From 237fda10d026e507ddba447177d8d7729094f6f5 Mon Sep 17 00:00:00 2001
From: taimontgomery <35973177+taimontgomery@users.noreply.github.com>
Date: Wed, 2 Nov 2022 22:30:36 -0600
Subject: [PATCH 1/3] Update features file for ram1 data

---
 START_HERE/reference_data/features.csv | 7 +++++++
 1 file changed, 7 insertions(+)
 create mode 100644 START_HERE/reference_data/features.csv

diff --git a/START_HERE/reference_data/features.csv b/START_HERE/reference_data/features.csv
new file mode 100644
index 00000000..dc362190
--- /dev/null
+++ b/START_HERE/reference_data/features.csv
@@ -0,0 +1,7 @@
+Select for...,with value...,Classify as...,Source Filter,Type Filter,Hierarchy,Strand,5' End Nucleotide,Length,Overlap
+Class,mask,masked,,,1,both,all,all,Partial
+Class,miRNA,miRNA,,,2,sense,all,16-22,5' anchored
+Class,piRNA,piRNA-5'A,,,2,both,A,24-32,Full
+Class,piRNA,piRNA-5'T,,,2,both,T,24-32,Full
+Class,siRNA,siRNA,,,2,both,all,15-22,Full
+Class,unk,unknown,,,3,both,all,all,Full
\ No newline at end of file

From d682d9ce365e49dd30a51e3f6db390adabb28bb0 Mon Sep 17 00:00:00 2001
From: taimontgomery <35973177+taimontgomery@users.noreply.github.com>
Date: Wed, 2 Nov 2022 22:36:28 -0600
Subject: [PATCH 2/3] Update features file for ram1 data

---
 START_HERE/features.csv | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)
 mode change 100755 => 100644 START_HERE/features.csv

diff --git a/START_HERE/features.csv b/START_HERE/features.csv
old mode 100755
new mode 100644
index 66977d07..dc362190
--- a/START_HERE/features.csv
+++ b/START_HERE/features.csv
@@ -1,7 +1,7 @@
-Select for...,with value...,Classify as...,Source Filter,Type Filter,Hierarchy,Strand,5' End Nucleotide,Length,Overlap
-Class,mask,,,,1,both,all,all,Partial
-Class,miRNA,,,,2,sense,all,16-22,Full
-Class,piRNA,5pA,,,2,both,A,24-32,Full
-Class,piRNA,5pT,,,2,both,T,24-32,Full
-Class,siRNA,,,,2,both,all,15-22,Full
-Class,unk,,,,3,both,all,all,Full
\ No newline at end of file
+Select for...,with value...,Classify as...,Source Filter,Type Filter,Hierarchy,Strand,5' End Nucleotide,Length,Overlap
+Class,mask,masked,,,1,both,all,all,Partial
+Class,miRNA,miRNA,,,2,sense,all,16-22,5' anchored
+Class,piRNA,piRNA-5'A,,,2,both,A,24-32,Full
+Class,piRNA,piRNA-5'T,,,2,both,T,24-32,Full
+Class,siRNA,siRNA,,,2,both,all,15-22,Full
+Class,unk,unknown,,,3,both,all,all,Full
\ No newline at end of file

From 149b35bc7473cadddb5ed677cd8eb9ae9bedb571 Mon Sep 17 00:00:00 2001
From: taimontgomery <35973177+taimontgomery@users.noreply.github.com>
Date: Wed, 2 Nov 2022 22:42:08 -0600
Subject: [PATCH 3/3] Update features file for ram1 data

---
 START_HERE/reference_data/features.csv | 7 -------
 1 file changed, 7 deletions(-)
 delete mode 100644 START_HERE/reference_data/features.csv

diff --git a/START_HERE/reference_data/features.csv b/START_HERE/reference_data/features.csv
deleted file mode 100644
index dc362190..00000000
--- a/START_HERE/reference_data/features.csv
+++ /dev/null
@@ -1,7 +0,0 @@
-Select for...,with value...,Classify as...,Source Filter,Type Filter,Hierarchy,Strand,5' End Nucleotide,Length,Overlap
-Class,mask,masked,,,1,both,all,all,Partial
-Class,miRNA,miRNA,,,2,sense,all,16-22,5' anchored
-Class,piRNA,piRNA-5'A,,,2,both,A,24-32,Full
-Class,piRNA,piRNA-5'T,,,2,both,T,24-32,Full
-Class,siRNA,siRNA,,,2,both,all,15-22,Full
-Class,unk,unknown,,,3,both,all,all,Full
\ No newline at end of file