From d745ed1ed1943fb6b21eea171cbfd4fd7c6cd5aa Mon Sep 17 00:00:00 2001
From: woook <jwa21@cam.ac.uk>
Date: Wed, 15 Apr 2026 07:18:55 +0100
Subject: [PATCH] chore: ignore venv, EDA artefacts, and session notes
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Add .venv/, analysis scripts, notebooks, and session markdown files
to .gitignore — these are downstream use artefacts not part of the
normalisation pipeline itself.
---
 .gitignore | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/.gitignore b/.gitignore
index 4a087ea..2a7d4fa 100644
--- a/.gitignore
+++ b/.gitignore
@@ -19,3 +19,12 @@ integration_report.md
 
 # OS
 .DS_Store
+
+# Virtual environments
+.venv/
+
+# EDA / analysis artefacts (downstream use, not part of pipeline)
+eda_haemonc_v3_norm.py
+haemonc_v3_norm_eda.ipynb
+haemonc_v3_norm_eda.html
+vcf_normalisation_session_*.md