diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml index 68528b111..67348c484 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml @@ -149,5 +149,45 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml index 7b7a311c2..fca83b8e5 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml @@ -2417,6 +2417,676 @@ Organ Weights + + + Contains up to one row of PMIC_PETImagingData data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Credit To + + + varchar + Exam Num + + + varchar + Accession Num + + + varchar + PMIC Type + + + varchar + PET Radioisotope + + + double + PET Dose(mCi) + 0.0000 + + + double + PET Dose(MBq) + 0.0000 + + + varchar + Route + + + double + CTDIVol + 0.0000 + + + double + DLP + 0.0000 + + + double + Total Exam DLP + 0.0000 + + + varchar + Phantom + + + varchar + Wet lab use + + + varchar + Ligand and Comments + + + varchar + Image Upload Link + + + varchar + CTACType + + + varchar + CTACScanRange + + + PMIC_PETImagingData +
+ + Contains up to one row of PMIC_CTImagingData data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Credit To + + + varchar + Exam Num + + + varchar + Accession Num + + + varchar + PMIC Type + + + varchar + Contrast Type + + + double + Contrast Amount + 0.0000 + + + varchar + Route + + + double + CTDIVol + 0.0000 + + + double + DLP + 0.0000 + + + double + Total Exam DLP + 0.0000 + + + varchar + Wet lab use + + + varchar + Image Upload Link + + + PMIC_CTImagingData +
+ + Contains up to one row of PMIC_SPECTImagingData data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Credit To + + + varchar + Exam Num + + + varchar + Accession Num + + + varchar + PMIC Type + + + varchar + SPECT Isotope + + + double + SPECT Dose(mCi) + 0.0000 + + + double + SPECT Dose(MBq) + 0.0000 + + + varchar + Route + + + double + CTDIVol + 0.0000 + + + double + DLP + 0.0000 + + + double + Total Exam DLP + 0.0000 + + + varchar + Wet lab use + + + varchar + Ligand and Comments + + + varchar + Image Upload Link + + + PMIC_SPECTImagingData +
+ + Contains up to one row of PMIC_AngioImagingData data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Credit To + + + varchar + Exam Num + + + varchar + Accession Num + + + varchar + PMIC Type + + + double + CTDIVol + 0.000 + + + double + DLP + 0.000 + + + double + Total Exam DLP + 0.000 + + + varchar + Wet lab use + + + varchar + Image Upload Link + + + PMIC_AngioImagingData +
+ + Contains up to one row of PMIC_USImagingData data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Credit To + + + varchar + Exam Num + + + varchar + Accession Num + + + varchar + PMIC Type + + + varchar + Ultrasound Procedure + + + varchar + Wet lab use + + + PMIC_USImagingData +
+ + Contains up to one row of PMIC_DEXAImagingData data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Credit To + + + varchar + Exam Num + + + varchar + Accession Num + + + varchar + PMIC Type + + + varchar + DEXA Procedure + + + varchar + Animal Position + + + PMIC_DEXAImagingData +
+ + Contains up to one row of IPC_Sectioning data for each Animal/Date/objectId combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + varchar + Tissue Type + + + varchar + Paraffin Sectioning + + + varchar + SectionThickness + + + varchar + Frozen Sectioning + + + varchar + Special Instructions + + + IPC_Sectioning +
+ + Contains up to one row of IPC_Staining data for each Animal/Date/objectId combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + varchar + Tissue Type + + + varchar + + + + varchar + Special Stain + + + varchar + IHC + + + varchar + IHC Primary Antibody + + + varchar + Irrevelant Antibody + + + varchar + RNA Scope + + + varchar + Other + + + IPC_Staining +
+ + Contains up to one row of IPC_SlidePrinting data for each Animal/Date combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + varchar + Tissue Type + + + varchar + Project Notes + + + varchar + Additional text on slide + + + IPC_SlidePrinting +
+ + Contains up to one row of IPC_Other data for each Animal/Date/objectId combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + varchar + Service And Products + + + IPC_Other +
+ + Contains up to one row of IPC_ServiceRequestDetails data for each Animal/Date/objectId combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + integer + urn:ehr.labkey.org/#Project + + + varchar + Requested By + + + varchar + Email + + + varchar + Department + + + varchar + Pathologist + + + varchar + Investigator + + + varchar + Alias + + + varchar + Sample Dropoff/Pickup Location + + + IPC_ServiceRequestDetails +
+ + Contains up to one row of IPC_CassettePrinting data for each Animal/Date/objectId combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + varchar + Tissue Type + + + varchar + PI Label Text + + + IPC_CassettePrinting +
+ + Contains up to one row of IPC_ProcessingEmbedding data for each Animal/Date/objectId combination. + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + varchar + Tissue Type + + + varchar + Embedding + + + varchar + Fixation Method + + + varchar + Fixation Duration + + + varchar + Current Fixative + + + varchar + Processing Type + + + varchar + Embedding Instructions + + + IPC_ProcessingEmbedding +
+ +