-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathindex.html
More file actions
163 lines (139 loc) · 11.7 KB
/
index.html
File metadata and controls
163 lines (139 loc) · 11.7 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
<html>
<!-- Mirrored from mullinslab.microbiol.washington.edu/ by HTTrack Website Copier/3.x [XR&CO'2014], Mon, 21 Jul 2025 17:59:50 GMT -->
<!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=utf-8" /><!-- /Added by HTTrack -->
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta http-equiv="Content-Style-Type" content="text/css">
<title></title>
<meta name="Generator" content="Cocoa HTML Writer">
<meta name="CocoaVersion" content="2299.77">
<style type="text/css">
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Times; -webkit-text-stroke: #000000}
p.p3 {margin: 0.0px 0.0px 12.0px 0.0px; font: 9.2px Helvetica; color: #000000}
p.p6 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Times; color: #0000e9; -webkit-text-stroke: #0000e9}
span.s1 {font-kerning: none}
span.s2 {font: 12.0px Times; font-kerning: none; color: #000000; -webkit-text-stroke: 0px #000000}
span.s3 {background-color: #ffffff}
span.s4 {text-decoration: underline ; font-kerning: none; color: #0000e9; -webkit-text-stroke: 0px #0000e9}
span.s5 {text-decoration: underline ; font-kerning: none}
</style>
</head>
<body>
<p class="p1"><span class="s1"> <!DOCTYPE html>
<html>
<head>
<title>Mullins Molecular Retrovirology Lab </title>
<link rel="stylesheet" href="style.css" />
<link rel="alternate" type="application/atom+xml" title="Atom feed" href="feed" />
<meta name="viewport" content="width=device-width, initial-scale=1">
<script src='https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-MML-AM_CHTML' async></script>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-136625084-1"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-136625084-1');
</script>
</head>
<body id="_mainpage">
<div id="container">
<header>
<h1>Mullins Molecular Retrovirology Lab</h1>
<div class="description">
<ul>
<li>Department of Microbiology</li>
<li>School of Medicine</li>
<li>University of Washington</li>
</ul>
</div>
</header>
<section id="nav">
<nav>
<ul>
<li class="here"><a href="index.html">Home</a></li>
<li class=""><a href="research/index.html">Research</a></li>
<li class=""><a href="publications/index.html">Publications</a></li>
<li class=""><a href="protocols/index.html">Protocols</a></li>
<li class=""><a href="people/index.html">People</a></li>
<li class=""><a href="contact/index.html">Contact</a></li>
<li class=""><a href="help/index.html">Help</a></li>
</ul>
</nav>
</section>
<section id="links">
<nav id="quicklinks">
<h2>Software & Tools</h2>
<ul>
<li><a href="http://indra.mullins.microbiol.washington.edu/">Bioinformatics Tools</a></li>
<li><a href="https://github.com/mullinslab">GitHub</a></li>
<li><a href="hiris/index.html">HIRIS</a></li>
<li><a href="HMA/index.html">HMA Subtyping Kit</a></li>
<li><a href="isdb/index.html">ISDB</a></li>
<li><a href="tcozy/index.html">TCozy</a></li>
<li><a href="https://viroverse.washington.edu/">Viroverse</a></li>
</ul>
</nav>
<nav id="lablinks">
<h2>Lab Links</h2>
<ul>
<li><a href="https://hercules.mullins.microbiol.washington.edu/pub/doc/">Computing Docs</a></li>
<li><a href="hiris/private/index.html">HIRIS (Private)</a></li>
<li><a href="https://tcozy.mullins.microbiol.washington.edu/ice-floe/">ICE Floe</a></li>
<li><a href="https://hercules.mullins.microbiol.washington.edu/git/">Internal Git</a></li>
<li><a href="twiki/index.html">Internal wiki</a></li>
<li><a href="https://viroverse.washington.edu/viroblast/">Local ViroBLAST</a></li>
<li><a href="https://redash.mullins.microbiol.washington.edu/">Redash</a></li>
<li><a href="https://mullinslab.slack.com/">Slack</a></li>
<li><a href="support/index.html">Ticketing system</a></li>
</ul>
</nav>
</section>
<div id="cfar"><a href="http://cfar.washington.edu/">
<img src="static/_img/2c/47ca/CFAR-logo-rev-10-22-18_4aa6fe47bc_500x157.jpg" width="500" height="157" srcset="/static/_img/2c/47ca/CFAR-logo-rev-10-22-18_4aa6fe47bc_500x157.jpg 1x, /static/_img/2c/47ca/CFAR-logo-rev-10-22-18_4aa6fe47bc_1000x314.jpg 2x" alt="University of Washington/Fred Hutch Center for AIDS Research">
</a></div>
<section id="content">
</span></p>
<h1 style="margin: 0.0px 0.0px 16.1px 0.0px; font: 24.0px Times; -webkit-text-stroke: #000000"><span class="s1"><b>Mullins Lab</b></span></h1>
<p class="p1"><span class="s1">
<div class="inset-right"><img src="static/_img/d5/6229/bob-lab_2abe1b41e0.jpg" width="220" height="146" alt="bob_lab.jpg"></div>
</span></p>
<p class="p3"><span class="s2">The Mullins laboratory is located in Building F on the South Lake Union campus of the University of Washington School of Medicine. </span><span class="s3">The wet lab portion of the Mullins laboratory is now closed. We still have a small group of investigators performing computational studies to provide insights into the relationship between HIV and its human hosts in an effort to assist the global fight against HIV and AIDS. We also continue to develop tools for computational studies and maintain our collaborations focused on HIV prevention efforts and reservoirs of HIV maintenance under antiretroviral therapy.<span class="Apple-converted-space"> </span></span></p>
<p class="p1"><span class="s1"> </span></p>
<h2 style="margin: 0.0px 0.0px 14.9px 0.0px; font: 18.0px Times; -webkit-text-stroke: #000000"><span class="s1"><b>Lab News</b></span></h2>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"></span></p>
<h3 style="margin: 0.0px 0.0px 14.0px 0.0px; font: 14.0px Times; -webkit-text-stroke: #000000"><span class="s1"><b>Phylobook Software Published in <em>Biotechniques</em></b></span></h3>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"><p>“Phylobook Software <a href="https://www.tandfonline.com/doi/full/10.2144/btn-2023-0056">Published in Biotechniques</a>.” Phylobook is a web application supporting the display, annotation and sharing of phylogenetic trees. More importantly, it provides for semi-automated lineage assignments and manual editing of the lineage assignments aided by match and mismatch plots. The software is <a href="https://github.com/MullinsLab/phylobook">available at GitHub</a>.
| News, 5 May 2024</p> </span></p>
<p class="p1"><span class="s1"> </span></p>
<p class="p6"><span class="s5"><a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitems.link%7D%7D">More news…</a></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"> </span></p>
<h2 style="margin: 0.0px 0.0px 14.9px 0.0px; font: 18.0px Times; -webkit-text-stroke: #000000"><span class="s1"><b>Recent Publications</b></span></h2>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"><p>Jeffrey C Furlong, Peter D Darley, Wenjie Deng, James I Mullins, Roger E Bumgarner (2024). <span class="title">Phylobook: a tool for display, clade annotation and extraction of sequences from molecular phylogenies.</span> <cite class="journalName">Biotechniques</cite> 2024 May 3. (<a href="http://ncbi.nlm.nih.gov/pubmed/38700279">pubmed</a>) (<a href="https://doi.org/10.2144/btn-2023-0056">doi</a>)</p> <a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitem.link%7D%7D"><span class="s4">More…</span></a> </span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"><p>Joy, J., Gervassi, A.L., Chen, L., Kirshenbaum, B., Styrchak, S., Ko, D., Mclaughlin, S., Shao, D., Kosmider, E., Edlefsen, P.T., Maenza, J., Collier, A.C., Mullins, J.I., Horton, H., and Frenkel, L.M.(2024).<span class="title">Antigen specificities and proviral integration sites differ in HIV-infected cells by timing of antiretroviral treatment initiation</span> <cite class="journalName">J. Clin. Invest.</cite> 2024 Jun 4:e159569(<a href="http://ncbi.nlm.nih.gov/pubmed/38833307">pubmed</a>) (<a href="https://doi.org/10.1172/JCI159569">doi</a>)</p> <a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitem.link%7D%7D"><span class="s4">More…</span></a> </span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"><p>Ko, D., McLaughlin, S., Deng, W., Mullins, J.I., Dragavon, J., Harb, S., Coombs, R.W., Frenkel, L.M.(2024).<span class="title">Development and validation of a genotypic assay to quantify CXCR4- and CCR5-tropic human immunodeficiency virus type-1 (HIV-1) populations and a comparison to Trofile™</span> <cite class="journalName">Viruses</cite> 2024 16, 510(<a href="http://ncbi.nlm.nih.gov/pubmed/38675853">pubmed</a>) (<a href="https://doi.org/10.3390/v16040510">doi</a>)</p> <a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitem.link%7D%7D"><span class="s4">More…</span></a> </span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"><p>Dylan H Westfall, Wenjie Deng, Alec Pankow, Hugh Murrell, Lennie Chen, Hong Zhao, Carolyn Williamson, Morgane Rolland, Ben Murrell, James I Mullins(2024).<span class="title">Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations-Application to HIV-1 quasispecies</span> <cite class="journalName">Virus Evol.</cite> 2024 Mar 2;10(1)(<a href="http://ncbi.nlm.nih.gov/pubmed/38765465">pubmed</a>) (<a href="https://doi.org/10.1093/ve/veae019">doi</a>)</p> <a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitem.link%7D%7D"><span class="s4">More…</span></a> </span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1"><p>Aniqa Shahid, Signe MacLennan, Bradley R Jones, Hanwei Sudderuddin, Zhong Dang, Kyle Cobarrubias, Maggie C Duncan, Natalie N Kinloch, Michael J Dapp, Nancie M Archin, Margaret A Fischl, Igho Ofotokun, Adaora Adimora, Stephen Gange, Bradley Aouizerat, Mark H Kuniholm, Seble Kassaye, James I Mullins, Harris Goldstein, Jeffrey B Joy, Kathryn Anastos, Zabrina L Brumme; MACS/WIHS combined cohort study (MWCSS) (2024).<span class="title">The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time.</span> <cite class="journalName">J. Virol.</cite> 2024 Feb 20;98(2):e0165523.(<a href="http://ncbi.nlm.nih.gov/pubmed/38214547">pubmed</a>) (<a href="https://doi.org/10.1128/jvi.01655-23">doi</a>)</p> <a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitem.link%7D%7D"><span class="s4">More…</span></a> </span></p>
<p class="p1"><span class="s1"> </span></p>
<p class="p6"><span class="s5"><a href="file:///Users/rogerb/Documents/GitHub/mullins-site/templates/%7B%7Bitems.link%7D%7D">More publications…</a></span></p>
<p class="p1"><span class="s1"></span></p>
<p class="p1"><span class="s1">
</section>
</div>
</body>
<!-- Mirrored from mullinslab.microbiol.washington.edu/ by HTTrack Website Copier/3.x [XR&CO'2014], Mon, 21 Jul 2025 17:59:55 GMT -->
</html>