } + else { + text = 'No categories assigned' + } + // todo: disabled version will show white block where '...' would be, need to figure out dynamic background color + return ( +
+
+
+ {text} +
+ +
+
+ ) + + } + + renderOptions() { + const { data, dataIds } = this.props; + + if (data && dataIds.length) { + return ( +
+ {dataIds.map((id, i) => { + return ( + this.props.handleSelect(id)}> +
+ {[data[id]['CategoryId'].value, data[id]['Description'].value].join(' ')} +
+ + + ) + })} +
+ + ) + } + + return ( + +
+ No results found +
+ + ) + } + + render() { + const { focused } = this.props; + + if (focused) { + return ( +
+
+ {this.renderSelected()} + {this.renderOptions()} +
+
+ ) + } + + return ( +
+ {this.renderSelectedCondensed()} +
+ ) + } +} \ No newline at end of file diff --git a/snd/src/client/components/Crumb/Crumb.tsx b/snd/src/client/components/Crumb/Crumb.tsx new file mode 100644 index 000000000..c219b1df8 --- /dev/null +++ b/snd/src/client/components/Crumb/Crumb.tsx @@ -0,0 +1,35 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { Link } from 'react-router-dom'; + +export class Crumb extends React.Component { + + render() { + const {crumbNav, crumbName, clearAllErrors} = this.props; + + return ( +
+ clearAllErrors()}> + +

{crumbName}

+ +
+ ); + } +} \ No newline at end of file diff --git a/snd/src/client/components/Form/Attributes.tsx b/snd/src/client/components/Form/Attributes.tsx new file mode 100644 index 000000000..5604a28ec --- /dev/null +++ b/snd/src/client/components/Form/Attributes.tsx @@ -0,0 +1,244 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { PropertyDescriptor } from '../../containers/Wizards/model' + +import { CheckboxInput } from './Checkbox' +import { DataTypeSelect } from './DataTypeSelect' +import { LookupKeyInput } from './LookupKeyInput' +import { NumericInput } from './NumericInput' +import { TextInput } from './TextInput' +import { OrderSelect } from "./OrderSelect"; + +interface AttributeColumnProps { + disabled?: boolean + inputComponent?: (props) => JSX.Element + label?: string + name: string + required?: boolean + width?: string +} + +const ATTRIBUTE_COLUMNS: Array = [ + { + disabled: true, + inputComponent: TextInput, + label: 'Key', + name: 'name', + required: true, + width: '7vw' + }, + { + inputComponent: LookupKeyInput, + label: 'Lookup Key', + name: 'lookupKey', + required: false, + width: '13vw' + }, + { + inputComponent: DataTypeSelect, + label: 'Data Type', + name: 'rangeURI', + required: true, + width: '8vw' + }, + { + inputComponent: TextInput, + label: 'Label', + name: 'label', + required: false, + width: '13vw' + }, + { + inputComponent: NumericInput, + label: 'Min', + name: 'min', + required: false, + width: '8vw' + }, + { + inputComponent: NumericInput, + label: 'Max', + name: 'max', + required: false, + width: '8vw' + }, + { + inputComponent: TextInput, + label: 'Format', + name: 'format', + required: false, + width: '8vw' + }, + { + inputComponent: TextInput, + label: 'Default', + name: 'defaultValue', + required: false, + width: '13vw' + }, + { + inputComponent: OrderSelect, + label: 'Order', + name: 'sortOrder', + required: false, + width: '12vw' + }, + { + inputComponent: CheckboxInput, + label: 'Req.', + name: 'required', + required: false, + width: '5vw' + }, + { + inputComponent: TextInput, + label: 'Redacted Text', + name: 'redactedText', + required: false, + width: '13vw' + } +]; + +const AttributesGridHeader = () => { + return ( + + + {ATTRIBUTE_COLUMNS.map((col: AttributeColumnProps, i: number) => { + return ( + + {col.label}{col.required ? ' *' : ''} + + ) + })} + + + ) +}; + +class AttributesGridBody extends React.Component { + constructor(props) { + super(props); + + this.handleChange = this.handleChange.bind(this); + } + + handleChange(event: React.ChangeEvent) { + const { handleFieldChange } = this.props; + handleFieldChange(event); + } + + render() { + const { attributes, attributeLookups, readOnly } = this.props; + let disabled = readOnly; + if (attributes && attributes.length) { + return ( + + {attributes.map((attribute, i) => { + return ( + + {ATTRIBUTE_COLUMNS.map((col: AttributeColumnProps, j: number) => { + + // Only enable format for double + if (col.name === 'format' && attribute.rangeURI != 'double') { + disabled = true; + } + else { + disabled = readOnly; + } + + // Change default field based on lookup key + let lookups = attributeLookups; + if (col.name === 'defaultValue') { + if (attribute.lookupValues !== null) { + col.inputComponent = LookupKeyInput; + lookups = attribute.lookupValues; + // attribute.defaultValue = attribute.defaultLookups[0].value; + } + else { + col.inputComponent = TextInput + } + } + + // Disable data type if lookup key selected + if (col.name === 'rangeURI' && attribute.lookupKey && attribute.lookupKey !== '') { + disabled = true; + attribute[col.name] = "string"; + } + + const props = { + attribute, + attributeId: i, + attributeLookups: lookups, + disabled: col.disabled || disabled, + first: i === 0, + last: i === attributes.length - 1, + name: `attributes_${attribute.sortOrder}_${col.name}`, + onChange: this.handleChange, + value: attribute[col.name], + required: col.required + }; + return ( + + {React.createElement(col.inputComponent, props)} + + ) + })} + + ) + })} + + ) + } + + return ( + + + No tokens added + + + ); + } +} + +interface AttributesGridProps { + attributes: Array + attributeLookups?: Array<{label: string, value: string}> + handleFieldChange?: (evt) => void + narrative: string + readOnly?: boolean +} + +export class Attributes extends React.Component { + render() { + const { attributes, attributeLookups, handleFieldChange, narrative, readOnly } = this.props; + + return ( +
+ + + +
+
+ ) + } +} + diff --git a/snd/src/client/components/Form/Checkbox.tsx b/snd/src/client/components/Form/Checkbox.tsx new file mode 100644 index 000000000..fa217f13f --- /dev/null +++ b/snd/src/client/components/Form/Checkbox.tsx @@ -0,0 +1,65 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { WrappedFieldProps } from 'redux-form'; + +interface FieldCheckboxInputProps { + disabled?: boolean + required?: boolean +} + +export const FieldCheckboxInput = (field: WrappedFieldProps & FieldCheckboxInputProps) => { + const checked = field.input.value; + return ( + + + {field.meta.touched && field.meta.error ? +
+ {field.meta.error} +
+ : null} + + ); +}; + +interface CheckboxInputProps { + disabled?: boolean + name?: string + onChange?: React.EventHandler> + required?: boolean + value?: boolean +} + +export const CheckboxInput = (props: CheckboxInputProps) => { + return ( + + + + ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/DataTypeSelect.tsx b/snd/src/client/components/Form/DataTypeSelect.tsx new file mode 100644 index 000000000..5542c22bc --- /dev/null +++ b/snd/src/client/components/Form/DataTypeSelect.tsx @@ -0,0 +1,102 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { WrappedFieldProps } from 'redux-form'; + +interface FieldDataTypeSelectProps { + disabled?: boolean + required?: boolean +} + +export const FieldDataTypeSelect = (field: WrappedFieldProps<{}> & FieldDataTypeSelectProps) => { + return ( +
+ + {field.meta.touched && field.meta.error ? +
+ {field.meta.error} +
+ : null} +
+ ); +}; + +const DataTypeOptions: Array<{label: string, value: string}> = [ + { + value: 'string', + label: 'String' + }, + { + value: 'int', + label: 'Integer' + }, + { + value: 'double', + label: 'Decimal' + }, + { + value: 'boolean', + label: 'Boolean' + }, + { + value: 'date', + label: 'Date' + }, + { + value: 'dateTime', + label: 'Date Time' + }, + { + value: 'ParticipantId', + label: 'Id' + } + +]; + +interface DataTypeSelectProps { + disabled?: boolean + name?: string + onChange?: React.EventHandler> + required?: boolean + value?: string +} + +export const DataTypeSelect = (props: DataTypeSelectProps) => { + return ( +
+ +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/DatePicker.tsx b/snd/src/client/components/Form/DatePicker.tsx new file mode 100644 index 000000000..7175dfdc4 --- /dev/null +++ b/snd/src/client/components/Form/DatePicker.tsx @@ -0,0 +1,64 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +import * as React from 'react'; + +interface DatePickerProps { + disabled?: boolean + name?: string + onChange?: any + required?: boolean + value?: string +} + +export const DatePicker = (props: DatePickerProps) => { + const { value } = props; + let dateString = "", year, month, day; + + if (value != null && value != '') { + let dateParts, date = value.split(' ')[0]; + if (date.indexOf('-') !== -1) { + dateParts = date.split('-'); + } else { + dateParts = date.split('/'); + } + year = dateParts[0]; + month = dateParts[1]; + day = dateParts[2]; + dateString = year + '-' + + (month.toString().length === 1 ? '0' + month : month) + '-' + + (day.toString().length === 1 ? '0' + day : day); + } + + const disabledStyle = { + backgroundColor: '#EEEEEE' + }; + + return ( +
+ +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/EmailInput.tsx b/snd/src/client/components/Form/EmailInput.tsx new file mode 100644 index 000000000..8f2d302c6 --- /dev/null +++ b/snd/src/client/components/Form/EmailInput.tsx @@ -0,0 +1,35 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { WrappedFieldProps } from 'redux-form'; + +export const EmailInput = (field: WrappedFieldProps) => { + return ( +
+ + {field.meta.touched && field.meta.error ? +
+ {field.meta.error} +
+ : null} +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/ExtraFieldSelect.tsx b/snd/src/client/components/Form/ExtraFieldSelect.tsx new file mode 100644 index 000000000..b88327040 --- /dev/null +++ b/snd/src/client/components/Form/ExtraFieldSelect.tsx @@ -0,0 +1,45 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import {AttributeLookupProps} from "../../containers/Wizards/model"; + +interface ExtraFieldSelectProps { + disabled?: boolean + handleFieldChange?: any + index?: any + name?: string + options?: Array + val?: any +} + +export const ExtraFieldSelectInput = (props: ExtraFieldSelectProps) => { + + return ( +
+ +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/ExtraFields.tsx b/snd/src/client/components/Form/ExtraFields.tsx new file mode 100644 index 000000000..929bb5425 --- /dev/null +++ b/snd/src/client/components/Form/ExtraFields.tsx @@ -0,0 +1,129 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import {ControlLabel} from 'react-bootstrap' + +import {TextInput} from '../../components/Form/TextInput' +import {ExtraFieldSelectInput} from "./ExtraFieldSelect"; +import {VIEW_TYPES} from "../../containers/App/constants"; + +interface ExtraFieldsProps +{ + disabled?: any + extraFields?: any + handleFieldChange?: any + name?: string + revisedFields?: boolean + perRow: number + index?: number + displayCols: number + key: string + view?: VIEW_TYPES +} + +export class ExtraFields extends React.Component +{ + private staticVals: Array + constructor(props) { + super(props); + + if (this.props.revisedFields) { + this.staticVals = this.props.extraFields.map((extra) => { + return extra.value; + }); + } + } + + render() + { + const {extraFields, disabled, handleFieldChange, revisedFields, displayCols, index, perRow, key} = this.props; + let count = index - 1; + let colClass = "col-xs-" + displayCols; + let start = index ? index : 0; + + if (extraFields && extraFields.length) + { + let fields = extraFields.slice(start, start + perRow); // One row + if (fields.length > 0) + { + let divClass = "row clearfix"; + if (index != 0) + divClass += " margin-top"; + + return ( +
+
+ {fields.map((extra) => { + let {name, label} = extra; + if (!label) + label = name; + + return ( +
+ {label} +
+ ); + } + )} +
+
+ {fields.map((extra, i) => { + let {lookupValues, value, name} = extra; + count++; + return ( + +
+ {lookupValues ? ( +
+ {React.createElement(ExtraFieldSelectInput, + { + disabled: disabled || revisedFields, + options: lookupValues, + handleFieldChange: revisedFields ? null : handleFieldChange, + val: revisedFields ? this.staticVals[i + index] : value, + name: name + (revisedFields ? 'Old' : ''), + index: count + } + )} +
+ ) : ( +
+ {React.createElement(TextInput, + { + disabled: disabled || revisedFields, + value: revisedFields ? this.staticVals[i + index] : value, + onChange: revisedFields ? null : handleFieldChange, + name: ('extraFields_' + count + '_' + name + (revisedFields ? 'Old' : '')) + } + )} +
+ )} +
+ ); + } + )} +
+
+ ); + } + return
+ } + + return
+ } +} diff --git a/snd/src/client/components/Form/IdInput.tsx b/snd/src/client/components/Form/IdInput.tsx new file mode 100644 index 000000000..0ffaa1352 --- /dev/null +++ b/snd/src/client/components/Form/IdInput.tsx @@ -0,0 +1,51 @@ +/* + * Copyright (c) 2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { WrappedFieldProps } from 'redux-form'; + +import {VIEW_TYPES} from "../../containers/App/constants"; + +interface IdInputProps { + view?: VIEW_TYPES +} + +interface IdInputProps { + name?: string + onChange?: any + value?: number + view?: VIEW_TYPES +} + +export const IdInput = (props: IdInputProps ) => { + const { onChange, value, view } = props; + // Check if the view is Clone or New and if so hide the pkgId value as this will be set by the server + + const idValue = view !== VIEW_TYPES.PACKAGE_CLONE && view !== VIEW_TYPES.PACKAGE_NEW && view !== VIEW_TYPES.PROJECT_NEW as any ? value : ''; + + return ( +
+ +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/LookupKeyInput.tsx b/snd/src/client/components/Form/LookupKeyInput.tsx new file mode 100644 index 000000000..605879e4c --- /dev/null +++ b/snd/src/client/components/Form/LookupKeyInput.tsx @@ -0,0 +1,52 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; + +// add error check type behavior looking for schema.query format +interface LookupKeyInputProps { + attribute?: any + attributeId?: any + attributeLookups?: any + disabled?: boolean + name?: string + onChange?: React.EventHandler> + required?: boolean + value?: string +} + +export const LookupKeyInput = (props: LookupKeyInputProps) => { + let value = ''; + + if (props.value) { + value = props.value; + } + + return ( +
+ +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/NumericInput.tsx b/snd/src/client/components/Form/NumericInput.tsx new file mode 100644 index 000000000..af3afb62f --- /dev/null +++ b/snd/src/client/components/Form/NumericInput.tsx @@ -0,0 +1,39 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; + +interface NumericInputProps { + disabled?: boolean + name?: string + onChange?: React.EventHandler> + required?: boolean + value?: number +} + +export const NumericInput = (props: NumericInputProps) => { + return ( +
+ +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/OrderSelect.tsx b/snd/src/client/components/Form/OrderSelect.tsx new file mode 100644 index 000000000..20a01c1f9 --- /dev/null +++ b/snd/src/client/components/Form/OrderSelect.tsx @@ -0,0 +1,67 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { WrappedFieldProps } from 'redux-form'; + +const OrderOptions: Array<{label: string, value: string}> = [ + { + value: 'up', + label: 'Move Up' + }, + { + value: 'down', + label: 'Move Down' + } +]; + +interface OrderSelectProps { + disabled?: boolean + first?: boolean + last?: boolean + name?: string + onChange?: React.EventHandler> + required?: boolean + value?: string +} + +export const OrderSelect = (props: OrderSelectProps) => { + // order is 0 indexed, add 1 for display purposes + return ( +
+
+ {props.value + 1} +
+
+ +
+
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/PasswordInput.tsx b/snd/src/client/components/Form/PasswordInput.tsx new file mode 100644 index 000000000..0ddbe7b9b --- /dev/null +++ b/snd/src/client/components/Form/PasswordInput.tsx @@ -0,0 +1,35 @@ +/* + * Copyright (c) 2017 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; +import { WrappedFieldProps } from 'redux-form'; + +export const PasswordInput = (field: WrappedFieldProps) => { + return ( +
+ + {field.meta.touched && field.meta.error ? +
+ {field.meta.error} +
+ : null} +
+ ); +}; \ No newline at end of file diff --git a/snd/src/client/components/Form/TextArea.tsx b/snd/src/client/components/Form/TextArea.tsx new file mode 100644 index 000000000..5c4bc3d06 --- /dev/null +++ b/snd/src/client/components/Form/TextArea.tsx @@ -0,0 +1,42 @@ +/* + * Copyright (c) 2017-2018 LabKey Corporation + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +import * as React from 'react'; + +interface TextAreaProps { + cols?: number + disabled?: boolean + name?: string + onChange?: React.EventHandler> + required?: boolean + rows?: number + value?: string +} + +export const TextArea = (props: TextAreaProps) => { + return ( +
+