From 39ada7fb6939bf5849799c2349cb2e92c8b1df1c Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Fri, 11 Feb 2022 01:35:18 +0100
Subject: [PATCH 1/8] Move patches in the mg5 scope

---
 .../mg5/patches}/change_etaj_to_rapj.patch       | 16 ++++++++--------
 .../patches}/no_pole_cancellation_checks.patch   |  0
 .../external/mg5/patches}/set_tau_min.patch      |  2 +-
 3 files changed, 9 insertions(+), 9 deletions(-)
 rename {patches => runcardsrunner/external/mg5/patches}/change_etaj_to_rapj.patch (95%)
 rename {patches => runcardsrunner/external/mg5/patches}/no_pole_cancellation_checks.patch (100%)
 rename {patches => runcardsrunner/external/mg5/patches}/set_tau_min.patch (99%)

diff --git a/patches/change_etaj_to_rapj.patch b/runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch
similarity index 95%
rename from patches/change_etaj_to_rapj.patch
rename to runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch
index f7bdc5d4..73f9df42 100644
--- a/patches/change_etaj_to_rapj.patch
+++ b/runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch
@@ -2,16 +2,16 @@
 +++ NLO/SubProcesses/fastjetfortran_madfks_core.cc	2020-11-27 18:13:47.285826142 +0100
 @@ -76,7 +76,7 @@
    /// and the extraction of the jets
-   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart, 
+   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart,
                                   const JetDefinition & jet_def,
 -                                 const double & ptmin, const double & etamax,
 +                                 const double & ptmin, const double & rapmax,
  				 double * f77jets, int & njets, int * whichjet) {
- 
+
      // transfer p[4*ipart+0..3] -> input_particles[i]
 @@ -90,9 +90,9 @@
      jets = sorted_by_pt(cs->inclusive_jets(ptmin));
- 
+
      //apply the eta selector if etamax >0
 -    Selector select_eta = SelectorAbsEtaMax(etamax);
 -    if (etamax > 0.) {
@@ -20,22 +20,22 @@
 +    if (rapmax > 0.) {
 +        jets = select_rap(jets);
      }
- 
+
      // transfer jets -> f77jets[4*ijet+0..3]
 --- NLO/SubProcesses/fastjetfortran_madfks_full.cc.orig	2020-11-27 18:11:12.687075955 +0100
 +++ NLO/SubProcesses/fastjetfortran_madfks_full.cc	2020-11-27 18:13:47.289826110 +0100
 @@ -79,7 +79,7 @@
    /// and the extraction of the jets
-   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart, 
+   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart,
                                   const JetDefinition & jet_def,
 -                                 const double & ptmin, const double & etamax,
 +                                 const double & ptmin, const double & rapmax,
  				 double * f77jets, int & njets, int * whichjet,
- 				 const double & ghost_maxrap = 0.0,  
+ 				 const double & ghost_maxrap = 0.0,
  				 const int & nrepeat = 0, const double & ghost_area = 0.0) {
 @@ -101,9 +101,9 @@
      jets = sorted_by_pt(cs->inclusive_jets(ptmin));
- 
+
      //apply the eta selector if etamax >0
 -    Selector select_eta = SelectorAbsEtaMax(etamax);
 -    if (etamax > 0.) {
@@ -44,5 +44,5 @@
 +    if (rapmax > 0.) {
 +        jets = select_rap(jets);
      }
- 
+
      // transfer jets -> f77jets[4*ijet+0..3]
diff --git a/patches/no_pole_cancellation_checks.patch b/runcardsrunner/external/mg5/patches/no_pole_cancellation_checks.patch
similarity index 100%
rename from patches/no_pole_cancellation_checks.patch
rename to runcardsrunner/external/mg5/patches/no_pole_cancellation_checks.patch
diff --git a/patches/set_tau_min.patch b/runcardsrunner/external/mg5/patches/set_tau_min.patch
similarity index 99%
rename from patches/set_tau_min.patch
rename to runcardsrunner/external/mg5/patches/set_tau_min.patch
index 17b8eddb..c3455dd9 100644
--- a/patches/set_tau_min.patch
+++ b/runcardsrunner/external/mg5/patches/set_tau_min.patch
@@ -146,7 +146,7 @@
 -                     else
 -                        smin_update = dsqrt(smin_update)/nb_iden_pdg ! share over N particle, and change dimension
 -                     endif
--                     ! update in sqrt(s) so take the 
+-                     ! update in sqrt(s) so take the
 -                     if  (j_fks.gt.nincoming) then
 -                        taumin(iFKS,ichan)=taumin(iFKS,ichan) + smin_update
 -                     else

From 8e1f6d990b67ec7f4cd70d17bf4286e38f81ca6e Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Fri, 11 Feb 2022 01:55:15 +0100
Subject: [PATCH 2/8] Update mg5 specific paths

---
 runcardsrunner/cli/list.py              |  8 ++++----
 runcardsrunner/external/mg5/__init__.py | 20 ++++++++++++--------
 runcardsrunner/external/mg5/paths.py    |  7 +++++++
 runcardsrunner/paths.py                 | 23 +++++++++++++----------
 4 files changed, 36 insertions(+), 22 deletions(-)
 create mode 100644 runcardsrunner/external/mg5/paths.py

diff --git a/runcardsrunner/cli/list.py b/runcardsrunner/cli/list.py
index 6000d6d0..af036b46 100644
--- a/runcardsrunner/cli/list.py
+++ b/runcardsrunner/cli/list.py
@@ -1,8 +1,8 @@
-import click
 import rich
 import rich.markdown
 
-from .. import paths, tools
+from .. import paths
+from ..external.mg5 import paths as mg5_paths
 from ._base import command
 
 
@@ -31,13 +31,13 @@ def mg5():
 @mg5.command()
 def patches():
     """List available patches."""
-    main(paths.patches, files=True)
+    main(mg5_paths.patches, files=True)
 
 
 @mg5.command()
 def cuts():
     """List available cuts."""
-    main(paths.cuts_code, files=True)
+    main(mg5_paths.cuts_code, files=True)
 
 
 def main(path, files=False, prefix=""):
diff --git a/runcardsrunner/external/mg5/__init__.py b/runcardsrunner/external/mg5/__init__.py
index 354ad09f..ac8bf1db 100644
--- a/runcardsrunner/external/mg5/__init__.py
+++ b/runcardsrunner/external/mg5/__init__.py
@@ -9,6 +9,7 @@
 
 from ... import install, log, paths, tools
 from .. import interface
+from . import paths as mg5_paths
 
 
 class Mg5(interface.External):
@@ -67,9 +68,10 @@ def run(self):
         # copy the launch file to the directory and replace the variables
         launch = (self.source / "launch.txt").read_text().replace("@OUTPUT@", self.name)
 
-        # TODO: write a list with variables that should be replaced in the launch file; for the time
-        # being we create the file here, but in the future it should be read from the theory database
-        # EDIT: now available in self.theory
+        # TODO: write a list with variables that should be replaced in the
+        # launch file; for the time being we create the file here, but in the
+        # future it should be read from the theory database EDIT: now available
+        # in self.theory
         variables = json.loads((paths.pkg / "variables.json").read_text())
         variables["LHAPDF_ID"] = self.pdf_id
 
@@ -106,7 +108,7 @@ def run(self):
 
         if user_taumin is not None:
             set_tau_min_patch = (
-                (paths.patches / "set_tau_min.patch")
+                (mg5_paths.patches / "set_tau_min.patch")
                 .read_text()
                 .replace("@TAU_MIN@", f"{user_taumin}d0")
             )
@@ -124,7 +126,7 @@ def run(self):
 
         if len(enable_patches_list) != 0:
             for patch in enable_patches_list:
-                patch_file = paths.patches / patch
+                patch_file = mg5_paths.patches / patch
                 patch_file = patch_file.with_suffix(patch_file.suffix + ".patch")
                 if not patch_file.exists():
                     raise ValueError(
@@ -186,7 +188,9 @@ def results(self):
         table = filter(
             lambda line: re.match("^  [+-]", line) is not None, madatnlo.splitlines()
         )
-        df = pd.DataFrame(np.array([[float(x) for x in l.split()] for l in table]))
+        df = pd.DataFrame(
+            np.array([[float(x) for x in line.split()] for line in table])
+        )
         # start column from 1
         df.columns += 1
         df["result"] = df[3]
@@ -239,7 +243,7 @@ def apply_user_cuts(cuts_file, user_cuts):
     marker_pos = find_marker_position("logical function passcuts_user", contents)
     marker_pos = marker_pos + 8
 
-    for fname in paths.cuts_variables.iterdir():
+    for fname in mg5_paths.cuts_variables.iterdir():
         name = fname.stem
         if any(i[0].startswith(name) for i in user_cuts):
             contents.insert(marker_pos, fname.read_text())
@@ -264,7 +268,7 @@ def apply_user_cuts(cuts_file, user_cuts):
 
             value = value + "d0"
 
-        code = (paths.cuts_code / f"{name}.f").read_text().format(value)
+        code = (mg5_paths.cuts_code / f"{name}.f").read_text().format(value)
         contents.insert(marker_pos, code)
 
     with open(cuts_file, "w") as fd:
diff --git a/runcardsrunner/external/mg5/paths.py b/runcardsrunner/external/mg5/paths.py
new file mode 100644
index 00000000..f3f98629
--- /dev/null
+++ b/runcardsrunner/external/mg5/paths.py
@@ -0,0 +1,7 @@
+import pathlib
+
+subpkg = pathlib.Path(__file__).absolute().parent
+
+cuts_code = subpkg / "cuts_code"
+cuts_variables = subpkg / "cuts_variables"
+patches = subpkg / "patches"
diff --git a/runcardsrunner/paths.py b/runcardsrunner/paths.py
index c08e7b69..7e617ced 100644
--- a/runcardsrunner/paths.py
+++ b/runcardsrunner/paths.py
@@ -1,20 +1,16 @@
 import pathlib
 import shutil
-
-import lhapdf
+import tempfile
 
 pkg = pathlib.Path(__file__).absolute().parent
 root = pkg.parent
 
 # internal
-cuts_code = pkg / "external" / "mg5" / "cuts_code"
-cuts_variables = pkg / "external" / "mg5" / "cuts_variables"
 lhapdf_conf = pkg / "confs" / "lhapdf.conf"
 
 # external
 runcards = root / "nnpdf31_proc"
 theories = root / "theories"
-patches = root / "patches"
 
 # prefix  and locally installed
 prefix = root / ".prefix"
@@ -25,10 +21,17 @@
 pineappl = prefix / "pineappl"
 cargo = prefix / "cargo"
 lhapdf_dir = prefix / "lhapdf"
-pineappl_exe = lambda: pathlib.Path(shutil.which("pineappl"))
-
-# tmp
-rust_init = pathlib.Path("/tmp/rustup-init")
-
 # lhapdf data
 lhapdf_data_alternative = prefix / "share" / "LHAPDF"
+
+
+def pineappl_exe():
+    p = shutil.which("pineappl")
+    if p is not None:
+        return pathlib.Path()
+    else:
+        raise OSError("pineappl installation not found.")
+
+
+# tmp
+rust_init = tempfile.mktemp()

From 2c34644acb35cbce8ff613e7bc3f04ac4f8bac57 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Fri, 11 Feb 2022 10:41:58 +0100
Subject: [PATCH 3/8] Update pineappl github url, to skip auth

---
 runcardsrunner/install.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/runcardsrunner/install.py b/runcardsrunner/install.py
index b33d377c..b6770c3c 100644
--- a/runcardsrunner/install.py
+++ b/runcardsrunner/install.py
@@ -25,7 +25,7 @@
 """
 "instructions to set the correct model for MG5aMC\\@NLO"
 
-pineappl_repo = "https://github.com/N3PDF/pineappl.git"
+pineappl_repo = "git://github.com/N3PDF/pineappl.git"
 "git repo location for pineappl"
 
 

From 24548562ed6dc653b69c60624494bca06b90d11e Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Fri, 11 Feb 2022 11:39:19 +0100
Subject: [PATCH 4/8] Update yadism version

---
 poetry.lock    | 740 ++++++++++++++++++++++++-------------------------
 pyproject.toml |  18 +-
 2 files changed, 370 insertions(+), 388 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 73d020f3..0469d700 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -24,11 +24,11 @@ python-versions = "*"
 
 [[package]]
 name = "astroid"
-version = "2.9.0"
+version = "2.9.3"
 description = "An abstract syntax tree for Python with inference support."
 category = "dev"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.6.2"
 
 [package.dependencies]
 lazy-object-proxy = ">=1.4.0"
@@ -45,17 +45,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "attrs"
-version = "21.2.0"
+version = "21.4.0"
 description = "Classes Without Boilerplate"
 category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
 docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
 
 [[package]]
 name = "babel"
@@ -78,7 +78,7 @@ python-versions = "*"
 
 [[package]]
 name = "black"
-version = "21.11b1"
+version = "21.12b0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
@@ -89,9 +89,11 @@ click = ">=7.1.2"
 mypy-extensions = ">=0.4.3"
 pathspec = ">=0.9.0,<1"
 platformdirs = ">=2"
-regex = ">=2021.4.4"
 tomli = ">=0.2.6,<2.0.0"
-typing-extensions = ">=3.10.0.0"
+typing-extensions = [
+    {version = ">=3.10.0.0", markers = "python_version < \"3.10\""},
+    {version = "!=3.10.0.1", markers = "python_version >= \"3.10\""},
+]
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
@@ -142,7 +144,7 @@ pycparser = "*"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.8"
+version = "2.0.11"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
@@ -194,7 +196,7 @@ six = "*"
 
 [[package]]
 name = "decorator"
-version = "5.1.0"
+version = "5.1.1"
 description = "Decorators for Humans"
 category = "dev"
 optional = false
@@ -210,7 +212,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "dulwich"
-version = "0.20.26"
+version = "0.20.32"
 description = "Python Git Library"
 category = "main"
 optional = false
@@ -228,7 +230,7 @@ watch = ["pyinotify"]
 
 [[package]]
 name = "eko"
-version = "0.7.3"
+version = "0.8.2"
 description = "Evolution Kernel Operator"
 category = "main"
 optional = false
@@ -269,9 +271,25 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
+[[package]]
+name = "importlib-metadata"
+version = "4.11.0"
+description = "Read metadata from Python packages"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+zipp = ">=0.5"
+
+[package.extras]
+docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+perf = ["ipython"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
+
 [[package]]
 name = "ipython"
-version = "7.29.0"
+version = "7.31.1"
 description = "IPython: Productive Interactive Computing"
 category = "dev"
 optional = false
@@ -357,15 +375,15 @@ six = ">=1.4.1"
 
 [[package]]
 name = "lazy-object-proxy"
-version = "1.6.0"
+version = "1.7.1"
 description = "A fast and thorough lazy object proxy."
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "leprohq"
-version = "0.2.0"
+version = "0.2.2"
 description = "(Un-)polarized Leptoproduction of Heavy Quarks"
 category = "main"
 optional = false
@@ -391,11 +409,11 @@ tqdm = "*"
 
 [[package]]
 name = "llvmlite"
-version = "0.36.0"
+version = "0.38.0"
 description = "lightweight wrapper around basic LLVM functionality"
 category = "main"
 optional = false
-python-versions = ">=3.6,<3.10"
+python-versions = ">=3.7,<3.11"
 
 [[package]]
 name = "lz4"
@@ -455,19 +473,19 @@ python-versions = "*"
 
 [[package]]
 name = "numba"
-version = "0.53.1"
+version = "0.55.1"
 description = "compiling Python code using LLVM"
 category = "main"
 optional = false
-python-versions = ">=3.6,<3.10"
+python-versions = ">=3.7,<3.11"
 
 [package.dependencies]
-llvmlite = ">=0.36.0rc1,<0.37"
-numpy = ">=1.15"
+llvmlite = ">=0.38.0rc1,<0.39"
+numpy = ">=1.18,<1.22"
 
 [[package]]
 name = "numpy"
-version = "1.21.4"
+version = "1.21.5"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
@@ -486,27 +504,28 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pandas"
-version = "1.3.4"
+version = "1.4.0"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
-python-versions = ">=3.7.1"
+python-versions = ">=3.8"
 
 [package.dependencies]
 numpy = [
-    {version = ">=1.17.3", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
+    {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
     {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""},
     {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""},
+    {version = ">=1.21.0", markers = "python_version >= \"3.10\""},
 ]
-python-dateutil = ">=2.7.3"
-pytz = ">=2017.3"
+python-dateutil = ">=2.8.1"
+pytz = ">=2020.1"
 
 [package.extras]
-test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"]
+test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
 
 [[package]]
 name = "parso"
-version = "0.8.2"
+version = "0.8.3"
 description = "A Python Parser"
 category = "dev"
 optional = false
@@ -570,7 +589,7 @@ python-versions = "*"
 
 [[package]]
 name = "pineappl"
-version = "0.5.0_beta.4"
+version = "0.5.0_beta.5"
 description = "Python bindings to PineAPPL"
 category = "main"
 optional = false
@@ -589,11 +608,11 @@ python-versions = ">=3.3,<4.0"
 
 [[package]]
 name = "platformdirs"
-version = "2.4.0"
+version = "2.5.0"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
@@ -612,7 +631,7 @@ dev = ["pre-commit", "tox"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.22"
+version = "3.0.28"
 description = "Library for building powerful interactive command lines in Python"
 category = "dev"
 optional = false
@@ -675,7 +694,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pygit2"
-version = "1.7.1"
+version = "1.8.0"
 description = "Python bindings for libgit2."
 category = "main"
 optional = false
@@ -686,7 +705,7 @@ cffi = ">=1.4.0"
 
 [[package]]
 name = "pygments"
-version = "2.10.0"
+version = "2.11.2"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "main"
 optional = false
@@ -694,7 +713,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "pylint"
-version = "2.12.1"
+version = "2.12.2"
 description = "python code static checker"
 category = "dev"
 optional = false
@@ -711,7 +730,7 @@ typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""
 
 [[package]]
 name = "pyparsing"
-version = "3.0.6"
+version = "3.0.7"
 description = "Python parsing module"
 category = "main"
 optional = false
@@ -785,17 +804,9 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 
-[[package]]
-name = "regex"
-version = "2021.11.10"
-description = "Alternative regular expression module, to replace re."
-category = "dev"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "requests"
-version = "2.26.0"
+version = "2.27.1"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
@@ -813,7 +824,7 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
 
 [[package]]
 name = "rich"
-version = "10.14.0"
+version = "10.16.2"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "main"
 optional = false
@@ -829,14 +840,14 @@ jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"]
 
 [[package]]
 name = "scipy"
-version = "1.7.3"
+version = "1.8.0"
 description = "SciPy: Scientific Library for Python"
 category = "main"
 optional = false
-python-versions = ">=3.7,<3.11"
+python-versions = ">=3.8,<3.11"
 
 [package.dependencies]
-numpy = ">=1.16.5,<1.23.0"
+numpy = ">=1.17.3,<1.25.0"
 
 [[package]]
 name = "six"
@@ -856,7 +867,7 @@ python-versions = "*"
 
 [[package]]
 name = "sphinx"
-version = "4.3.0"
+version = "4.4.0"
 description = "Python documentation generator"
 category = "main"
 optional = false
@@ -868,6 +879,7 @@ babel = ">=1.3"
 colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""}
 docutils = ">=0.14,<0.18"
 imagesize = "*"
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 Jinja2 = ">=2.3"
 packaging = "*"
 Pygments = ">=2.0"
@@ -882,7 +894,7 @@ sphinxcontrib-serializinghtml = ">=1.1.5"
 
 [package.extras]
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-lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.900)", "docutils-stubs", "types-typed-ast", "types-pkg-resources", "types-requests"]
+lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"]
 test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
 
 [[package]]
@@ -995,7 +1007,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
 [[package]]
 name = "tomli"
-version = "1.2.2"
+version = "1.2.3"
 description = "A lil' TOML parser"
 category = "dev"
 optional = false
@@ -1030,7 +1042,7 @@ test = ["pytest"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.0.0"
+version = "4.0.1"
 description = "Backported and Experimental Type Hints for Python 3.6+"
 category = "dev"
 optional = false
@@ -1038,7 +1050,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "urllib3"
-version = "1.26.7"
+version = "1.26.8"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
@@ -1075,16 +1087,16 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "yadism"
-version = "0.9.2"
+version = "0.10.4"
 description = "Yet Another Deep-Inelastic Scattering Module"
 category = "main"
 optional = false
-python-versions = ">=3.8,<3.10"
+python-versions = ">=3.8,<3.11"
 
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+eko = ">=0.8.2,<0.9.0"
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 numpy = ">=1.21.0,<2.0.0"
 pandas = ">=1.3.0,<2.0.0"
 rich = ">=10.6.0,<11.0.0"
@@ -1092,15 +1104,28 @@ scipy = ">=1.7.0,<2.0.0"
 
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+pineappl = ["pineappl (==0.5.0_beta.6)"]
+
+[[package]]
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+version = "3.7.0"
+description = "Backport of pathlib-compatible object wrapper for zip files"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
 
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+    {file = "scipy-1.8.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a279e27c7f4566ef18bab1b1e2c37d168e365080974758d107e7d237d3f0f484"},
+    {file = "scipy-1.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ad5be4039147c808e64f99c0e8a9641eb5d2fa079ff5894dcd8240e94e347af4"},
+    {file = "scipy-1.8.0-cp38-cp38-win32.whl", hash = "sha256:3d9dd6c8b93a22bf9a3a52d1327aca7e092b1299fb3afc4f89e8eba381be7b59"},
+    {file = "scipy-1.8.0-cp38-cp38-win_amd64.whl", hash = "sha256:5e73343c5e0d413c1f937302b2e04fb07872f5843041bcfd50699aef6e95e399"},
+    {file = "scipy-1.8.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:de2e80ee1d925984c2504812a310841c241791c5279352be4707cdcd7c255039"},
+    {file = "scipy-1.8.0-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:c2bae431d127bf0b1da81fc24e4bba0a84d058e3a96b9dd6475dfcb3c5e8761e"},
+    {file = "scipy-1.8.0-cp39-cp39-macosx_12_0_universal2.macosx_10_9_x86_64.whl", hash = "sha256:723b9f878095ed994756fa4ee3060c450e2db0139c5ba248ee3f9628bd64e735"},
+    {file = "scipy-1.8.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:011d4386b53b933142f58a652aa0f149c9b9242abd4f900b9f4ea5fbafc86b89"},
+    {file = "scipy-1.8.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e6f0cd9c0bd374ef834ee1e0f0999678d49dcc400ea6209113d81528958f97c7"},
+    {file = "scipy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f3720d0124aced49f6f2198a6900304411dbbeed12f56951d7c66ebef05e3df6"},
+    {file = "scipy-1.8.0-cp39-cp39-win32.whl", hash = "sha256:3d573228c10a3a8c32b9037be982e6440e411b443a6267b067cac72f690b8d56"},
+    {file = "scipy-1.8.0-cp39-cp39-win_amd64.whl", hash = "sha256:bb7088e89cd751acf66195d2f00cf009a1ea113f3019664032d9075b1e727b6c"},
+    {file = "scipy-1.8.0.tar.gz", hash = "sha256:31d4f2d6b724bc9a98e527b5849b8a7e589bf1ea630c33aa563eda912c9ff0bd"},
 ]
 six = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
@@ -1805,8 +1787,8 @@ snowballstemmer = [
     {file = "snowballstemmer-2.2.0.tar.gz", hash = "sha256:09b16deb8547d3412ad7b590689584cd0fe25ec8db3be37788be3810cbf19cb1"},
 ]
 sphinx = [
-    {file = "Sphinx-4.3.0-py3-none-any.whl", hash = "sha256:7e2b30da5f39170efcd95c6270f07669d623c276521fee27ad6c380f49d2bf5b"},
-    {file = "Sphinx-4.3.0.tar.gz", hash = "sha256:6d051ab6e0d06cba786c4656b0fe67ba259fe058410f49e95bee6e49c4052cbf"},
+    {file = "Sphinx-4.4.0-py3-none-any.whl", hash = "sha256:5da895959511473857b6d0200f56865ed62c31e8f82dd338063b84ec022701fe"},
+    {file = "Sphinx-4.4.0.tar.gz", hash = "sha256:6caad9786055cb1fa22b4a365c1775816b876f91966481765d7d50e9f0dd35cc"},
 ]
 sphinx-rtd-theme = [
     {file = "sphinx_rtd_theme-1.0.0-py2.py3-none-any.whl", hash = "sha256:4d35a56f4508cfee4c4fb604373ede6feae2a306731d533f409ef5c3496fdbd8"},
@@ -1845,8 +1827,8 @@ toml = [
     {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"},
 ]
 tomli = [
-    {file = "tomli-1.2.2-py3-none-any.whl", hash = "sha256:f04066f68f5554911363063a30b108d2b5a5b1a010aa8b6132af78489fe3aade"},
-    {file = "tomli-1.2.2.tar.gz", hash = "sha256:c6ce0015eb38820eaf32b5db832dbc26deb3dd427bd5f6556cf0acac2c214fee"},
+    {file = "tomli-1.2.3-py3-none-any.whl", hash = "sha256:e3069e4be3ead9668e21cb9b074cd948f7b3113fd9c8bba083f48247aab8b11c"},
+    {file = "tomli-1.2.3.tar.gz", hash = "sha256:05b6166bff487dc068d322585c7ea4ef78deed501cc124060e0f238e89a9231f"},
 ]
 tqdm = [
     {file = "tqdm-4.62.3-py2.py3-none-any.whl", hash = "sha256:8dd278a422499cd6b727e6ae4061c40b48fce8b76d1ccbf5d34fca9b7f925b0c"},
@@ -1857,12 +1839,12 @@ traitlets = [
     {file = "traitlets-5.1.1.tar.gz", hash = "sha256:059f456c5a7c1c82b98c2e8c799f39c9b8128f6d0d46941ee118daace9eb70c7"},
 ]
 typing-extensions = [
-    {file = "typing_extensions-4.0.0-py3-none-any.whl", hash = "sha256:829704698b22e13ec9eaf959122315eabb370b0884400e9818334d8b677023d9"},
-    {file = "typing_extensions-4.0.0.tar.gz", hash = "sha256:2cdf80e4e04866a9b3689a51869016d36db0814d84b8d8a568d22781d45d27ed"},
+    {file = "typing_extensions-4.0.1-py3-none-any.whl", hash = "sha256:7f001e5ac290a0c0401508864c7ec868be4e701886d5b573a9528ed3973d9d3b"},
+    {file = "typing_extensions-4.0.1.tar.gz", hash = "sha256:4ca091dea149f945ec56afb48dae714f21e8692ef22a395223bcd328961b6a0e"},
 ]
 urllib3 = [
-    {file = "urllib3-1.26.7-py2.py3-none-any.whl", hash = "sha256:c4fdf4019605b6e5423637e01bc9fe4daef873709a7973e195ceba0a62bbc844"},
-    {file = "urllib3-1.26.7.tar.gz", hash = "sha256:4987c65554f7a2dbf30c18fd48778ef124af6fab771a377103da0585e2336ece"},
+    {file = "urllib3-1.26.8-py2.py3-none-any.whl", hash = "sha256:000ca7f471a233c2251c6c7023ee85305721bfdf18621ebff4fd17a8653427ed"},
+    {file = "urllib3-1.26.8.tar.gz", hash = "sha256:0e7c33d9a63e7ddfcb86780aac87befc2fbddf46c58dbb487e0855f7ceec283c"},
 ]
 wcwidth = [
     {file = "wcwidth-0.2.5-py2.py3-none-any.whl", hash = "sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784"},
@@ -1925,6 +1907,10 @@ wrapt = [
     {file = "wrapt-1.13.3.tar.gz", hash = "sha256:1fea9cd438686e6682271d36f3481a9f3636195578bab9ca3382e2f5f01fc185"},
 ]
 yadism = [
-    {file = "yadism-0.9.2-py3-none-any.whl", hash = "sha256:0d8276c62879d14e533baf81eacf02d30d70c589cf12e3440de3d4eef94184d0"},
-    {file = "yadism-0.9.2.tar.gz", hash = "sha256:f38887bd34009c24ba0a99e2f11df170d8c9bf4b09ba1c0870f4a1d4aa44a227"},
+    {file = "yadism-0.10.4-py3-none-any.whl", hash = "sha256:d779be314d4dc529d3c3e890c756fc41fc7ce06c414e17dee5e7df478baf660d"},
+    {file = "yadism-0.10.4.tar.gz", hash = "sha256:ccd4cf5ef69e073edb73111d4194d7d9d4baabfa3e13d809fa0d385b4ce5becd"},
+]
+zipp = [
+    {file = "zipp-3.7.0-py3-none-any.whl", hash = "sha256:b47250dd24f92b7dd6a0a8fc5244da14608f3ca90a5efcd37a3b1642fac9a375"},
+    {file = "zipp-3.7.0.tar.gz", hash = "sha256:9f50f446828eb9d45b267433fd3e9da8d801f614129124863f9c51ebceafb87d"},
 ]
diff --git a/pyproject.toml b/pyproject.toml
index 4f2be558..be18ed1b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,11 +5,11 @@ description = "Generate runcards for producing PineAPPL grids."
 authors = ["Alessandro Candido <candido.ale@gmail.com>"]
 
 [tool.poetry.dependencies]
-python = ">=3.8,<3.10"
+python = ">=3.8,<3.11"
 click = "^8.0.1"
 rich = "^10.6.0"
 PyYAML = "^5.4.1"
-yadism = "^0.9.0"
+yadism = "^0.10.4"
 pandas = "^1.3.0"
 lz4 = "^3.1.3"
 breezy = "^3.2.1"
@@ -18,11 +18,11 @@ pygit2 = "^1.6.1"
 requests = "^2.26.0"
 a3b2bbc3ced97675ac3a71df45f55ba = "^6.4.0"
 lhapdf-management = "^0.2"
-pineappl = {version = "0.5.0_beta.4", allow-prereleases = true}
+pineappl = { version = "0.5.0_beta.5", allow-prereleases = true }
 # docs dependencies (for readthedocs)
-Sphinx = { version ="^4.2.0", optional = true }
-sphinx-rtd-theme = { version ="^1.0.0", optional = true }
-sphinxcontrib-bibtex = { version =  "^2.4.1", optional = true }
+Sphinx = { version = "^4.2.0", optional = true }
+sphinx-rtd-theme = { version = "^1.0.0", optional = true }
+sphinxcontrib-bibtex = { version = "^2.4.1", optional = true }
 more-itertools = "^8.10.0"
 
 
@@ -38,11 +38,7 @@ sphinxcontrib-bibtex = "^2.4.1"
 pylint = "^2.11.1"
 
 [tool.poetry.extras]
-docs = [
-  "sphinx",
-  "sphinx-rtd-theme",
-  "sphinxcontrib-bibtex"
-]
+docs = ["sphinx", "sphinx-rtd-theme", "sphinxcontrib-bibtex"]
 
 [tool.poetry.scripts]
 rr = "runcardsrunner:command"

From 65f9f6f652cf04884b801c1f50ce2efc15a86f38 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Mon, 14 Feb 2022 14:52:59 +0100
Subject: [PATCH 5/8] Update pineappl to v0.5

---
 poetry.lock    | 90 +++++++++++++++++++++++++-------------------------
 pyproject.toml |  2 +-
 2 files changed, 46 insertions(+), 46 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 0469d700..ff4823bd 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -144,7 +144,7 @@ pycparser = "*"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.11"
+version = "2.0.12"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
@@ -504,7 +504,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pandas"
-version = "1.4.0"
+version = "1.4.1"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
@@ -589,14 +589,14 @@ python-versions = "*"
 
 [[package]]
 name = "pineappl"
-version = "0.5.0_beta.5"
+version = "0.5.0"
 description = "Python bindings to PineAPPL"
 category = "main"
 optional = false
 python-versions = "*"
 
 [package.dependencies]
-numpy = ">=1.21.0,<1.22.0"
+numpy = ">=1.16.0,<2.0.0"
 
 [[package]]
 name = "pkgconfig"
@@ -1042,7 +1042,7 @@ test = ["pytest"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.0.1"
+version = "4.1.1"
 description = "Backported and Experimental Type Hints for Python 3.6+"
 category = "dev"
 optional = false
@@ -1125,7 +1125,7 @@ docs = ["Sphinx", "sphinx-rtd-theme", "sphinxcontrib-bibtex"]
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.8,<3.11"
-content-hash = "f436b334d925db840e6632046d3bd54eddbd530fbd04881a4bb710f4135cd4a0"
+content-hash = "0d4b13bcd8c95dda85fc7c4f78766d636b50eb01a851e0c2c82cbc6f5ea6776f"
 
 [metadata.files]
 a3b2bbc3ced97675ac3a71df45f55ba = [
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 ]
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@@ -1549,27 +1549,27 @@ packaging = [
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 ]
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+    {file = "pandas-1.4.1-cp38-cp38-win_amd64.whl", hash = "sha256:1b384516dbb4e6aae30e3464c2e77c563da5980440fbdfbd0968e3942f8f9d70"},
+    {file = "pandas-1.4.1-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:f02e85e6d832be37d7f16cf6ac8bb26b519ace3e5f3235564a91c7f658ab2a43"},
+    {file = "pandas-1.4.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:0b1a13f647e4209ed7dbb5da3497891d0045da9785327530ab696417ef478f84"},
+    {file = "pandas-1.4.1-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:19f7c632436b1b4f84615c3b127bbd7bc603db95e3d4332ed259dc815c9aaa26"},
+    {file = "pandas-1.4.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7ea47ba1d6f359680130bd29af497333be6110de8f4c35b9211eec5a5a9630fa"},
+    {file = "pandas-1.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2e5a7a1e0ecaac652326af627a3eca84886da9e667d68286866d4e33f6547caf"},
+    {file = "pandas-1.4.1-cp39-cp39-win32.whl", hash = "sha256:1d85d5f6be66dfd6d1d8d13b9535e342a2214260f1852654b19fa4d7b8d1218b"},
+    {file = "pandas-1.4.1-cp39-cp39-win_amd64.whl", hash = "sha256:3129a35d9dad1d80c234dd78f8f03141b914395d23f97cf92a366dcd19f8f8bf"},
+    {file = "pandas-1.4.1.tar.gz", hash = "sha256:8db93ec98ac7cb5f8ac1420c10f5e3c43533153f253fe7fb6d891cf5aa2b80d2"},
 ]
 parso = [
     {file = "parso-0.8.3-py2.py3-none-any.whl", hash = "sha256:c001d4636cd3aecdaf33cbb40aebb59b094be2a74c556778ef5576c175e19e75"},
@@ -1599,20 +1599,20 @@ pickleshare = [
     {file = "pickleshare-0.7.5.tar.gz", hash = "sha256:87683d47965c1da65cdacaf31c8441d12b8044cdec9aca500cd78fc2c683afca"},
 ]
 pineappl = [
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-    {file = "pineappl-0.5.0_beta.5-cp310-none-win_amd64.whl", hash = "sha256:45d348454f917d4dbc577057cb1e5e60b5529f5e1dd7c6a360cbc08c5ee12eca"},
-    {file = "pineappl-0.5.0_beta.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ca1061e8d255571a9c94beb07193077163b1e4e5ca1a3a96e8ba4e35f7d08da5"},
-    {file = "pineappl-0.5.0_beta.5-cp36-none-win_amd64.whl", hash = "sha256:9f323e972a8ad120c44a0a06dba86ab878d31c99b9ac7cb620fb6005f5e63372"},
-    {file = "pineappl-0.5.0_beta.5-cp37-cp37m-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:fad57fa2dfe81f340889ec99b7e3d515545c72a5bd43af0c04973c877c636b70"},
-    {file = "pineappl-0.5.0_beta.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:adaa38a80450bdac5f0d4dc3fe97a57b51eeb0f8361cdab72f9902f06bdacb5a"},
-    {file = "pineappl-0.5.0_beta.5-cp37-none-win_amd64.whl", hash = "sha256:d8201366c79b39c1d59c491e90f0bcfd203ca4bb1cbf8dd1624cd314b9caa3b9"},
-    {file = "pineappl-0.5.0_beta.5-cp38-cp38-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:14495509b74dd980ea7f7e35fa358c83c0e2501bb169f7912400315b11f1b2b4"},
-    {file = "pineappl-0.5.0_beta.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ff627121ce4752c7b4f4c59496aee2c045c2e9749130e2b546fb9560c670132a"},
-    {file = "pineappl-0.5.0_beta.5-cp38-none-win_amd64.whl", hash = "sha256:9509a2db330f237a7ed46e06dfc0ab2ac3ce9930e9b8f4ba9d8fa89c36b4db71"},
-    {file = "pineappl-0.5.0_beta.5-cp39-cp39-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:9614fd199eb28cafa3fd3800211c59ffc541561146ad7d83118c01753fcb5e39"},
-    {file = "pineappl-0.5.0_beta.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2c8045b81f64a32ad1e53f7fe6702c000f2a3d1a97500d9731fbde6575d1bf54"},
-    {file = "pineappl-0.5.0_beta.5-cp39-none-win_amd64.whl", hash = "sha256:96025cab5f4ea797536e1d9bf5cb0de1cdc0a7be5f1ce2014fe4b273c47388b4"},
-    {file = "pineappl-0.5.0_beta.5.tar.gz", hash = "sha256:272e1aaae0987526f299cc3e4161f8319f31b63c9c53cdcb27f49c296773dd20"},
+    {file = "pineappl-0.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:01731da882e4624159c51c90c661ecf766eed4bb6fa78bb50ddba15829d66480"},
+    {file = "pineappl-0.5.0-cp310-none-win_amd64.whl", hash = "sha256:6e072e18b1bcb105245ae2fa5d11a24fd00b540f4dc9b9bb6527c3b1c4d8792a"},
+    {file = "pineappl-0.5.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7691b5ccc5953c97062b1693733fbf5976d498b9bf8268b2dc0d35530ef82a62"},
+    {file = "pineappl-0.5.0-cp36-none-win_amd64.whl", hash = "sha256:cedb1cf5af33ec32adf85a52b2815d6174ad03702a0de033f3273e250d8e03cf"},
+    {file = "pineappl-0.5.0-cp37-cp37m-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:3ea10e89f52992f0cf6e4ccb467a316f5e6ef5496aff085608667fab69f28f93"},
+    {file = "pineappl-0.5.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:218881a15b8c6f4cbc84847677004fa620ef7af210c5dddcf06627f4abffbbab"},
+    {file = "pineappl-0.5.0-cp37-none-win_amd64.whl", hash = "sha256:47d968c9d5052cf62e864576081513d1cdc772bb756ac45a3aecb3be78e9c9bf"},
+    {file = "pineappl-0.5.0-cp38-cp38-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:e6c931bc47619069a2029391c44a416d7d95ee340ee33ef8c03097ff422c218b"},
+    {file = "pineappl-0.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fc0c2696f2645f1876fa22b631fabeb10067067e3fc3a3fa1edc9ed9d53bdf50"},
+    {file = "pineappl-0.5.0-cp38-none-win_amd64.whl", hash = "sha256:997822f02c3e2249bbcc215f80004e2c9c841b7879691ba4b20843e357680e87"},
+    {file = "pineappl-0.5.0-cp39-cp39-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:883917faffddd6c077f64baf383682c779f4d3176a26b778a6879c680b16f6ad"},
+    {file = "pineappl-0.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:0a447fb7d84de12af0416c07154fbb4234b5b6a7146f2ee8f54e70ca6c617309"},
+    {file = "pineappl-0.5.0-cp39-none-win_amd64.whl", hash = "sha256:be9cc7c755b710d9113ad7bef13beea59ec32815d7e42b08622418e7cf4e3f5c"},
+    {file = "pineappl-0.5.0.tar.gz", hash = "sha256:742a7f085db2a0c12dbf49750a1f1047e1aff4481627739cf0406b8c630d6fdd"},
 ]
 pkgconfig = [
     {file = "pkgconfig-1.5.5-py3-none-any.whl", hash = "sha256:d20023bbeb42ee6d428a0fac6e0904631f545985a10cdd71a20aa58bc47a4209"},
@@ -1839,8 +1839,8 @@ traitlets = [
     {file = "traitlets-5.1.1.tar.gz", hash = "sha256:059f456c5a7c1c82b98c2e8c799f39c9b8128f6d0d46941ee118daace9eb70c7"},
 ]
 typing-extensions = [
-    {file = "typing_extensions-4.0.1-py3-none-any.whl", hash = "sha256:7f001e5ac290a0c0401508864c7ec868be4e701886d5b573a9528ed3973d9d3b"},
-    {file = "typing_extensions-4.0.1.tar.gz", hash = "sha256:4ca091dea149f945ec56afb48dae714f21e8692ef22a395223bcd328961b6a0e"},
+    {file = "typing_extensions-4.1.1-py3-none-any.whl", hash = "sha256:21c85e0fe4b9a155d0799430b0ad741cdce7e359660ccbd8b530613e8df88ce2"},
+    {file = "typing_extensions-4.1.1.tar.gz", hash = "sha256:1a9462dcc3347a79b1f1c0271fbe79e844580bb598bafa1ed208b94da3cdcd42"},
 ]
 urllib3 = [
     {file = "urllib3-1.26.8-py2.py3-none-any.whl", hash = "sha256:000ca7f471a233c2251c6c7023ee85305721bfdf18621ebff4fd17a8653427ed"},
diff --git a/pyproject.toml b/pyproject.toml
index be18ed1b..6856c40f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,7 +18,7 @@ pygit2 = "^1.6.1"
 requests = "^2.26.0"
 a3b2bbc3ced97675ac3a71df45f55ba = "^6.4.0"
 lhapdf-management = "^0.2"
-pineappl = { version = "0.5.0_beta.5", allow-prereleases = true }
+pineappl = "0.5.0"
 # docs dependencies (for readthedocs)
 Sphinx = { version = "^4.2.0", optional = true }
 sphinx-rtd-theme = { version = "^1.0.0", optional = true }

From 3820275673704a0832049f21aa285444ba8299ba Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 16 Feb 2022 19:30:19 +0100
Subject: [PATCH 6/8] Fix paths modules names

---
 runcardsrunner/cli/list.py              |  7 +++---
 runcardsrunner/external/__init__.py     |  1 +
 runcardsrunner/external/mg5/__init__.py | 29 +++++++++++++++----------
 3 files changed, 21 insertions(+), 16 deletions(-)

diff --git a/runcardsrunner/cli/list.py b/runcardsrunner/cli/list.py
index af036b46..0205c4c9 100644
--- a/runcardsrunner/cli/list.py
+++ b/runcardsrunner/cli/list.py
@@ -1,8 +1,7 @@
 import rich
 import rich.markdown
 
-from .. import paths
-from ..external.mg5 import paths as mg5_paths
+from .. import external, paths
 from ._base import command
 
 
@@ -31,13 +30,13 @@ def mg5():
 @mg5.command()
 def patches():
     """List available patches."""
-    main(mg5_paths.patches, files=True)
+    main(external.mg5.paths.patches, files=True)
 
 
 @mg5.command()
 def cuts():
     """List available cuts."""
-    main(mg5_paths.cuts_code, files=True)
+    main(external.mg5.paths.cuts_code, files=True)
 
 
 def main(path, files=False, prefix=""):
diff --git a/runcardsrunner/external/__init__.py b/runcardsrunner/external/__init__.py
index e69de29b..bb95b86d 100644
--- a/runcardsrunner/external/__init__.py
+++ b/runcardsrunner/external/__init__.py
@@ -0,0 +1 @@
+from . import mg5, yad
diff --git a/runcardsrunner/external/mg5/__init__.py b/runcardsrunner/external/mg5/__init__.py
index ac8bf1db..2f1856eb 100644
--- a/runcardsrunner/external/mg5/__init__.py
+++ b/runcardsrunner/external/mg5/__init__.py
@@ -7,9 +7,11 @@
 import pandas as pd
 import pineappl
 
-from ... import install, log, paths, tools
+from ... import install, log
+from ... import paths as gpaths
+from ... import tools
 from .. import interface
-from . import paths as mg5_paths
+from . import paths
 
 
 class Mg5(interface.External):
@@ -40,7 +42,7 @@ def run(self):
 
         # create output folder
         log.subprocess(
-            [str(paths.mg5_exe), str(output_file)],
+            [str(gpaths.mg5_exe), str(output_file)],
             cwd=self.dest,
             out=(self.dest / "output.log"),
         )
@@ -57,7 +59,7 @@ def run(self):
 
         # enforce proper analysis
         # - copy analysis.f
-        analysis = (paths.runcards / self.name / "analysis.f").read_text()
+        analysis = (gpaths.runcards / self.name / "analysis.f").read_text()
         (self.mg5_dir / "FixedOrderAnalysis" / f"{self.name}.f").write_text(analysis)
         # - update analysis card
         analysis_card = self.mg5_dir / "Cards" / "FO_analyse_card.dat"
@@ -72,7 +74,7 @@ def run(self):
         # launch file; for the time being we create the file here, but in the
         # future it should be read from the theory database EDIT: now available
         # in self.theory
-        variables = json.loads((paths.pkg / "variables.json").read_text())
+        variables = json.loads((gpaths.pkg / "variables.json").read_text())
         variables["LHAPDF_ID"] = self.pdf_id
 
         # replace the variables with their values
@@ -108,12 +110,13 @@ def run(self):
 
         if user_taumin is not None:
             set_tau_min_patch = (
-                (mg5_paths.patches / "set_tau_min.patch")
+                (paths.patches / "set_tau_min.patch")
                 .read_text()
                 .replace("@TAU_MIN@", f"{user_taumin}d0")
             )
             (self.dest / "set_tau_min.patch").write_text(set_tau_min_patch)
             self.tau_min = user_taumin
+            __import__("pdb").set_trace()
             tools.patch(set_tau_min_patch, self.mg5_dir)
 
         # parse launch file for other patches
@@ -126,7 +129,7 @@ def run(self):
 
         if len(enable_patches_list) != 0:
             for patch in enable_patches_list:
-                patch_file = mg5_paths.patches / patch
+                patch_file = paths.patches / patch
                 patch_file = patch_file.with_suffix(patch_file.suffix + ".patch")
                 if not patch_file.exists():
                     raise ValueError(
@@ -137,7 +140,7 @@ def run(self):
 
         # launch run
         log.subprocess(
-            [str(paths.mg5_exe), str(launch_file)],
+            [str(gpaths.mg5_exe), str(launch_file)],
             cwd=self.dest,
             out=self.dest / "launch.log",
         )
@@ -204,13 +207,15 @@ def collect_versions(self):
         versions = {}
         versions["mg5amc_revno"] = (
             subprocess.run(
-                "brz revno".split(), cwd=paths.mg5amc, stdout=subprocess.PIPE
+                "brz revno".split(), cwd=gpaths.mg5amc, stdout=subprocess.PIPE
             )
             .stdout.decode()
             .strip()
         )
         mg5amc_repo = (
-            subprocess.run("brz info".split(), cwd=paths.mg5amc, stdout=subprocess.PIPE)
+            subprocess.run(
+                "brz info".split(), cwd=gpaths.mg5amc, stdout=subprocess.PIPE
+            )
             .stdout.decode()
             .strip()
         )
@@ -243,7 +248,7 @@ def apply_user_cuts(cuts_file, user_cuts):
     marker_pos = find_marker_position("logical function passcuts_user", contents)
     marker_pos = marker_pos + 8
 
-    for fname in mg5_paths.cuts_variables.iterdir():
+    for fname in paths.cuts_variables.iterdir():
         name = fname.stem
         if any(i[0].startswith(name) for i in user_cuts):
             contents.insert(marker_pos, fname.read_text())
@@ -268,7 +273,7 @@ def apply_user_cuts(cuts_file, user_cuts):
 
             value = value + "d0"
 
-        code = (mg5_paths.cuts_code / f"{name}.f").read_text().format(value)
+        code = (paths.cuts_code / f"{name}.f").read_text().format(value)
         contents.insert(marker_pos, code)
 
     with open(cuts_file, "w") as fd:

From cd82ef551222946b01538e78456c1023d7d92e8b Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 16 Feb 2022 21:13:31 +0100
Subject: [PATCH 7/8] Upgrade pre-commit

---
 .pre-commit-config.yaml                       |  18 +-
 docs/source/conf.py                           |   1 +
 .../disable_njet_cut.patch                    |   2 +-
 nnpdf31_proc/ATLAS_TTB_13TEV_TOT/analysis.f   |   2 +-
 nnpdf31_proc/ATLAS_TTB_7TEV_TOT/analysis.f    |   2 +-
 .../ATLAS_TTB_8TEV_2L_TTRAP/analysis.f        |   2 +-
 nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TPT/analysis.f |   6 +-
 .../ATLAS_TTB_8TEV_LJ_TRAP/analysis.f         |   8 +-
 nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTM/analysis.f |   8 +-
 .../ATLAS_TTB_8TEV_LJ_TTRAP/analysis.f        |   8 +-
 nnpdf31_proc/ATLAS_TTB_8TEV_TOT/analysis.f    |   2 +-
 nnpdf31_proc/CMS_TTB_13TEV_2L_TPT/analysis.f  |   2 +-
 nnpdf31_proc/CMS_TTB_13TEV_2L_TRAP/analysis.f |   4 +-
 .../CMS_TTB_13TEV_2L_TTRAP/analysis.f         |   2 +-
 nnpdf31_proc/CMS_TTB_13TEV_LJ_TPT/analysis.f  |   2 +-
 nnpdf31_proc/CMS_TTB_13TEV_LJ_TRAP/analysis.f |   4 +-
 .../CMS_TTB_13TEV_LJ_TTRAP/analysis.f         |   2 +-
 rr                                            |   1 +
 run_implement_user_defined_cuts.py            | 197 +++++++++---------
 runcardsrunner/__init__.py                    |   1 +
 runcardsrunner/__main__.py                    |   1 +
 runcardsrunner/cli/__init__.py                |   1 +
 runcardsrunner/cli/_base.py                   |   1 +
 runcardsrunner/cli/install.py                 |   1 +
 runcardsrunner/cli/list.py                    |   1 +
 runcardsrunner/cli/merge.py                   |   1 +
 runcardsrunner/cli/run.py                     |   1 +
 runcardsrunner/cli/update.py                  |   1 +
 runcardsrunner/external/__init__.py           |   1 +
 runcardsrunner/external/interface.py          |   1 +
 runcardsrunner/external/mg5/__init__.py       |   2 +-
 runcardsrunner/external/mg5/paths.py          |   1 +
 runcardsrunner/external/yad.py                |   1 +
 runcardsrunner/install.py                     |   1 +
 runcardsrunner/log.py                         |   1 +
 runcardsrunner/paths.py                       |   1 +
 runcardsrunner/table.py                       |   1 +
 runcardsrunner/tools.py                       |   3 +-
 38 files changed, 167 insertions(+), 128 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 027f1be4..9373b13e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -2,17 +2,29 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.1.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-yaml
+      - id: check-toml
+      - id: check-merge-conflict
+      - id: debug-statements
+      - id: fix-encoding-pragma
   - repo: https://github.com/psf/black
-    rev: 21.6b0
+    rev: 22.1.0
     hooks:
       - id: black
+  - repo: https://github.com/asottile/blacken-docs
+    rev: v1.12.1
+    hooks:
+      - id: blacken-docs
   - repo: https://github.com/pycqa/isort
-    rev: 5.9.1
+    rev: 5.10.1
     hooks:
       - id: isort
         args: ["--profile", "black"]
+  - repo: https://github.com/asottile/pyupgrade
+    rev: v2.31.0
+    hooks:
+      - id: pyupgrade
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 60fd460f..54570a56 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 # Configuration file for the Sphinx documentation builder.
 #
 # This file only contains a selection of the most common options. For a full
diff --git a/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch b/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch
index 9f5edfbf..c91de1de 100644
--- a/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch
+++ b/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch
@@ -2,7 +2,7 @@
 +++ NLO/SubProcesses/cuts.f	2020-12-28 08:35:21.039628789 +0100
 @@ -267,10 +267,10 @@
  c******************************************************************************
- 
+
  c Apply the jet cuts
 -         if (njet .ne. nQCD .and. njet .ne. nQCD-1) then
 -            passcuts_user=.false.
diff --git a/nnpdf31_proc/ATLAS_TTB_13TEV_TOT/analysis.f b/nnpdf31_proc/ATLAS_TTB_13TEV_TOT/analysis.f
index 8a0aa254..f43f4479 100644
--- a/nnpdf31_proc/ATLAS_TTB_13TEV_TOT/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_13TEV_TOT/analysis.f
@@ -18,7 +18,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
diff --git a/nnpdf31_proc/ATLAS_TTB_7TEV_TOT/analysis.f b/nnpdf31_proc/ATLAS_TTB_7TEV_TOT/analysis.f
index 8a0aa254..f43f4479 100644
--- a/nnpdf31_proc/ATLAS_TTB_7TEV_TOT/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_7TEV_TOT/analysis.f
@@ -18,7 +18,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
diff --git a/nnpdf31_proc/ATLAS_TTB_8TEV_2L_TTRAP/analysis.f b/nnpdf31_proc/ATLAS_TTB_8TEV_2L_TTRAP/analysis.f
index 312472aa..c44f4a3b 100644
--- a/nnpdf31_proc/ATLAS_TTB_8TEV_2L_TTRAP/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_8TEV_2L_TTRAP/analysis.f
@@ -63,7 +63,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TPT/analysis.f b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TPT/analysis.f
index c897197f..a66547ee 100644
--- a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TPT/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TPT/analysis.f
@@ -24,7 +24,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
@@ -40,7 +40,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       double precision p(0:4,nexternal)
       double precision wgts(*)
       double precision pt_t
- 
+
       pt_t   = dsqrt(p(1,3)**2 + p(2,3)**2)
 
       call HwU_fill(1,pt_t,wgts)
@@ -50,7 +50,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       call HwU_fill(5,pt_t,wgts)
       call HwU_fill(6,pt_t,wgts)
 
- 999  return      
+ 999  return
       end
 
 ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
diff --git a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TRAP/analysis.f b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TRAP/analysis.f
index a5605a0a..5c234703 100644
--- a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TRAP/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TRAP/analysis.f
@@ -19,7 +19,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
@@ -36,13 +36,13 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       double precision wgts(*)
       double precision yt, getrapidity
       external getrapidity
- 
+
       yt  = abs(getrapidity(p(0,3), p(3,3)))
 
       call HwU_fill(1,yt,wgts)
       call HwU_fill(2,yt,wgts)
 
- 999  return      
+ 999  return
       end
 
 ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
@@ -59,7 +59,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTM/analysis.f b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTM/analysis.f
index 8c76f7a3..4b9c4ffa 100644
--- a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTM/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTM/analysis.f
@@ -25,7 +25,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
@@ -46,9 +46,9 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       do i=0,3
          pttx(i)=p(i,3)+p(i,4)
       enddo
-      
+
       mtt    = dsqrt(dot(pttx, pttx))
-      
+
       call HwU_fill(1,mtt,wgts)
       call HwU_fill(2,mtt,wgts)
       call HwU_fill(3,mtt,wgts)
@@ -57,7 +57,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       call HwU_fill(6,mtt,wgts)
       call HwU_fill(7,mtt,wgts)
 
- 999  return      
+ 999  return
       end
 
 ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
diff --git a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTRAP/analysis.f b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTRAP/analysis.f
index 9622c763..efb6f6a6 100644
--- a/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTRAP/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_8TEV_LJ_TTRAP/analysis.f
@@ -20,7 +20,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
@@ -31,7 +31,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       include 'nexternal.inc'
       integer istatus(nexternal)
       integer iPDG(nexternal)
-      integer ibody  
+      integer ibody
       integer i
       double precision p(0:4,nexternal)
       double precision wgts(*)
@@ -48,7 +48,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       call HwU_fill(2,yttx,wgts)
       call HwU_fill(3,yttx,wgts)
 
- 999  return      
+ 999  return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
@@ -65,7 +65,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/nnpdf31_proc/ATLAS_TTB_8TEV_TOT/analysis.f b/nnpdf31_proc/ATLAS_TTB_8TEV_TOT/analysis.f
index 8a0aa254..f43f4479 100644
--- a/nnpdf31_proc/ATLAS_TTB_8TEV_TOT/analysis.f
+++ b/nnpdf31_proc/ATLAS_TTB_8TEV_TOT/analysis.f
@@ -18,7 +18,7 @@ subroutine analysis_end(dummy)
       implicit none
       double precision dummy
       call HwU_write_file
-      return                
+      return
       end
 
 cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
diff --git a/nnpdf31_proc/CMS_TTB_13TEV_2L_TPT/analysis.f b/nnpdf31_proc/CMS_TTB_13TEV_2L_TPT/analysis.f
index 05f0bb08..544960c0 100644
--- a/nnpdf31_proc/CMS_TTB_13TEV_2L_TPT/analysis.f
+++ b/nnpdf31_proc/CMS_TTB_13TEV_2L_TPT/analysis.f
@@ -40,7 +40,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       double precision p(0:4,nexternal)
       double precision wgts(*)
       double precision pt_t
- 
+
       pt_t = dsqrt(p(1,3)**2 + p(2,3)**2)
 
       call HwU_fill(1,pt_t,wgts)
diff --git a/nnpdf31_proc/CMS_TTB_13TEV_2L_TRAP/analysis.f b/nnpdf31_proc/CMS_TTB_13TEV_2L_TRAP/analysis.f
index 7f63e0fe..3e35e154 100644
--- a/nnpdf31_proc/CMS_TTB_13TEV_2L_TRAP/analysis.f
+++ b/nnpdf31_proc/CMS_TTB_13TEV_2L_TRAP/analysis.f
@@ -37,7 +37,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       double precision wgts(*)
       double precision yt, getrapidity
       external getrapidity
- 
+
       yt = getrapidity(p(0,3), p(3,3))
 
       call HwU_fill(1,yt,wgts)
@@ -61,7 +61,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/nnpdf31_proc/CMS_TTB_13TEV_2L_TTRAP/analysis.f b/nnpdf31_proc/CMS_TTB_13TEV_2L_TTRAP/analysis.f
index 84f60e38..5e3df97b 100644
--- a/nnpdf31_proc/CMS_TTB_13TEV_2L_TTRAP/analysis.f
+++ b/nnpdf31_proc/CMS_TTB_13TEV_2L_TTRAP/analysis.f
@@ -65,7 +65,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/nnpdf31_proc/CMS_TTB_13TEV_LJ_TPT/analysis.f b/nnpdf31_proc/CMS_TTB_13TEV_LJ_TPT/analysis.f
index 9ed47e5a..441d1d95 100644
--- a/nnpdf31_proc/CMS_TTB_13TEV_LJ_TPT/analysis.f
+++ b/nnpdf31_proc/CMS_TTB_13TEV_LJ_TPT/analysis.f
@@ -38,7 +38,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       double precision p(0:4,nexternal)
       double precision wgts(*)
       double precision pt_t
- 
+
       pt_t = dsqrt(p(1,3)**2 + p(2,3)**2)
 
       call HwU_fill(1,pt_t,wgts)
diff --git a/nnpdf31_proc/CMS_TTB_13TEV_LJ_TRAP/analysis.f b/nnpdf31_proc/CMS_TTB_13TEV_LJ_TRAP/analysis.f
index 55c4667a..0cc93ed0 100644
--- a/nnpdf31_proc/CMS_TTB_13TEV_LJ_TRAP/analysis.f
+++ b/nnpdf31_proc/CMS_TTB_13TEV_LJ_TRAP/analysis.f
@@ -36,7 +36,7 @@ subroutine analysis_fill(p,istatus,ipdg,wgts,ibody)
       double precision wgts(*)
       double precision yt, getrapidity
       external getrapidity
- 
+
       yt = abs(getrapidity(p(0,3), p(3,3)))
 
       call HwU_fill(1,yt,wgts)
@@ -59,7 +59,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/nnpdf31_proc/CMS_TTB_13TEV_LJ_TTRAP/analysis.f b/nnpdf31_proc/CMS_TTB_13TEV_LJ_TTRAP/analysis.f
index 55f8f77f..e356b6fd 100644
--- a/nnpdf31_proc/CMS_TTB_13TEV_LJ_TTRAP/analysis.f
+++ b/nnpdf31_proc/CMS_TTB_13TEV_LJ_TTRAP/analysis.f
@@ -63,7 +63,7 @@ function getrapidity(en,pl)
          else
             y=sign(1.d0,pl)*1.d8
          endif
-      else 
+      else
          y=sign(1.d0,pl)*1.d8
       endif
       getrapidity=y
diff --git a/rr b/rr
index b0689f70..1c2402a5 100755
--- a/rr
+++ b/rr
@@ -1,4 +1,5 @@
 #!/usr/bin/env python3
+# -*- coding: utf-8 -*-
 """
 Zero-dependency bootstrap script
 """
diff --git a/run_implement_user_defined_cuts.py b/run_implement_user_defined_cuts.py
index 526f1eda..92348642 100755
--- a/run_implement_user_defined_cuts.py
+++ b/run_implement_user_defined_cuts.py
@@ -1,47 +1,48 @@
 #!/usr/bin/env python3
+# -*- coding: utf-8 -*-
 
 import os.path
 import sys
 
 cuts_variables = {
-    'abscoscs': '''c     variables for abscoscs cuts
+    "abscoscs": """c     variables for abscoscs cuts
       real*8 zcoscs,zenl,zptxl,zptyl,zpzl,zenal,zptxal,zptyal,zpzal
       real*8 zpzll,zmll,zp1p,zp1m,zp2p,zp2m,zpt2ll
       integer zlep,zalep
-''',
-    'atlas_dy3d_8tev': '''c variables for atlas_dy3d_8tev cut
+""",
+    "atlas_dy3d_8tev": """c variables for atlas_dy3d_8tev cut
       real*8 ppl(0:3),pplb(0:3)
       real*8 p1p,p1m,p2p,p2m,pzll,pt2ll
       real*8 xmll,xyll,xcos,xlimit
-''',
-    'atlas_wzrap11_cf': '''c variables for atlas_wzrap11_cf cut
+""",
+    "atlas_wzrap11_cf": """c variables for atlas_wzrap11_cf cut
       real*8 ppl(0:4),pplb(0:4)
       real*8 xyll,xeta1,xeta2
-''',
-    'atlas_1jet_8tev_r06': '''c     variables for atlas_1jet_8tev_r06 cuts
+""",
+    "atlas_1jet_8tev_r06": """c     variables for atlas_1jet_8tev_r06 cuts
       real*8 xptj,xyj
       logical xjet
-''',
-    'cms_2jet_3d_8tev': '''c
+""",
+    "cms_2jet_3d_8tev": """c
       real*8 xystar,xyboost,xptavg
-''',
-    'ptmiss': '''c variables for ptmiss cut
+""",
+    "ptmiss": """c variables for ptmiss cut
       real*8 xptmiss(1:2)
-''',
-    'mtw': '''c variables for ptmiss cut
+""",
+    "mtw": """c variables for ptmiss cut
       real*8 xmtw
-''',
+""",
 }
 
 cuts_code = {
-    'mjj': '''c     cut on the invariant mass of the leading jets
+    "mjj": """c     cut on the invariant mass of the leading jets
       if (invm2_04(pjet(0,1),pjet(0,2),1d0) .lt. ({})**2) then
         passcuts_user=.false.
         return
       endif
 
-''',
-    'dyjj': '''c     cut on the rapidity separation of the leading jets
+""",
+    "dyjj": """c     cut on the rapidity separation of the leading jets
       tmpvar=atanh(pjet(3,1)/pjet(0,1))
      &      -atanh(pjet(3,2)/pjet(0,2))
       if (abs(tmpvar) .lt. {}) then
@@ -49,8 +50,8 @@
         return
       endif
 
-''',
-    'mmllmax': '''c     cut for mmllmax (SFOS lepton pairs)
+""",
+    "mmllmax": """c     cut for mmllmax (SFOS lepton pairs)
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -64,8 +65,8 @@
         endif
       enddo
 
-''',
-    'ptl1min': '''c     cut for ptl1min (leading lepton)
+""",
+    "ptl1min": """c     cut for ptl1min (leading lepton)
       j = 0
       do i=1,nexternal
         if (is_a_lm(i) .or. is_a_lp(i)) then
@@ -79,15 +80,15 @@
         return
       endif
 
-''',
-    'ptj1min': '''c     cut for ptl1min (leading jet)
+""",
+    "ptj1min": """c     cut for ptl1min (leading jet)
       if (pt(pjet(0,1)) .lt. {}) then
         passcuts_user=.false.
         return
       endif
 
-''',
-    'yll': '''c     cut on the rapidity of the two leading leptons
+""",
+    "yll": """c     cut on the rapidity of the two leading leptons
       j = 0 ! leading lepton index
       mm = 0 ! subleading lepton index
       do i=1,nexternal
@@ -116,8 +117,8 @@
         return
       endif
 
-''',
-    'ptzmin': '''c     cut on the pt of SFOS lepton pairs
+""",
+    "ptzmin": """c     cut on the pt of SFOS lepton pairs
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -132,8 +133,8 @@
         endif
       enddo
 
-''',
-    'ptzmax': '''c     cut on the pt of SFOS lepton pairs
+""",
+    "ptzmax": """c     cut on the pt of SFOS lepton pairs
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -148,8 +149,8 @@
         endif
       enddo
 
-''',
-    'yz': '''c     cut on the rapidity of SFOS lepton pairs
+""",
+    "yz": """c     cut on the rapidity of SFOS lepton pairs
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -164,8 +165,8 @@
         endif
       enddo
 
-''',
-    'yh': '''c     cut on Higgs particles
+""",
+    "yh": """c     cut on Higgs particles
       do i=1,nexternal
         if (ipdg_reco(i) .eq. 25) then
           if (abs(atanh(p_reco(3,i)/p_reco(0,i)))
@@ -176,8 +177,8 @@
         endif
       enddo
 
-''',
-    'yt': '''c     cut on top particles
+""",
+    "yt": """c     cut on top particles
       do i=1,nexternal
         if (ipdg_reco(i).eq.6 .or. ipdg_reco(i).eq.-6) then
           if (abs(atanh(p_reco(3,i)/p_reco(0,i)))
@@ -188,8 +189,8 @@
         endif
       enddo
 
-''',
-    'abscoscsmin': '''c     cut on the minimum of the absolute value of the cosine of the Collins-Soper angle of SFOS pairs
+""",
+    "abscoscsmin": """c     cut on the minimum of the absolute value of the cosine of the Collins-Soper angle of SFOS pairs
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -230,8 +231,8 @@
         endif
       enddo
 
-''',
-    'minetal': '''c     cut on the minimum pseudorapidity of leptons
+""",
+    "minetal": """c     cut on the minimum pseudorapidity of leptons
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           if (abs(atanh(p_reco(3,i)/sqrt(p_reco(1,i)**2+p_reco(2,i)**2+
@@ -242,8 +243,8 @@
         endif
       enddo
 
-''',
-    'abscoscsmax': '''c     cut on the maximum of the absolute value of the cosine of the Collins-Soper angle of SFOS pairs
+""",
+    "abscoscsmax": """c     cut on the maximum of the absolute value of the cosine of the Collins-Soper angle of SFOS pairs
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -284,8 +285,8 @@
         endif
       enddo
 
-''',
-    'yzmin': '''c     cut on the rapidity of SFOS lepton pairs
+""",
+    "yzmin": """c     cut on the rapidity of SFOS lepton pairs
       do i=1,nexternal-1
         if (is_a_lm(i) .or. is_a_lp(i)) then
           do j=i+1,nexternal
@@ -300,8 +301,8 @@
         endif
       enddo
 
-''',
-    'atlas_dy3d_8tev': '''c
+""",
+    "atlas_dy3d_8tev": """c
       if ({}) then
         do j = nincoming+1, nexternal
           if (iPDG_reco(j).eq.13) ppl(0:3)=p_reco(0:3,j)
@@ -432,8 +433,8 @@
           return
         endif
       endif
-''',
-    'atlas_wzrap11_cf': '''c
+""",
+    "atlas_wzrap11_cf": """c
       if ({}) then
         do i = nincoming+1, nexternal
           if (iPDG_reco(i).eq.13) then
@@ -467,8 +468,8 @@
           return
         endif
       endif
-''',
-    'atlas_2jet_7tev_r06_0005': '''c
+""",
+    "atlas_2jet_7tev_r06_0005": """c
       if ({}) then
         if (njet < 2) then
           passcuts_user=.false.
@@ -489,8 +490,8 @@
         end block
       endif
 
-''',
-    'atlas_2jet_7tev_r06_0510': '''c
+""",
+    "atlas_2jet_7tev_r06_0510": """c
       if ({}) then
         if (njet < 2) then
           passcuts_user=.false.
@@ -511,8 +512,8 @@
         end block
       endif
 
-''',
-    'atlas_2jet_7tev_r06_1015': '''c
+""",
+    "atlas_2jet_7tev_r06_1015": """c
       if ({}) then
         if (njet < 2) then
           passcuts_user=.false.
@@ -533,8 +534,8 @@
         end block
       endif
 
-''',
-    'atlas_2jet_7tev_r06_1520': '''c
+""",
+    "atlas_2jet_7tev_r06_1520": """c
       if ({}) then
         if (njet < 2) then
           passcuts_user=.false.
@@ -555,8 +556,8 @@
         end block
       endif
 
-''',
-    'atlas_2jet_7tev_r06_2025': '''c
+""",
+    "atlas_2jet_7tev_r06_2025": """c
       if ({}) then
         if (njet < 2) then
           passcuts_user=.false.
@@ -577,8 +578,8 @@
         end block
       endif
 
-''',
-    'atlas_2jet_7tev_r06_2530': '''c
+""",
+    "atlas_2jet_7tev_r06_2530": """c
       if ({}) then
         if (njet < 2) then
           passcuts_user=.false.
@@ -599,8 +600,8 @@
         end block
       endif
 
-''',
-    'atlas_1jet_8tev_r06': '''c
+""",
+    "atlas_1jet_8tev_r06": """c
       if ({}) then
         xjet=.false.
 
@@ -647,8 +648,8 @@
         endif
       endif
 
-''',
-    'cms_2jets_7tev_0005': '''c
+""",
+    "cms_2jets_7tev_0005": """c
       if ({}) then
         block
           real*8 xymax, xmjj
@@ -669,8 +670,8 @@
         end block
       end if
 
-''',
-    'cms_2jets_7tev_0510': '''c
+""",
+    "cms_2jets_7tev_0510": """c
       if ({}) then
         block
           real*8 xymax, xmjj
@@ -691,8 +692,8 @@
         end block
       end if
 
-''',
-    'cms_2jets_7tev_1015': '''c
+""",
+    "cms_2jets_7tev_1015": """c
       if ({}) then
         block
           real*8 xymax, xmjj
@@ -713,8 +714,8 @@
         end block
       end if
 
-''',
-    'cms_2jets_7tev_1520': '''c
+""",
+    "cms_2jets_7tev_1520": """c
       if ({}) then
         block
           real*8 xymax, xmjj
@@ -735,8 +736,8 @@
         end block
       end if
 
-''',
-    'cms_2jets_7tev_2025': '''c
+""",
+    "cms_2jets_7tev_2025": """c
       if ({}) then
         block
           real*8 xymax, xmjj
@@ -757,8 +758,8 @@
         end block
       end if
 
-''',
-    'cms_2jet_3d_8tev': '''c
+""",
+    "cms_2jet_3d_8tev": """c
       if ({}) then
         if (njet.lt.2) then
           passcuts_user=.false.
@@ -827,8 +828,8 @@
         endif
       endif
 
-''',
-    'ptmiss': '''c     cut on the sum of all missing transverse momentum
+""",
+    "ptmiss": """c     cut on the sum of all missing transverse momentum
       xptmiss=0d0
 
       do i=3,nexternal
@@ -845,8 +846,8 @@
         return
       endif
 
-''',
-    'mtw': '''c     cut on the transverse mass of W bosons
+""",
+    "mtw": """c     cut on the transverse mass of W bosons
       do i=3,nexternal
         do j=i+1,nexternal
           if (is_a_lm(i) .or. is_a_lp(i) .or.
@@ -864,19 +865,19 @@
         enddo
       enddo
 
-''',
+""",
 }
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     if len(sys.argv) < 5:
-        print('Error: wrong number of arguments: {}'.format(sys.argv))
+        print("Error: wrong number of arguments: {}".format(sys.argv))
         exit(1)
 
     # the name of the file we want to patch
     filename = sys.argv[1]
 
     if not os.path.exists(filename):
-        print('Error: cut file `{}` does not exist'.format(filename))
+        print("Error: cut file `{}` does not exist".format(filename))
         exit(2)
 
     for i in zip(sys.argv[2::3], sys.argv[3::3], sys.argv[4::3]):
@@ -884,17 +885,17 @@
 
         # check if the cut is recognised
         if not name in cuts_code:
-            print('Error: unrecognised cut: {}'.format(name))
+            print("Error: unrecognised cut: {}".format(name))
             exit(3)
 
-        if i[1] != '=':
-            print('Error: wrong argument format')
+        if i[1] != "=":
+            print("Error: wrong argument format")
             exit(4)
 
-    with open(filename, 'r') as fd:
+    with open(filename, "r") as fd:
         contents = fd.readlines()
 
-    insertion_marker = 'logical function passcuts_user'
+    insertion_marker = "logical function passcuts_user"
     marker_pos = -1
 
     for lineno, value in enumerate(contents):
@@ -903,8 +904,11 @@
             break
 
     if marker_pos == -1:
-        print('Error: could not find insertion marker `{}` in cut file `{}`'
-            .format(insertion_marker, filename))
+        print(
+            "Error: could not find insertion marker `{}` in cut file `{}`".format(
+                insertion_marker, filename
+            )
+        )
         exit(5)
 
     marker_pos = marker_pos + 8
@@ -913,7 +917,7 @@
         if any(i[0].startswith(name) for i in zip(sys.argv[2::3])):
             contents.insert(marker_pos, cuts_variables[name])
 
-    insertion_marker = 'USER-DEFINED CUTS'
+    insertion_marker = "USER-DEFINED CUTS"
     marker_pos = -1
 
     for lineno, value in enumerate(contents):
@@ -922,14 +926,17 @@
             break
 
     if marker_pos == -1:
-        print('Error: could not find insertion marker `{}` in cut file `{}`'
-            .format(insertion_marker, filename))
+        print(
+            "Error: could not find insertion marker `{}` in cut file `{}`".format(
+                insertion_marker, filename
+            )
+        )
         exit(5)
 
     # skip some lines with comments
     marker_pos = marker_pos + 4
     # insert and empty line
-    contents.insert(marker_pos - 1, '\n')
+    contents.insert(marker_pos - 1, "\n")
 
     for i in zip(reversed(sys.argv[2::3]), reversed(sys.argv[4::3])):
         name = i[0]
@@ -943,12 +950,12 @@
             try:
                 float(value)
             except ValueError:
-                print('Error: format of value `{}` not understood'.format(value))
+                print("Error: format of value `{}` not understood".format(value))
                 exit(6)
-            value = value + 'd0'
+            value = value + "d0"
 
         code = cuts_code[name].format(value)
         contents.insert(marker_pos, code)
 
-    with open(filename, 'w') as fd:
+    with open(filename, "w") as fd:
         fd.writelines(contents)
diff --git a/runcardsrunner/__init__.py b/runcardsrunner/__init__.py
index 3871419c..67dab754 100644
--- a/runcardsrunner/__init__.py
+++ b/runcardsrunner/__init__.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 __version__ = "0.0.0"
 
 
diff --git a/runcardsrunner/__main__.py b/runcardsrunner/__main__.py
index 4258c4a9..a6d31a17 100644
--- a/runcardsrunner/__main__.py
+++ b/runcardsrunner/__main__.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 from . import command
 
 command()
diff --git a/runcardsrunner/cli/__init__.py b/runcardsrunner/cli/__init__.py
index 8735bd24..7216222d 100644
--- a/runcardsrunner/cli/__init__.py
+++ b/runcardsrunner/cli/__init__.py
@@ -1,2 +1,3 @@
+# -*- coding: utf-8 -*-
 from . import install, list, merge, run, update
 from ._base import command
diff --git a/runcardsrunner/cli/_base.py b/runcardsrunner/cli/_base.py
index 8cb7d38b..b53d3aff 100644
--- a/runcardsrunner/cli/_base.py
+++ b/runcardsrunner/cli/_base.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import click
 
 
diff --git a/runcardsrunner/cli/install.py b/runcardsrunner/cli/install.py
index aebc5dae..84518adc 100644
--- a/runcardsrunner/cli/install.py
+++ b/runcardsrunner/cli/install.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import click
 
 from .. import install
diff --git a/runcardsrunner/cli/list.py b/runcardsrunner/cli/list.py
index 0205c4c9..11448f98 100644
--- a/runcardsrunner/cli/list.py
+++ b/runcardsrunner/cli/list.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import rich
 import rich.markdown
 
diff --git a/runcardsrunner/cli/merge.py b/runcardsrunner/cli/merge.py
index 2c1cab0a..d1b24173 100644
--- a/runcardsrunner/cli/merge.py
+++ b/runcardsrunner/cli/merge.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import itertools
 import pathlib
 import re
diff --git a/runcardsrunner/cli/run.py b/runcardsrunner/cli/run.py
index 54b93548..a3475dd7 100644
--- a/runcardsrunner/cli/run.py
+++ b/runcardsrunner/cli/run.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import pathlib
 import time
 
diff --git a/runcardsrunner/cli/update.py b/runcardsrunner/cli/update.py
index 4814a309..e384600b 100644
--- a/runcardsrunner/cli/update.py
+++ b/runcardsrunner/cli/update.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import pathlib
 import shutil
 
diff --git a/runcardsrunner/external/__init__.py b/runcardsrunner/external/__init__.py
index bb95b86d..ff1b7c3c 100644
--- a/runcardsrunner/external/__init__.py
+++ b/runcardsrunner/external/__init__.py
@@ -1 +1,2 @@
+# -*- coding: utf-8 -*-
 from . import mg5, yad
diff --git a/runcardsrunner/external/interface.py b/runcardsrunner/external/interface.py
index 5e6ba3e0..4afe7101 100644
--- a/runcardsrunner/external/interface.py
+++ b/runcardsrunner/external/interface.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import abc
 import os
 import shutil
diff --git a/runcardsrunner/external/mg5/__init__.py b/runcardsrunner/external/mg5/__init__.py
index 2f1856eb..a60d95f5 100644
--- a/runcardsrunner/external/mg5/__init__.py
+++ b/runcardsrunner/external/mg5/__init__.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import json
 import re
 import subprocess
@@ -116,7 +117,6 @@ def run(self):
             )
             (self.dest / "set_tau_min.patch").write_text(set_tau_min_patch)
             self.tau_min = user_taumin
-            __import__("pdb").set_trace()
             tools.patch(set_tau_min_patch, self.mg5_dir)
 
         # parse launch file for other patches
diff --git a/runcardsrunner/external/mg5/paths.py b/runcardsrunner/external/mg5/paths.py
index f3f98629..9bcbdc73 100644
--- a/runcardsrunner/external/mg5/paths.py
+++ b/runcardsrunner/external/mg5/paths.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import pathlib
 
 subpkg = pathlib.Path(__file__).absolute().parent
diff --git a/runcardsrunner/external/yad.py b/runcardsrunner/external/yad.py
index 3bf7f04a..123ad80d 100644
--- a/runcardsrunner/external/yad.py
+++ b/runcardsrunner/external/yad.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 from functools import reduce
 
 import lhapdf
diff --git a/runcardsrunner/install.py b/runcardsrunner/install.py
index a839524d..03f06601 100644
--- a/runcardsrunner/install.py
+++ b/runcardsrunner/install.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import os
 import pathlib
 import shutil
diff --git a/runcardsrunner/log.py b/runcardsrunner/log.py
index 61f975d6..47e272bb 100644
--- a/runcardsrunner/log.py
+++ b/runcardsrunner/log.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import pathlib
 import subprocess as sp
 import sys
diff --git a/runcardsrunner/paths.py b/runcardsrunner/paths.py
index 7e617ced..0419d0e4 100644
--- a/runcardsrunner/paths.py
+++ b/runcardsrunner/paths.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import pathlib
 import shutil
 import tempfile
diff --git a/runcardsrunner/table.py b/runcardsrunner/table.py
index 04fcc607..3a279d24 100644
--- a/runcardsrunner/table.py
+++ b/runcardsrunner/table.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import inspect
 import itertools
 
diff --git a/runcardsrunner/tools.py b/runcardsrunner/tools.py
index a87c0e41..21660c8a 100644
--- a/runcardsrunner/tools.py
+++ b/runcardsrunner/tools.py
@@ -1,3 +1,4 @@
+# -*- coding: utf-8 -*-
 import datetime
 import itertools
 import subprocess
@@ -246,7 +247,7 @@ def common_substring(s1, s2, *sn):
                 # iterate over all elements
                 for n, (c1, c2, *cn) in enumerate(zip(s1, s2, *sn))
                 # if they are all equal keep going
-                if len(set([c1, c2, *cn])) > 1
+                if len({c1, c2, *cn}) > 1
             )
         ]
     except StopIteration:

From 0b1f2a56f292a029ac4db384a232f31da53d32b1 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 16 Feb 2022 23:01:58 +0100
Subject: [PATCH 8/8] Exclude patches from pre-commit

---
 .pre-commit-config.yaml                          |  1 +
 .../ATLAS_1JET_8TEV_R06/disable_njet_cut.patch   |  2 +-
 .../mg5/patches/change_etaj_to_rapj.patch        | 16 ++++++++--------
 .../external/mg5/patches/set_tau_min.patch       |  2 +-
 4 files changed, 11 insertions(+), 10 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 9373b13e..12069b0a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,5 +1,6 @@
 # See https://pre-commit.com for more information
 # See https://pre-commit.com/hooks.html for more hooks
+exclude: '^.*\.patch$'
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v4.1.0
diff --git a/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch b/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch
index c91de1de..9f5edfbf 100644
--- a/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch
+++ b/nnpdf31_proc/ATLAS_1JET_8TEV_R06/disable_njet_cut.patch
@@ -2,7 +2,7 @@
 +++ NLO/SubProcesses/cuts.f	2020-12-28 08:35:21.039628789 +0100
 @@ -267,10 +267,10 @@
  c******************************************************************************
-
+ 
  c Apply the jet cuts
 -         if (njet .ne. nQCD .and. njet .ne. nQCD-1) then
 -            passcuts_user=.false.
diff --git a/runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch b/runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch
index 73f9df42..f7bdc5d4 100644
--- a/runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch
+++ b/runcardsrunner/external/mg5/patches/change_etaj_to_rapj.patch
@@ -2,16 +2,16 @@
 +++ NLO/SubProcesses/fastjetfortran_madfks_core.cc	2020-11-27 18:13:47.285826142 +0100
 @@ -76,7 +76,7 @@
    /// and the extraction of the jets
-   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart,
+   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart, 
                                   const JetDefinition & jet_def,
 -                                 const double & ptmin, const double & etamax,
 +                                 const double & ptmin, const double & rapmax,
  				 double * f77jets, int & njets, int * whichjet) {
-
+ 
      // transfer p[4*ipart+0..3] -> input_particles[i]
 @@ -90,9 +90,9 @@
      jets = sorted_by_pt(cs->inclusive_jets(ptmin));
-
+ 
      //apply the eta selector if etamax >0
 -    Selector select_eta = SelectorAbsEtaMax(etamax);
 -    if (etamax > 0.) {
@@ -20,22 +20,22 @@
 +    if (rapmax > 0.) {
 +        jets = select_rap(jets);
      }
-
+ 
      // transfer jets -> f77jets[4*ijet+0..3]
 --- NLO/SubProcesses/fastjetfortran_madfks_full.cc.orig	2020-11-27 18:11:12.687075955 +0100
 +++ NLO/SubProcesses/fastjetfortran_madfks_full.cc	2020-11-27 18:13:47.289826110 +0100
 @@ -79,7 +79,7 @@
    /// and the extraction of the jets
-   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart,
+   void amcatnlo_transfer_cluster_transfer(const double * p, const int & npart, 
                                   const JetDefinition & jet_def,
 -                                 const double & ptmin, const double & etamax,
 +                                 const double & ptmin, const double & rapmax,
  				 double * f77jets, int & njets, int * whichjet,
- 				 const double & ghost_maxrap = 0.0,
+ 				 const double & ghost_maxrap = 0.0,  
  				 const int & nrepeat = 0, const double & ghost_area = 0.0) {
 @@ -101,9 +101,9 @@
      jets = sorted_by_pt(cs->inclusive_jets(ptmin));
-
+ 
      //apply the eta selector if etamax >0
 -    Selector select_eta = SelectorAbsEtaMax(etamax);
 -    if (etamax > 0.) {
@@ -44,5 +44,5 @@
 +    if (rapmax > 0.) {
 +        jets = select_rap(jets);
      }
-
+ 
      // transfer jets -> f77jets[4*ijet+0..3]
diff --git a/runcardsrunner/external/mg5/patches/set_tau_min.patch b/runcardsrunner/external/mg5/patches/set_tau_min.patch
index c3455dd9..17b8eddb 100644
--- a/runcardsrunner/external/mg5/patches/set_tau_min.patch
+++ b/runcardsrunner/external/mg5/patches/set_tau_min.patch
@@ -146,7 +146,7 @@
 -                     else
 -                        smin_update = dsqrt(smin_update)/nb_iden_pdg ! share over N particle, and change dimension
 -                     endif
--                     ! update in sqrt(s) so take the
+-                     ! update in sqrt(s) so take the 
 -                     if  (j_fks.gt.nincoming) then
 -                        taumin(iFKS,ichan)=taumin(iFKS,ichan) + smin_update
 -                     else