From 8ae99cfdc5d2d4714f1f18aa3c4455620bde219b Mon Sep 17 00:00:00 2001 From: labkey-jeckels Date: Mon, 12 Apr 2021 13:29:48 -0700 Subject: [PATCH 1/4] Add PMIC and IPC datasets to study archive to make query validation happy --- .../datasets/datasets_manifest.xml | 40 + .../datasets/datasets_metadata.xml | 1369 ++++++++++++++++- 2 files changed, 1361 insertions(+), 48 deletions(-) diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml index 68528b111..67348c484 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_manifest.xml @@ -149,5 +149,45 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml index 7b7a311c2..97d32e9c9 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml @@ -2328,22 +2328,6 @@ varchar Organ/Tissue - - varchar - textarea - Remark - urn:ehr.labkey.org/#Remark - - - varchar - textarea - Description - urn:ehr.labkey.org/#Description - true - false - false - false - entityid Key @@ -2354,24 +2338,6 @@ false true - - varchar - Parent Id - urn:ehr.labkey.org/#ParentId - true - false - false - false - - - varchar - Taskid - urn:ehr.labkey.org/#TaskId - true - false - false - false - integer Project @@ -2386,20 +2352,6 @@ Account urn:ehr.labkey.org/#Account - - varchar - Performed By - urn:ehr.labkey.org/#PerformedBy - - - varchar - Requestid - urn:ehr.labkey.org/#RequestId - true - false - false - false - timestamp Enddate @@ -2459,4 +2411,1325 @@ StudyDetails + + + Contains up to one row of PMIC_PETImagingData data for each Animal/Date combination. + + + varchar + AnimalId + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Exam Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Charge To + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + FIXED_EDITABLE + 4000 + + + varchar + Credit To + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_ChargeTypes + chargetype + + FIXED_EDITABLE + 4000 + + + varchar + Exam Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Accession Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PMIC Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PET Radioisotope + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_PETRadioisotope_values + value + + FIXED_EDITABLE + 4000 + + + double + PET Dose(mCi) + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + PET Dose(MBq) + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + varchar + Route + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_Route_values + value + + FIXED_EDITABLE + 4000 + + + double + CTDIVol + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + DLP + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + Total Exam DLP + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + varchar + Phantom + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_Phantom_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Wet lab use + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_WetLabUse_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Ligand and Comments + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Image Upload Link + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + CTACType + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + CTACScanRange + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + PMIC_PETImagingData +
+ + Contains up to one row of PMIC_CTImagingData data for each Animal/Date combination. + + + varchar + AnimalId + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Exam Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Charge To + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + FIXED_EDITABLE + 4000 + + + varchar + Credit To + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_ChargeTypes + chargetype + + FIXED_EDITABLE + 4000 + + + varchar + Exam Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Accession Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PMIC Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Contrast Type + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_CTContrastType_values + value + + FIXED_EDITABLE + 4000 + + + double + Contrast Amount + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + varchar + Route + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_Route_values + value + + FIXED_EDITABLE + 4000 + + + double + CTDIVol + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + DLP + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + Total Exam DLP + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + varchar + Wet lab use + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_WetLabUse_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Image Upload Link + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + PMIC_CTImagingData +
+ + Contains up to one row of PMIC_SPECTImagingData data for each Animal/Date combination. + + + varchar + AnimalId + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Exam Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Charge To + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + FIXED_EDITABLE + 4000 + + + varchar + Credit To + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_ChargeTypes + chargetype + + FIXED_EDITABLE + 4000 + + + varchar + Exam Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Accession Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PMIC Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + SPECT Isotope + http://www.w3.org/2001/XMLSchema#string + false + FIXED_EDITABLE + 4000 + + + double + SPECT Dose(mCi) + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + SPECT Dose(MBq) + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + varchar + Route + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_Route_values + value + + FIXED_EDITABLE + 4000 + + + double + CTDIVol + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + DLP + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + double + Total Exam DLP + http://www.w3.org/2001/XMLSchema#double + 0.0000 + FIXED_EDITABLE + + + varchar + Wet lab use + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_WetLabUse_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Ligand and Comments + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Image Upload Link + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + PMIC_SPECTImagingData +
+ + Contains up to one row of PMIC_AngioImagingData data for each Animal/Date combination. + + + varchar + AnimalId + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Exam Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Charge To + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + FIXED_EDITABLE + 4000 + + + varchar + Credit To + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_ChargeTypes + chargetype + + FIXED_EDITABLE + 4000 + + + varchar + Exam Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Accession Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PMIC Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + double + CTDIVol + http://www.w3.org/2001/XMLSchema#double + 0.000 + FIXED_EDITABLE + + + double + DLP + http://www.w3.org/2001/XMLSchema#double + 0.000 + FIXED_EDITABLE + + + double + Total Exam DLP + http://www.w3.org/2001/XMLSchema#double + 0.000 + FIXED_EDITABLE + + + varchar + Wet lab use + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_WetLabUse_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Image Upload Link + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + PMIC_AngioImagingData +
+ + Contains up to one row of PMIC_USImagingData data for each Animal/Date combination. + + + varchar + AnimalId + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Exam Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Charge To + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + FIXED_EDITABLE + 4000 + + + varchar + Credit To + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_ChargeTypes + chargetype + + FIXED_EDITABLE + 4000 + + + varchar + Exam Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Accession Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PMIC Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Ultrasound Procedure + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_US_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Wet lab use + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_WetLabUse_values + value + + FIXED_EDITABLE + 4000 + + + PMIC_USImagingData +
+ + Contains up to one row of PMIC_DEXAImagingData data for each Animal/Date combination. + + + varchar + AnimalId + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Exam Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Charge To + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + FIXED_EDITABLE + 4000 + + + varchar + Credit To + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_ChargeTypes + chargetype + + FIXED_EDITABLE + 4000 + + + varchar + Exam Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Accession Num + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + PMIC Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + DEXA Procedure + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_DEXA_values + value + + FIXED_EDITABLE + 4000 + + + varchar + Animal Position + http://www.w3.org/2001/XMLSchema#string + false + + study + PMIC_DEXA_AnimalPosition_values + value + + FIXED_EDITABLE + 4000 + + + PMIC_DEXAImagingData +
+ + Contains up to one row of IPC_Sectioning data for each Animal/Date/objectId combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Tissue Type + http://www.w3.org/2001/XMLSchema#string + 4000 + + + varchar + Paraffin Sectioning + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + SectionThickness + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Frozen Sectioning + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Special Instructions + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + IPC_Sectioning +
+ + Contains up to one row of IPC_Staining data for each Animal/Date/objectId combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Tissue Type + http://www.w3.org/2001/XMLSchema#string + 4000 + + + varchar + + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Special Stain + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + IHC + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + IHC Primary Antibody + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Irrevelant Antibody + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + RNA Scope + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Other + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + IPC_Staining +
+ + Contains up to one row of IPC_SlidePrinting data for each Animal/Date combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Tissue Type + http://www.w3.org/2001/XMLSchema#string + 4000 + + + varchar + Project Notes + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Additional text on slide + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + IPC_SlidePrinting +
+ + Contains up to one row of IPC_Other data for each Animal/Date/objectId combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Service And Products + http://www.w3.org/2001/XMLSchema#string + 4000 + + + IPC_Other +
+ + Contains up to one row of IPC_ServiceRequestDetails data for each Animal/Date/objectId combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Center Project + urn:ehr.labkey.org/#Project + http://www.w3.org/2001/XMLSchema#string + false + + ehr + project + displayName + + 4000 + + + varchar + Requested By + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Email + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Department + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Pathologist + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Investigator + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Alias + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Sample Dropoff/Pickup Location + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + IPC_ServiceRequestDetails +
+ + Contains up to one row of IPC_CassettePrinting data for each Animal/Date/objectId combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Tissue Type + http://www.w3.org/2001/XMLSchema#string + 4000 + + + varchar + PI Label Text + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + IPC_CassettePrinting +
+ + Contains up to one row of IPC_ProcessingEmbedding data for each Animal/Date/objectId combination. + + + varchar + Id + Subject identifier + http://cpas.labkey.com/Study#ParticipantId + http://cpas.labkey.com/Study#ParticipantId + false + /ehr/participantView.view?participantId=${id} + + ptid + + + study + Animal + Id + + ALWAYS_OFF + 32 + + + timestamp + Date + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + false + DateTime + + + varchar + Tissue Type + http://www.w3.org/2001/XMLSchema#string + 4000 + + + varchar + Embedding + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Fixation Method + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Fixation Duration + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Current Fixative + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Processing Type + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + varchar + Embedding Instructions + http://www.w3.org/2001/XMLSchema#string + FIXED_EDITABLE + 4000 + + + IPC_ProcessingEmbedding +
From dfc43fe64df11907ee51887043fad8b9b222b051 Mon Sep 17 00:00:00 2001 From: labkey-jeckels Date: Mon, 12 Apr 2021 15:59:19 -0700 Subject: [PATCH 2/4] Slim down ID and Date fields --- .../datasets/datasets_metadata.xml | 221 +----------------- 1 file changed, 10 insertions(+), 211 deletions(-) diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml index 97d32e9c9..3d2248dd3 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml @@ -2308,21 +2308,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - false - - study - Animal - Id - + + ptid + timestamp - Date http://cpas.labkey.com/Study#VisitDate - false + http://cpas.labkey.com/Study#VisitDate varchar @@ -2417,30 +2411,15 @@ varchar - AnimalId - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 - + timestamp - Exam Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -2613,30 +2592,15 @@ varchar - AnimalId - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 - + timestamp - Exam Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -2768,30 +2732,15 @@ varchar - AnimalId - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 - + timestamp - Exam Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -2932,30 +2881,15 @@ varchar - AnimalId - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 - + timestamp - Exam Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3054,30 +2988,15 @@ varchar - AnimalId - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 - + timestamp - Exam Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3161,30 +3080,15 @@ varchar - AnimalId - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 - + timestamp - Exam Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3268,30 +3172,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3335,30 +3224,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3423,30 +3297,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3476,30 +3335,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3515,30 +3359,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3610,30 +3439,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar @@ -3656,30 +3470,15 @@ varchar - Id - Subject identifier http://cpas.labkey.com/Study#ParticipantId - http://cpas.labkey.com/Study#ParticipantId - false - /ehr/participantView.view?participantId=${id} ptid - - study - Animal - Id - - ALWAYS_OFF - 32 timestamp - Date http://cpas.labkey.com/Study#VisitDate http://cpas.labkey.com/Study#VisitDate - false - DateTime varchar From 371e45d0de78a108af75e5d5099dabeac238e486 Mon Sep 17 00:00:00 2001 From: labkey-jeckels Date: Tue, 13 Apr 2021 19:01:25 -0700 Subject: [PATCH 3/4] Snip scale for text fields --- .../datasets/datasets_metadata.xml | 87 ------------------- 1 file changed, 87 deletions(-) diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml index 3d2248dd3..d8797e454 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml @@ -2433,7 +2433,6 @@ displayName FIXED_EDITABLE - 4000 varchar @@ -2446,28 +2445,24 @@ chargetype FIXED_EDITABLE - 4000 varchar Exam Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Accession Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar PMIC Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar @@ -2480,7 +2475,6 @@ value FIXED_EDITABLE - 4000 double @@ -2507,7 +2501,6 @@ value FIXED_EDITABLE - 4000 double @@ -2541,7 +2534,6 @@ value FIXED_EDITABLE - 4000 varchar @@ -2554,35 +2546,30 @@ value FIXED_EDITABLE - 4000 varchar Ligand and Comments http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Image Upload Link http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar CTACType http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar CTACScanRange http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 PMIC_PETImagingData @@ -2614,7 +2601,6 @@ displayName FIXED_EDITABLE - 4000 varchar @@ -2627,28 +2613,24 @@ chargetype FIXED_EDITABLE - 4000 varchar Exam Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Accession Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar PMIC Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar @@ -2661,7 +2643,6 @@ value FIXED_EDITABLE - 4000 double @@ -2681,7 +2662,6 @@ value FIXED_EDITABLE - 4000 double @@ -2715,14 +2695,12 @@ value FIXED_EDITABLE - 4000 varchar Image Upload Link http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 PMIC_CTImagingData @@ -2754,7 +2732,6 @@ displayName FIXED_EDITABLE - 4000 varchar @@ -2767,28 +2744,24 @@ chargetype FIXED_EDITABLE - 4000 varchar Exam Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Accession Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar PMIC Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar @@ -2796,7 +2769,6 @@ http://www.w3.org/2001/XMLSchema#string false FIXED_EDITABLE - 4000 double @@ -2823,7 +2795,6 @@ value FIXED_EDITABLE - 4000 double @@ -2857,21 +2828,18 @@ value FIXED_EDITABLE - 4000 varchar Ligand and Comments http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Image Upload Link http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 PMIC_SPECTImagingData @@ -2903,7 +2871,6 @@ displayName FIXED_EDITABLE - 4000 varchar @@ -2916,28 +2883,24 @@ chargetype FIXED_EDITABLE - 4000 varchar Exam Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Accession Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar PMIC Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 double @@ -2971,14 +2934,12 @@ value FIXED_EDITABLE - 4000 varchar Image Upload Link http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 PMIC_AngioImagingData @@ -3010,7 +2971,6 @@ displayName FIXED_EDITABLE - 4000 varchar @@ -3023,28 +2983,24 @@ chargetype FIXED_EDITABLE - 4000 varchar Exam Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Accession Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar PMIC Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar @@ -3057,7 +3013,6 @@ value FIXED_EDITABLE - 4000 varchar @@ -3070,7 +3025,6 @@ value FIXED_EDITABLE - 4000 PMIC_USImagingData @@ -3102,7 +3056,6 @@ displayName FIXED_EDITABLE - 4000 varchar @@ -3115,28 +3068,24 @@ chargetype FIXED_EDITABLE - 4000 varchar Exam Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Accession Num http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar PMIC Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar @@ -3149,7 +3098,6 @@ value FIXED_EDITABLE - 4000 varchar @@ -3162,7 +3110,6 @@ value FIXED_EDITABLE - 4000 PMIC_DEXAImagingData @@ -3186,35 +3133,30 @@ varchar Tissue Type http://www.w3.org/2001/XMLSchema#string - 4000 varchar Paraffin Sectioning http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar SectionThickness http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Frozen Sectioning http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Special Instructions http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 IPC_Sectioning @@ -3238,56 +3180,48 @@ varchar Tissue Type http://www.w3.org/2001/XMLSchema#string - 4000 varchar http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Special Stain http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar IHC http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar IHC Primary Antibody http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Irrevelant Antibody http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar RNA Scope http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Other http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 IPC_Staining @@ -3311,21 +3245,18 @@ varchar Tissue Type http://www.w3.org/2001/XMLSchema#string - 4000 varchar Project Notes http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Additional text on slide http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 IPC_SlidePrinting @@ -3349,7 +3280,6 @@ varchar Service And Products http://www.w3.org/2001/XMLSchema#string - 4000 IPC_Other @@ -3380,56 +3310,48 @@ project displayName - 4000 varchar Requested By http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Email http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Department http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Pathologist http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Investigator http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Alias http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Sample Dropoff/Pickup Location http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 IPC_ServiceRequestDetails @@ -3453,14 +3375,12 @@ varchar Tissue Type http://www.w3.org/2001/XMLSchema#string - 4000 varchar PI Label Text http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 IPC_CassettePrinting @@ -3484,49 +3404,42 @@ varchar Tissue Type http://www.w3.org/2001/XMLSchema#string - 4000 varchar Embedding http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Fixation Method http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Fixation Duration http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Current Fixative http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Processing Type http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 varchar Embedding Instructions http://www.w3.org/2001/XMLSchema#string FIXED_EDITABLE - 4000 IPC_ProcessingEmbedding From 3c3f8279e3cb0b461ef8ab68e58c2aa3ad0a87ed Mon Sep 17 00:00:00 2001 From: labkey-jeckels Date: Fri, 16 Apr 2021 11:10:09 -0700 Subject: [PATCH 4/4] Rearrange to try avoiding problem deleting folder --- .../datasets/datasets_metadata.xml | 533 ++++-------------- 1 file changed, 109 insertions(+), 424 deletions(-) diff --git a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml index d8797e454..fca83b8e5 100644 --- a/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml +++ b/onprc_ehr/resources/referenceStudy/datasets/datasets_metadata.xml @@ -2308,20 +2308,42 @@ varchar + Id + Subject identifier http://cpas.labkey.com/Study#ParticipantId - - ptid - + false + + study + Animal + Id + timestamp + Date http://cpas.labkey.com/Study#VisitDate - http://cpas.labkey.com/Study#VisitDate + false varchar Organ/Tissue + + varchar + textarea + Remark + urn:ehr.labkey.org/#Remark + + + varchar + textarea + Description + urn:ehr.labkey.org/#Description + true + false + false + false + entityid Key @@ -2332,6 +2354,24 @@ false true + + varchar + Parent Id + urn:ehr.labkey.org/#ParentId + true + false + false + false + + + varchar + Taskid + urn:ehr.labkey.org/#TaskId + true + false + false + false + integer Project @@ -2346,6 +2386,20 @@ Account urn:ehr.labkey.org/#Account + + varchar + Performed By + urn:ehr.labkey.org/#PerformedBy + + + varchar + Requestid + urn:ehr.labkey.org/#RequestId + true + false + false + false + timestamp Enddate @@ -2363,48 +2417,6 @@ Organ Weights - - - - varchar - http://cpas.labkey.com/Study#ParticipantId - - ptid - - - - timestamp - http://cpas.labkey.com/Study#VisitDate - http://cpas.labkey.com/Study#VisitDate - - - timestamp - urn:ehr.labkey.org/#EndDate - - - varchar - - - varchar - - - varchar - - - varchar - - - integer - urn:ehr.labkey.org/#Project - - - entityid - urn:ehr.labkey.org/#ObjectId - true - - - StudyDetails -
Contains up to one row of PMIC_PETImagingData data for each Animal/Date combination. @@ -2422,154 +2434,81 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Charge To + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - - FIXED_EDITABLE varchar Credit To - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_ChargeTypes - chargetype - - FIXED_EDITABLE varchar Exam Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Accession Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PMIC Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PET Radioisotope - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_PETRadioisotope_values - value - - FIXED_EDITABLE double PET Dose(mCi) - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double PET Dose(MBq) - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE varchar Route - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_Route_values - value - - FIXED_EDITABLE double CTDIVol - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double DLP - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double Total Exam DLP - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE varchar Phantom - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_Phantom_values - value - - FIXED_EDITABLE varchar Wet lab use - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_WetLabUse_values - value - - FIXED_EDITABLE varchar Ligand and Comments - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Image Upload Link - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar CTACType - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar CTACScanRange - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE PMIC_PETImagingData @@ -2590,117 +2529,60 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Charge To + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - - FIXED_EDITABLE varchar Credit To - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_ChargeTypes - chargetype - - FIXED_EDITABLE varchar Exam Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Accession Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PMIC Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Contrast Type - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_CTContrastType_values - value - - FIXED_EDITABLE double Contrast Amount - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE varchar Route - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_Route_values - value - - FIXED_EDITABLE double CTDIVol - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double DLP - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double Total Exam DLP - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE varchar Wet lab use - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_WetLabUse_values - value - - FIXED_EDITABLE varchar Image Upload Link - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE PMIC_CTImagingData @@ -2721,125 +2603,69 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Charge To + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - - FIXED_EDITABLE varchar Credit To - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_ChargeTypes - chargetype - - FIXED_EDITABLE varchar Exam Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Accession Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PMIC Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar SPECT Isotope - http://www.w3.org/2001/XMLSchema#string - false - FIXED_EDITABLE double SPECT Dose(mCi) - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double SPECT Dose(MBq) - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE varchar Route - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_Route_values - value - - FIXED_EDITABLE double CTDIVol - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double DLP - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE double Total Exam DLP - http://www.w3.org/2001/XMLSchema#double 0.0000 - FIXED_EDITABLE varchar Wet lab use - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_WetLabUse_values - value - - FIXED_EDITABLE varchar Ligand and Comments - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Image Upload Link - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE PMIC_SPECTImagingData @@ -2860,86 +2686,47 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Charge To + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - - FIXED_EDITABLE varchar Credit To - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_ChargeTypes - chargetype - - FIXED_EDITABLE varchar Exam Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Accession Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PMIC Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE double CTDIVol - http://www.w3.org/2001/XMLSchema#double 0.000 - FIXED_EDITABLE double DLP - http://www.w3.org/2001/XMLSchema#double 0.000 - FIXED_EDITABLE double Total Exam DLP - http://www.w3.org/2001/XMLSchema#double 0.000 - FIXED_EDITABLE varchar Wet lab use - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_WetLabUse_values - value - - FIXED_EDITABLE varchar Image Upload Link - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE PMIC_AngioImagingData @@ -2960,71 +2747,32 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Charge To + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - - FIXED_EDITABLE varchar Credit To - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_ChargeTypes - chargetype - - FIXED_EDITABLE varchar Exam Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Accession Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PMIC Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Ultrasound Procedure - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_US_values - value - - FIXED_EDITABLE varchar Wet lab use - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_WetLabUse_values - value - - FIXED_EDITABLE PMIC_USImagingData @@ -3045,71 +2793,32 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Charge To + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - - FIXED_EDITABLE varchar Credit To - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_ChargeTypes - chargetype - - FIXED_EDITABLE varchar Exam Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Accession Num - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar PMIC Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar DEXA Procedure - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_DEXA_values - value - - FIXED_EDITABLE varchar Animal Position - http://www.w3.org/2001/XMLSchema#string - false - - study - PMIC_DEXA_AnimalPosition_values - value - - FIXED_EDITABLE PMIC_DEXAImagingData @@ -3132,31 +2841,22 @@ varchar Tissue Type - http://www.w3.org/2001/XMLSchema#string varchar Paraffin Sectioning - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar SectionThickness - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Frozen Sectioning - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Special Instructions - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE IPC_Sectioning @@ -3179,49 +2879,34 @@ varchar Tissue Type - http://www.w3.org/2001/XMLSchema#string varchar - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Special Stain - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar IHC - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar IHC Primary Antibody - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Irrevelant Antibody - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar RNA Scope - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Other - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE IPC_Staining @@ -3244,19 +2929,14 @@ varchar Tissue Type - http://www.w3.org/2001/XMLSchema#string varchar Project Notes - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Additional text on slide - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE IPC_SlidePrinting @@ -3279,7 +2959,6 @@ varchar Service And Products - http://www.w3.org/2001/XMLSchema#string IPC_Other @@ -3300,58 +2979,36 @@ http://cpas.labkey.com/Study#VisitDate - varchar - Center Project + integer urn:ehr.labkey.org/#Project - http://www.w3.org/2001/XMLSchema#string - false - - ehr - project - displayName - varchar Requested By - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Email - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Department - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Pathologist - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Investigator - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Alias - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Sample Dropoff/Pickup Location - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE IPC_ServiceRequestDetails @@ -3374,13 +3031,10 @@ varchar Tissue Type - http://www.w3.org/2001/XMLSchema#string varchar PI Label Text - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE IPC_CassettePrinting @@ -3403,45 +3057,76 @@ varchar Tissue Type - http://www.w3.org/2001/XMLSchema#string varchar Embedding - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Fixation Method - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Fixation Duration - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Current Fixative - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Processing Type - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE varchar Embedding Instructions - http://www.w3.org/2001/XMLSchema#string - FIXED_EDITABLE IPC_ProcessingEmbedding
+ + + + + + varchar + http://cpas.labkey.com/Study#ParticipantId + + ptid + + + + timestamp + http://cpas.labkey.com/Study#VisitDate + http://cpas.labkey.com/Study#VisitDate + + + timestamp + urn:ehr.labkey.org/#EndDate + + + varchar + + + varchar + + + varchar + + + varchar + + + integer + urn:ehr.labkey.org/#Project + + + entityid + urn:ehr.labkey.org/#ObjectId + true + + + StudyDetails +