diff --git a/.gitignore b/.gitignore index 4cc18b2e..914e85e7 100644 --- a/.gitignore +++ b/.gitignore @@ -129,3 +129,6 @@ dmypy.json # Pyre type checker .pyre/ + +# visual studio +.vscode/ diff --git a/.readthedocs.yaml b/.readthedocs.yaml new file mode 100644 index 00000000..e85e5e26 --- /dev/null +++ b/.readthedocs.yaml @@ -0,0 +1,27 @@ +# Read the Docs configuration file +# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details + +# Required +version: 2 + +# Set the version of Python and other tools you might need +build: + os: ubuntu-20.04 # is required: see https://github.com/readthedocs/readthedocs.org/issues/8912 + tools: + python: "3.10" + +# Build documentation in the docs/ directory with Sphinx +sphinx: + configuration: docs/source/conf.py + +# Optionally build your docs in additional formats such as PDF +# formats: +# - pdf + +# Optionally set requirements required to build your docs +python: + install: + - method: pip + path: . + extra_requirements: + - docs \ No newline at end of file diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 00000000..a497e14e --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,44 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD = sphinx-build +SOURCEDIR = source +BUILDDIR = build + +PINEKODIR = ../src/eko +PINEKOOUT = $(SOURCEDIR)/modules/pineko + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +server: + python3 -m http.server 8000 --bind 127.0.0.1 --directory $(BUILDDIR)/html + +view: html + $(BROWSER) $(BUILDDIR)/html/index.html + + +clean: + rm -rf build + rm -rf _build + +cleanall: clean clean-todos + rm -rf $(PINEKOOUT) + +# TODOs +todos: + python generate_code_todos.py "$(PINEKODIR)" "$(TODOOUTFILE)" + +clean-todos: + rm "$(TODOOUTFILE)" diff --git a/docs/make.bat b/docs/make.bat new file mode 100644 index 00000000..747ffb7b --- /dev/null +++ b/docs/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=source +set BUILDDIR=build + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.https://www.sphinx-doc.org/ + exit /b 1 +) + +if "%1" == "" goto help + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/docs/source/conf.py b/docs/source/conf.py new file mode 100644 index 00000000..8f55365d --- /dev/null +++ b/docs/source/conf.py @@ -0,0 +1,103 @@ +# -*- coding: utf-8 -*- +# Configuration file for the Sphinx documentation builder. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Path setup -------------------------------------------------------------- + +# If extensions (or modules to document with autodoc) are in another directory, +# add these directories to sys.path here. If the directory is relative to the +# documentation root, use os.path.abspath to make it absolute, like shown here. +# +# import os +# import sys +# sys.path.insert(0, os.path.abspath('.')) + +import inspect +import pathlib + +import pineko + +here = pathlib.Path(__file__).absolute().parent + +# -- Project information ----------------------------------------------------- + +project = "pineko" +copyright = "2022, Andrea Barontini, Alessandro Candido, Felix Hekhorn" +author = "Andrea Barontini, Alessandro Candido, Felix Hekhorn" + + +# -- General configuration --------------------------------------------------- + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [ + "sphinx.ext.autodoc", + "sphinx.ext.doctest", + "sphinx.ext.intersphinx", + "sphinx.ext.todo", + "sphinx.ext.coverage", + "sphinx.ext.mathjax", + "sphinx.ext.ifconfig", + "sphinx.ext.viewcode", + "sphinx.ext.autosectionlabel", + "sphinxcontrib.bibtex", + "sphinx.ext.napoleon", + "sphinx.ext.graphviz", + "sphinx.ext.extlinks", +] +autosectionlabel_prefix_document = True +# autosectionlabel_maxdepth = 10 +# Allow to embed rst syntax in markdown files. +enable_eval_rst = True +# The master toctree document. +master_doc = "index" +bibtex_bibfiles = ["refs.bib"] + +# Add any paths that contain templates here, relative to this directory. +templates_path = ["_templates"] + +# The suffix(es) of source filenames. +# You can specify multiple suffix as a list of string: +# +source_suffix = { + ".rst": "restructuredtext", + ".txt": "restructuredtext", +} +use_index=True +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = ["shared/*"] + +# A string to be included at the beginning of all files +shared = here / "shared" +rst_prolog = "\n".join( + [x.read_text(encoding="utf-8") for x in pathlib.Path(shared).glob("*.rst")] +) + +extlinks = { + "yadism": ("https://n3pdf.github.io/yadism/%s", "yadism"), + "banana": ("https://n3pdf.github.io/banana/%s", "banana"), + "pineappl": ("https://n3pdf.github.io/pineappl/%s", "pineappl"), + "eko": ("https://github.com/N3PDF/eko/%s", "eko"), +} +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = "sphinx_rtd_theme" + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". + +html_static_path = [] + +html_css_files = [ + 'site.css', +] diff --git a/docs/source/index.rst b/docs/source/index.rst new file mode 100644 index 00000000..1491aee4 --- /dev/null +++ b/docs/source/index.rst @@ -0,0 +1,58 @@ +.. pineko documentation master file, created by + sphinx-quickstart on Thu May 19 12:37:23 2022. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +***************************** +`pineko` = `PineAPPL` + `eko` +***************************** + +.. toctree:: + :maxdepth: 1 + :caption: Overview: + :hidden: + + overview/prerequisites + overview/running + overview/examples + overview/indices + +.. toctree:: + :maxdepth: 1 + :caption: Theory: + :hidden: + + theory/fktables + theory/scalevar + + + zzz-refs + +**pineko** converts + +- interpolation grids for theory predictions (*grids* for short) in the form of + |pineappl| grids, together with +- |EKO| generated by |eko| + +into fast-kernel (**FK**) tables. The collection of all FK tables constitute the +theory predictions for a PDF fit and therefore is often simply called *theory*. + +*pineko* is: + +* open-source since the beginning - allowing a community effort for writing a new generation of code + +* written in Python - opting for a popular, high-level langauge to facilitate other authors to participate in the project + +* part of the N3PDF software compendium: |eko|, |banana|, |pineappl| and |yadism| + +`pineko` replaces `APFELcomb `_ , which was +used up to NNPDF4.0. + + + + + + + + + diff --git a/docs/source/overview/Prerequisites.rst b/docs/source/overview/Prerequisites.rst new file mode 100644 index 00000000..d7c9b359 --- /dev/null +++ b/docs/source/overview/Prerequisites.rst @@ -0,0 +1,67 @@ +############# +Prerequisites +############# + +Generating a *theory*, as defined above, requires several files which are +described next. + +*pineko.toml* +------------- + +You need to provide a *pineko.toml*, that provides all necessary paths to the input and output folders. +[**DEBUG**: Look at the **DEBUG** example in this repo [1]_.] + +*ymldb* +------- + +You need all files of the *ymldb* [2]_. [**DEBUG**: Look at the respective *load.sh* script to load from dom.] +This defines the mapping from datasets to FK tables. + +Theory Runcards +--------------- + +You need to provide the necessary theory runcards named with their respective theory ID inside the *paths.theory_cards* folder [3]_. + +Default Operator Card +--------------------- + +You need to provide a default operator card for |EKO| [4]_. +[**DEBUG**: Look at the respective *load.sh* script to load from dom.] + +Grids +----- + +*pineko* does **NOT** compute grids, which are instead expected input to *pineko*. +There are typically two ways to obtain grids: computing them from scratch with `runcards `_ +or reusing existing ones. + +Generate new Grids with *rr* +"""""""""""""""""""""""""""" + +You need to run *rr* with a given theory runcard and put the generated grid file with the same name +inside the *paths.grids/theory_id* folder. The name has to match the *ymldb* which is the case by default. + +Inherit Grids from Existing Theory +"""""""""""""""""""""""""""""""""" + +You can reuse the grids from a different theory by running:: + + pineko theory inherit-grids SOURCE_THEORY_ID TARGET_THEORY_ID DATASET1 DATASET2 ... + +The relation between the source theory and the target theory is non-trivial [5]_. + + +Notes +----- + +.. [1] Actually, instead we should provide a concise description here - but let's wait to be stable first + +.. [2] this is to be replaced by the new CommonData format + +.. [3] this is to be replaced by a binding to the true theory DB + +.. [4] I'm thinking how to improve this, because how could we provide a study on the interpolation accuracy? at the moment there just equal + +.. [5] examples being SV, different evolution settings, etc. + + diff --git a/docs/source/overview/examples.rst b/docs/source/overview/examples.rst new file mode 100644 index 00000000..a713be8e --- /dev/null +++ b/docs/source/overview/examples.rst @@ -0,0 +1,6 @@ +Examples +======== + +In this section some examples on how actually pineko can be used in +several situation are provided. + diff --git a/docs/source/overview/indices.rst b/docs/source/overview/indices.rst new file mode 100644 index 00000000..9a9d56c4 --- /dev/null +++ b/docs/source/overview/indices.rst @@ -0,0 +1,6 @@ +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` \ No newline at end of file diff --git a/docs/source/overview/running.rst b/docs/source/overview/running.rst new file mode 100644 index 00000000..892217d3 --- /dev/null +++ b/docs/source/overview/running.rst @@ -0,0 +1,50 @@ +################ +Running `pineko` +################ + +Running *pineko* consists of two steps - each of them being potentially computationally expensive: +computing the |EKO| and convoluting the |EKO| with the grid. + +Computing the |EKO| +------------------- + +Generating new |EKO| +"""""""""""""""""""" + +This is a two step process: + +#. Generate the necessary operator cards with:: + + pineko theory opcards THEORY_ID DATASET1 DATASET2 ... + + +#. Generate the actual EKOs with:: + + pineko theory ekos THEORY_ID DATASET1 DATASET2 ... + + + +Inherit |EKO| from Existing Theory +""""""""""""""""""""""""""""""""""" + +You can reuse the |EKO|"s from a different theory by running:: + + pineko theory inherit-ekos SOURCE_THEORY_ID TARGET_THEORY_ID DATASET1 DATASET2 ... + + +The relation between the source theory and the target theory is non-trivial [6]_. + +Generating the FK Table +----------------------- + +You need to have the |EKO| computed in the previous step. +Then you can convolute the |EKO| with the grids by running:: + + pineko theory fks THEORY_ID DATASET1 DATASET2 ... + + +Notes +----- + +.. [6] examples being SV, different DIS settings, etc. + diff --git a/docs/source/refs.bib b/docs/source/refs.bib new file mode 100644 index 00000000..51810740 --- /dev/null +++ b/docs/source/refs.bib @@ -0,0 +1,31 @@ +@misc{NNPDF:ThUncerta, + author = {Abdul Khalek, Rabah and others}, + collaboration = {NNPDF}, + title = {{Parton Distributions with Theory Uncertainties: General Formalism and First Phenomenological Studies}}, + eprint = {1906.10698}, + archiveprefix = {arXiv}, + primaryclass = {hep-ph}, + reportnumber = {Edinburgh 2019/9, Nikhef/2019-014, TIF-UNIMI-2019-9 DAMTP-2019-24, + CAVENDISH-HEP-19-11}, + doi = {10.1140/epjc/s10052-019-7401-4}, + journal = {Eur. Phys. J. C}, + volume = {79}, + number = {11}, + pages = {931}, + year = {2019} +} + + +@article{Ball:2010, + doi = {10.1016/j.nuclphysb.2010.05.008}, + url = {https://doi.org/10.1016%2Fj.nuclphysb.2010.05.008}, + year = 2010, + month = {oct}, + publisher = {Elsevier {BV}}, + volume = {838}, + number = {1-2}, + pages = {136--206}, + author = {Richard D. Ball and Luigi Del Debbio and Stefano Forte and Alberto Guffanti and Jos{\'{e}} I. Latorre and Juan Rojo and Maria Ubiali}, + title = {A first unbiased global {NLO} determination of parton distributions and their uncertainties}, + journal = {Nuclear Physics B} +} diff --git a/docs/source/shared/abbreviations.rst b/docs/source/shared/abbreviations.rst new file mode 100644 index 00000000..1d69fa6d --- /dev/null +++ b/docs/source/shared/abbreviations.rst @@ -0,0 +1,100 @@ +.. |EKO| replace:: + :abbr:`EKO (Evolution Kernel Operator)` + +.. |PDF| replace:: + :abbr:`PDF (Parton Distribution Function(s))` + +.. FNS +.. |FNS| replace:: + :abbr:`FNS (Flavor Number Scheme)` + +.. |FFNS| replace:: + :abbr:`FFNS (Fixed Flavor Number Scheme)` + +.. |VFNS| replace:: + :abbr:`VFNS (Variable Flavor Number Scheme)` + + +.. perturbative orders +.. |LO| replace:: + :abbr:`LO (Leading Order)` + +.. |NLO| replace:: + :abbr:`NLO (Next-to-Leading Order)` + +.. |NNLO| replace:: + :abbr:`NNLO (Next-to-Next-to-Leading Order)` + +.. |N3LO| replace:: + :abbr:`N3LO (Next-to-Next-to-Next-to-Leading Order)` + +.. Names +.. |DGLAP| replace:: + :abbr:`DGLAP (Dokshitzer-Gribov-Lipatov-Altarelli-Parisi)` + +.. data +.. |pid| replace:: + :abbr:`PID ((Monte Carlo) parton identifier)` + +.. QCD +.. |OME| replace:: + :abbr:`OME (Operator Matrix Element)` + +.. |MSbar| replace:: + :math:`\overline{MS}` + +.. |RGE| replace:: + :abbr:`RGE (Renormalization Group Equation)` + +.. |MHOU| replace:: + :abbr:`MHOU (Missing Higher Order Uncertainties)` + +.. |QCD| replace:: + :abbr:`QCD (Quantum Chromodynamics)` + +.. |QED| replace:: + :abbr:`QED (Quantum Electrodynamics)` + +.. |DIS| replace:: + :abbr:`DIS (Deep inelastic scattering)` + +.. |FK| replace:: + :abbr:`FK (Fast Kernel)` + +.. external +.. |yadism| replace:: + :yadism:`\ ` + +.. |banana| replace:: + :banana:`\ ` + +.. |pineappl| replace:: + :pineappl:`\ ` + +.. |eko| replace:: + :eko:`\ ` + + +.. |APFEL| raw:: html + + APFEL + +.. |Pegasus| raw:: html + + Pegasus + +.. |lhapdf| raw:: html + + lhapdf + +.. |QCDNUM| raw:: html + + QCDNUM + +.. |T| raw:: html + + ✓ + + +.. |API| replace:: + :abbr:`API (Application Program Interface)` diff --git a/docs/source/static/site.css b/docs/source/static/site.css new file mode 100644 index 00000000..76e1c8d2 --- /dev/null +++ b/docs/source/static/site.css @@ -0,0 +1,19 @@ +/* Fix for: https://github.com/readthedocs/sphinx_rtd_theme/issues/301 */ +/* Fix taken from: https://github.com/readthedocs/sphinx_rtd_theme/pull/383/ */ +span.eqno { + margin-left: 5px; + float: right; + /* position the number above the equation so that :hover is activated */ + z-index: 1; + position: relative; + } + + span.eqno .headerlink { + display: none; + visibility: hidden; + } + + span.eqno:hover .headerlink { + display: inline-block; + visibility: visible; + } \ No newline at end of file diff --git a/docs/source/theory/Scalevar.rst b/docs/source/theory/Scalevar.rst new file mode 100644 index 00000000..9a682ae3 --- /dev/null +++ b/docs/source/theory/Scalevar.rst @@ -0,0 +1,224 @@ +************************************************************************************ +Missing Higher Order Uncertainties (MHOU) from Scale Variations +************************************************************************************ + +The variation of the **renormalization** and **factorization** scales is one of the most used method to estimate |MHOU| in |QCD|. + +This is due to the simplicity of both their calculation and their implementation, the former given by the fact that the scale dependence +of the strong coupling :math:`\alpha_{s}` and of |PDF| is universal and the latter given by the easiness in calculating the correlations. + +However, the scale variations approach also has well known drawbacks: + +* there is no unique principle to determine the specific range of the scale variation +* it cannot deal with new singularities or color structures appearing at higher orders. + +Here we briefly summarize the aspects of the scale variations method which are related to **pineko**. For a much more exhaustive +report on how to compute scale variations and how to use them in a |PDF| fit, please refer to :cite:`NNPDF:ThUncerta`. + +Renormalization group invariance +################################ + +Considering a theoretical prediction :math:`\overline{T}(\alpha_{s}(\mu^2), \mu^2/Q^2)` with :math:`\mu^2` the *renormalization* scale and +:math:`Q^2` the typical scale of the process, denote with :math:`T(Q^2)` the same theoretical prediction evaluated at :math:`\mu^2 = Q^2`. + +We know that the |QCD| running coupling satisfies the |RGE| + +.. math:: + + \mu^2 \frac{d}{d\mu^2}\alpha_{s}(\mu^2) = \beta(\alpha_{s}(\mu^2)) + +and that an all-order prediction is independent of the renormalization scale: + +.. math:: + + \mu^2 \frac{d}{d\mu^2}\overline{T}(\alpha_{s}(\mu^2), \mu^2/Q^2) = 0. + +Then, defining :math:`\mu^2 = k Q^2`, :math:`t = \ln{(Q^2/\Lambda^2)}` and :math:`\kappa = \ln{k} = \ln{(\mu^2/Q^2)}`, we can rewrite +the RG equation as + +.. math:: + + \frac{\delta}{\delta t}\overline{T}(\alpha_{s}(t+\kappa),\kappa)\bigg|_{\kappa} + \frac{\delta}{\delta \kappa}\overline{T}(\alpha_{s}(t+\kappa),\kappa)\bigg|_{\alpha_{s}} + +which plugged in the Taylor expansion of :math:`\overline{T}(\alpha_{s},\kappa)` + +.. math:: + + \overline{T}(\alpha_{s}(t+\kappa),\kappa) = \overline{T}(\alpha_{s}(t+\kappa),0) - \kappa \frac{\delta}{\delta t}\overline{T}(\alpha_{s}(t+\kappa),0)\bigg|_{\kappa} + \dots + +allow us to determine the scale-dependent terms at any given order just from the central predictions as + +.. math:: + + \overline{T}_{\text{LO}}(\alpha_{s}(t+\kappa),\kappa) &= T_{\text{LO}}(t + \kappa), \\ + \overline{T}_{\text{NLO}}(\alpha_{s}(t+\kappa),\kappa) &= T_{\text{NLO}}(t+\kappa) - \kappa \frac{d}{dt}T_{\text{LO}}(t + \kappa), \\ + \overline{T}_{\text{NNLO}}(\alpha_{s}(t+\kappa),\kappa) &= T_{\text{NNLO}}(t+\kappa) - \kappa \frac{d}{dt}T_{\text{NLO}}(t + \kappa) + \frac{1}{2} \kappa^2 \frac{d^2}{dt^2}T_{\text{LO}}(t + \kappa). + +From the last equation is then clearly possible to estimate the |MHOU| at any given order as :math:`\Delta(t,k) = \overline{T}(\alpha_{s}(t+\kappa),\kappa) - T(t)`. However, +as previously mentioned, there is no unique principle to determine the range of the scale variations, i.e. the value of :math:`\kappa`. Usually, one varies the renormalization +scale by a factor of two, which means :math:`\kappa \in [-\ln{4}, \ln{4}]`. + +Since we are usually interested in processes with one or more hadrons in the initial state, for which the cross-section is factorized into a partonic part and a |PDF| +(or luminosity), we must deal with two sources of independent |MHOU|: + +* The uncertainties coming from the expansion of the partonic cross-sections +* The uncertainties coming from the expansion of the anomalous dimensions which determine the perturbative evolution of the |PDF|. + +In the next section we will consider both the cases and we will provide the final equations for both *electroproduction* (i.e. with one incoming hadron) +and *hadronic processes* (i.e. with two incoming hadron). In the anomalous dimensions case, we will also provide three different procedure (*schemes*) to estimate them. + +Scale variation for partonic cross-sections +########################################### + +Electroproduction +================= + +Consider the case of electroproduction, such as |DIS|, with the scale-dependent structure function given by + +.. math:: + + \overline{F}(t,\kappa) = \overline{C}(\alpha_{s}(t+\kappa),\kappa) \otimes f(t). + +Since we are not varying the scale at which the |PDF| is evaluated, the RG invariace of the structure function implies the RG invariance +of the coefficients function :math:`\overline{C}(\alpha_{s}(t+\kappa),\kappa)`. Exploiting this property, is then possible to obtain: + +.. math:: + + \overline{C}(\alpha_{s}(t+\kappa),\kappa) = c_{0} + \alpha_{s}(t+\kappa)c_{1} + \alpha_{s}^{2}(t+\kappa)(c2 - \kappa \beta_{0} c_{1}) + \dots + +where :math:`\beta_{0}` is the first term of the perturbative expansion of the beta function and :math:`c_{i}` are the coefficients of +the perturbative expansion of the scale-independent coefficients function, i.e. + +.. math:: + + C(t) = c_{0} + \alpha_{s}(t)c_{1} + \alpha_{s}^{2}(t)c_{2} + \dots + +Note that convoluting the scale-varied coefficients function with the |PDF| lead to an expression which has the same structure of the +scale-independent expression. This means evaluating the scale-varied structure function is very straightforward since all that is +necessary is to change the coefficients in the perturbative expansion at the central scale. + + +Hadronic processes +================== + +Let's now consider an hadronic process with scale-varied cross-section given by + +.. math:: + + \overline{\Sigma}(t,\kappa) = \overline{H}(\alpha_{s}(t+\kappa), \kappa) \otimes (f(t) \otimes f(t) ). + +With the same procedure adopted in the electroproduction case, we can get + +.. math:: + + \overline{H}(\alpha_{s}(t+\kappa),\kappa) = \alpha_{s}^{n}h_{0} + \alpha_{s}^{n+1}(h1 - \kappa n \beta{0} h_{0}) + \dots + +where this time the perturbative expansion of :math:`\overline{H}(\alpha_{s}(t+\kappa),\kappa)` starts at :math:`\mathcal{O}(\alpha_{s}^{n})` rather +than :math:`\mathcal{O}(\alpha_{s}^{0})`. + +Scale variation for |PDF| evolution +########################################### + +A completely independent source of |MHOU| arises from the truncation of the perturbative expansion of the anomalous dimensions governing the evolution +of the |PDF|. Again, this uncertainties can be estimated trough scale variation but, in this case, there are three equivalent ways in which it can be +performed: at the level of anomalous dimensions, at |PDF| level or even at the level of the partonic cross-sections. We will address these different +methods as *schemes*. + +Consider a |PDF| evaluated at the scale :math:`\mu`, :math:`f(\mu^2)`. Neglecting all the flavor indices and assuming a Mellin space formalism, the scale +dependence of the |PDF| is fixed by + +.. math:: + + f(\mu^2) = \exp{\bigg(\int^{\mu^2}\frac{d\mu'^2}{\mu'^2}\gamma(\alpha_{s}(\mu'^2))\bigg)}f_{0} + +where the anomalous dimensions admit the perturbative expansion + +.. math:: + + \gamma(t) = \alpha_{s}(t)\gamma_{0} + \alpha_{s}^{2}(t)\gamma_{1} + \dots + +With the same definition of the previous part we can define the scale-dependent anomalous dimensions as + +.. math:: + + \overline{\gamma}(\alpha_{s}(t), \kappa) = \gamma(t) - \kappa \frac{d}{dt}\gamma(t) + \dots + +so that their perturbative expansion is + +.. math:: + :label: schemeA + + \overline{\gamma}(\alpha_{s}(t+\kappa), \kappa) = \alpha_{s}(t+\kappa)\gamma_{0} + \alpha_{s}^2 (t+\kappa)(\gamma{1} - \kappa \beta_{0}\gamma_{0}) + \dots + +Then, using this expression, one can estimate the |MHOU| coming from the perturbative expansion of the anomalous dimensions (this way of doing it will be later +called *scheme A*). + +However, the same result can be obtained by scale variation at the |PDF| level. In fact, inserting the last equation in the |PDF| evolution equation we get + +.. math:: + + & \exp{\bigg(\int^{t}dt'\overline{\gamma}(\alpha_{s}(t' + \kappa), \kappa)\bigg)} = \exp{\bigg(\int^{t+\kappa}dt'\overline{\gamma}(\alpha_{s}(t'), \kappa)\bigg)} \\ + &= \exp{\bigg(\bigg[\int^{t+\kappa}dt'\gamma(t')\bigg] - \kappa\gamma(t+\kappa) + \frac{1}{2}\kappa^2\frac{d}{dt}\gamma(t+\kappa) + \dots\bigg)} \\ + &= \bigg[1 - \kappa\gamma(t+\kappa) + \frac{1}{2}\kappa^2(\gamma^2(t+\kappa)+\frac{d}{dt}\gamma(t+\kappa)) + \dots \bigg]\exp{\bigg(\int^{t+\kappa}dt'\gamma(t')\bigg)}, + +that can be used to obtain + +.. math:: + :label: schemeB + + \overline{f}(\alpha_{s}(t+\kappa), \kappa) = [1 - \kappa \gamma(t+\kappa) + \frac{1}{2}\kappa^2(\gamma^2(t+k) + \frac{d}{dt}\gamma(t+\kappa)) + \dots]f(t+\kappa) + +which is the perturbative expansion of the scale-varied |PDF| defined as + +.. math:: + + \overline{f}(\alpha_{s}(t+\kappa), \kappa) = \exp{\bigg(\int^{t}dt' \overline{\gamma}(\alpha_{s}(t'+\kappa),\kappa)\bigg)}f_{0}. + +Equation :eq:`schemeB` provides us a way to estimate the |MHOU| coming from the anomalous dimensions at the |PDF| level (this way of doing it will be later +called *scheme B*). Moreover, it indicates that the :math:`\kappa` dependence can be factorized out of the PDF. Therefore we have yet another way to +estimate this |MHOU| just including this factorized terms in the coefficients functions (this way of doing it will be later +called *scheme C*). + +Let's for example consider electroproduction, the scale-varied structure function assumes the form + +.. math:: + :label: schemeC + + \hat{F}(t,\kappa) &= C(t)\overline{f}(\alpha_{s}(t+\kappa),\kappa) \\ + &= C(t)[1-\kappa\gamma(t+\kappa) + \frac{1}{2}\kappa^2(\gamma^2(t+\kappa)+\frac{d}{dt}\gamma(t+\kappa))+\dots]f(t+\kappa) \\ + &= \hat{C}(t,\kappa)f(t+\kappa) + +where the last line is the definition of the scale-varied coefficients functions :math:`\hat{C}(t,\kappa)`. Note that they are different from the +:math:`\overline{C}(t+\kappa,\kappa)` because, while the latter are obtained from the variation of the renormalization scale of the hard coefficients +functions (and thus they estimate the |MHOU| coming from the perturbative expansion of the coefficients functions), the former are obtained from the +variation of the renormalization scale inside the anomalous dimensions (and thus they estimate completely different |MHOU|, i.e. the ones coming from +the perturbative expansion of the anomalous dimensions). + +Using the fact that + +.. math:: + + \frac{d}{dt}\gamma(\alpha_{s}) = \beta(\alpha_{s})\frac{d\gamma}{d\alpha_{s}} + +we can obtain the explicit perturbative expansion + + .. math:: + + \hat{C}(t,\kappa) = c_{0} + \alpha_{s}(t)(c_{1}-\kappa\gamma_{0})+\alpha_{s}^{2}(t)(c_{2}-\kappa(\gamma_{0}c_{1} + \gamma{1}c_{0}) + \frac{1}{2}\kappa^2 + \gamma_{0}(\gamma_{0}+\beta_{0})c_{0})+ \dots + +Schemes +======= + +Let's now summarize the three different ways of estimating the |MHOU| coming from the anomalous dimensions + +* **Scheme A:** The renormalization scale of the anomalous dimensions is varied directly, as in :eq:`schemeA`, obtaining their scale-varied version. Then, it is used to compute the evolution operator which will produce the scale-varied PDF. However using this scheme requires refitting the |PDF| as the scale is varied. + +* **Scheme B:** The scale-dependence of the anomalous dimensions is factored out of the |PDF|, as in :eq:`schemeB`, in such a way the scale-varied |PDF| is simply obtained by the product of the central |PDF| evolved to the varied scale (:math:`t+\kappa`) with a term which is function of the central anomalous dimensions computed in the varied scale. In this case there is no need to refit the initial |PDF|. Moreover, this scheme is the most suited one for |VFNS|, since the |MHOU| in the |PDF| with different numbers of active flavors can each be estimated separately. + +* **Scheme C:** The factored scale-dependence of the anomalous dimensions is included in the definition of scale-varied coefficients functions, as in the last line of :eq:`schemeC`. Then, a scale-varied observable is computed trough the convolution of these scale-varied coefficients functions with the |PDF| evolved to the varied scale :math:`t+\kappa`. + +Note that, even if these schemes are formally equivalent, they can differ by subleading terms depending on the convention used to truncate the perturbative expansion. +In fact, in **scheme A** some higher order terms of the anomalous dimensions expansion can be retained according to the kind of solution adopted for the evolution equation. +In **scheme B** the exponential has been expanded so that it corresponds to a linearized solution of the evolution equations and in **scheme C** some terms coming from the +cross-expansion of the coefficients functions and the linearized solution of the evolution equations have been dropped. diff --git a/docs/source/theory/fktables.rst b/docs/source/theory/fktables.rst new file mode 100644 index 00000000..a92e10d9 --- /dev/null +++ b/docs/source/theory/fktables.rst @@ -0,0 +1,63 @@ +============================================================ +Fast Kernel (FK) tables +============================================================ + +The direct calculation of observables during a |PDF| fit is not very practical +since it requires first solving the |DGLAP| evolution equation for each new boundary +condition at the initial scale :math:`Q_0` and then convoluting with the coefficient +functions of the partonic cross-sections. + +For this reason, we adopt the |FK| tables method :cite:`Ball:2010` which is presented in this section. + +In the framework of collinear |QCD| factorization cross section, such as the :math:`F_2` |DIS| structure function, +can be decomposed in terms of hard-scattering coefficient functions and PDFs as, + +.. math:: + + F_2(x,Q^2) &= \mathbf{C}(Q^2) \otimes \mathbf{f}(Q^2) \\ + &= \mathbf{C}(Q^2) \otimes \mathbf{E}(Q^2 \leftarrow Q_0^2) \otimes \mathbf{f}(Q_0^2), + + +where :math:`\mathbf{C}(Q^2)` are the process-dependent coefficient functions which +can be computed perturbatively as an expansion in the |QCD| and |QED| +couplings, :math:`\mathbf{E}(Q^2 \leftarrow Q_0^2)` is an evolution operator, determined by the +solutions of the |DGLAP| equations, which evolves the |PDF| from the initial +parameterization scale :math:`Q_0^2` up to the hard-scattering scale :math:`Q^2`, +:math:`\mathbf{f}(Q^2_0)` are the |PDF| at the parameterization scale, and +:math:`\otimes` denotes the Mellin convolution. + +In the above equation (and in all equations from now on), the sum over flavors (running over +the contributing quarks and anti-quarks, as well as over the gluon) is indicated by the bold font. + +.. In the same way, a hadronic cross-section :math:`\sigma` can be written as, + +.. .. math:: + +.. \sigma(Q^2) &= \mathbf{\hat{\sigma}}(Q^2) \otimes_{1} \mathbf{f}_1(Q^2) \otimes_2 \mathbf{f}_2(Q^2) \\ +.. &= \hat{\sigma}(x_{1},x_{2},Q^2) \otimes \mathbf{\mathcal{L}}(x_{1},x_{2},Q^2) \\ +.. &= \hat{\sigma}(x_{1},x_{2},Q^2) \otimes \mathbf{\text{E}(Q^2 \leftarrow Q_0^2) \otimes \mathcal{L}(x_{1}.x_{2},Q_0^2), + +.. where :math:`\hat{\sigma}(x_{1},x_{2},Q^2)` are the process-dependent partonic cross-sections and +.. :math:`\mathcal{L} = f \otimes f` is called luminosity. + +To evaluate the observable in a computationally more efficient way, it is better +to precompute all the perturbative information: +for the partonic coefficient functions :math:`\mathbf{C}` we use |pineappl| grids and +for the evolution operators :math:`\mathbf{E}` we use |eko|. + +Finally, we can arrive at + +.. math:: + + \begin{align} + F_2(x,Q^2) &= \sum_{\alpha} \mathbf{FK}(x,x_{\alpha},Q^2\leftarrow Q^2_0) \cdot \mathbf{f}(x_{\alpha},Q_0^2) + \end{align} + +where all of the information about the partonic cross-sections and the |DGLAP| +evolution operators is now encoded into the so-called |FK| table :math:`\mathbf{FK}`. + +.. Doing the same for the hadronic cross-sections lead to + +.. .. math:: + +.. \sigma(Q^2) = \sum_{\alpha}^{n_x} \text{FK}_{\alpha \beta}(x_{\alpha}, x_{\beta},Q^2,Q^2_0) \, \mathcal{L}(x_{\alpha}, x_{\beta},Q_0^2). diff --git a/docs/source/zzz-refs.rst b/docs/source/zzz-refs.rst new file mode 100644 index 00000000..c52f740b --- /dev/null +++ b/docs/source/zzz-refs.rst @@ -0,0 +1,7 @@ +References +---------- + +.. bibliography:: refs.bib + :all: + +.. see also https://sphinxcontrib-bibtex.readthedocs.io/en/latest/usage.html#unresolved-citations-across-documents \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 0949882c..478dd0c4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -6,6 +6,14 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "alabaster" +version = "0.7.12" +description = "A configurable sidebar-enabled Sphinx theme" +category = "main" +optional = false +python-versions = "*" + [[package]] name = "appdirs" version = "1.4.4" @@ -16,7 +24,7 @@ python-versions = "*" [[package]] name = "appnope" -version = "0.1.2" +version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" category = "dev" optional = false @@ -24,7 +32,7 @@ python-versions = "*" [[package]] name = "astroid" -version = "2.11.2" +version = "2.11.5" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false @@ -57,6 +65,17 @@ docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] +[[package]] +name = "babel" +version = "2.10.1" +description = "Internationalization utilities" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +pytz = ">=2015.7" + [[package]] name = "backcall" version = "0.2.0" @@ -65,9 +84,28 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "certifi" +version = "2022.5.18.1" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "charset-normalizer" +version = "2.0.12" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." +category = "main" +optional = false +python-versions = ">=3.5.0" + +[package.extras] +unicode_backport = ["unicodedata2"] + [[package]] name = "click" -version = "8.1.0" +version = "8.1.3" description = "Composable command line interface toolkit" category = "main" optional = false @@ -97,7 +135,7 @@ test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] [[package]] name = "coverage" -version = "6.3.2" +version = "6.4" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -116,15 +154,23 @@ python-versions = ">=3.5" [[package]] name = "dill" -version = "0.3.4" +version = "0.3.5.1" description = "serialize all of python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*" [package.extras] graph = ["objgraph (>=1.7.2)"] +[[package]] +name = "docutils" +version = "0.17.1" +description = "Docutils -- Python Documentation Utilities" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + [[package]] name = "eko" version = "0.8.5" @@ -156,6 +202,38 @@ python-versions = "*" pyreadline = {version = "*", markers = "platform_system == \"Windows\""} pyrepl = ">=0.8.2" +[[package]] +name = "idna" +version = "3.3" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "main" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "imagesize" +version = "1.3.0" +description = "Getting image size from png/jpeg/jpeg2000/gif file" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "importlib-metadata" +version = "4.11.4" +description = "Read metadata from Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +zipp = ">=0.5" + +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] +perf = ["ipython"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] + [[package]] name = "iniconfig" version = "1.1.1" @@ -166,7 +244,7 @@ python-versions = "*" [[package]] name = "ipython" -version = "7.32.0" +version = "7.33.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -225,6 +303,31 @@ parso = ">=0.8.0,<0.9.0" qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] +[[package]] +name = "jinja2" +version = "3.1.2" +description = "A very fast and expressive template engine." +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +MarkupSafe = ">=2.0" + +[package.extras] +i18n = ["Babel (>=2.7)"] + +[[package]] +name = "latexcodec" +version = "2.0.1" +description = "A lexer and codec to work with LaTeX code in Python." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +six = ">=1.4.1" + [[package]] name = "lazy-object-proxy" version = "1.7.1" @@ -235,7 +338,7 @@ python-versions = ">=3.6" [[package]] name = "llvmlite" -version = "0.38.0" +version = "0.38.1" description = "lightweight wrapper around basic LLVM functionality" category = "main" optional = false @@ -254,6 +357,14 @@ docs = ["sphinx (>=1.6.0)", "sphinx-bootstrap-theme"] flake8 = ["flake8"] tests = ["pytest (!=3.3.0)", "psutil", "pytest-cov"] +[[package]] +name = "markupsafe" +version = "2.1.1" +description = "Safely add untrusted strings to HTML/XML markup." +category = "main" +optional = false +python-versions = ">=3.7" + [[package]] name = "matplotlib-inline" version = "0.1.3" @@ -275,7 +386,7 @@ python-versions = ">=3.6" [[package]] name = "numba" -version = "0.55.1" +version = "0.55.2" description = "compiling Python code using LLVM" category = "main" optional = false @@ -283,21 +394,21 @@ python-versions = ">=3.7,<3.11" [package.dependencies] llvmlite = ">=0.38.0rc1,<0.39" -numpy = ">=1.18,<1.22" +numpy = ">=1.18,<1.23" [[package]] name = "numpy" -version = "1.21.5" +version = "1.22.4" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false -python-versions = ">=3.7,<3.11" +python-versions = ">=3.8" [[package]] name = "packaging" version = "21.3" description = "Core utilities for Python packages" -category = "dev" +category = "main" optional = false python-versions = ">=3.6" @@ -306,7 +417,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" -version = "1.4.1" +version = "1.4.2" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false @@ -386,15 +497,15 @@ numpy = ">=1.16.0,<2.0.0" [[package]] name = "platformdirs" -version = "2.5.1" +version = "2.5.2" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false python-versions = ">=3.7" [package.extras] -docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] -test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] +test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] [[package]] name = "pluggy" @@ -410,7 +521,7 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "prompt-toolkit" -version = "3.0.28" +version = "3.0.29" description = "Library for building powerful interactive command lines in Python" category = "dev" optional = false @@ -435,24 +546,52 @@ category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +[[package]] +name = "pybtex" +version = "0.24.0" +description = "A BibTeX-compatible bibliography processor in Python" +category = "main" +optional = false +python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*" + +[package.dependencies] +latexcodec = ">=1.0.4" +PyYAML = ">=3.01" +six = "*" + +[package.extras] +test = ["pytest"] + +[[package]] +name = "pybtex-docutils" +version = "1.0.2" +description = "A docutils backend for pybtex." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +docutils = ">=0.8" +pybtex = ">=0.16" + [[package]] name = "pygments" -version = "2.11.2" +version = "2.12.0" description = "Pygments is a syntax highlighting package written in Python." category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" [[package]] name = "pylint" -version = "2.13.3" +version = "2.13.9" description = "python code static checker" category = "dev" optional = false python-versions = ">=3.6.2" [package.dependencies] -astroid = ">=2.11.2,<=2.12.0-dev0" +astroid = ">=2.11.5,<=2.12.0-dev0" colorama = {version = "*", markers = "sys_platform == \"win32\""} dill = ">=0.2" isort = ">=4.2.5,<6" @@ -466,14 +605,14 @@ testutil = ["gitpython (>3)"] [[package]] name = "pyparsing" -version = "3.0.7" -description = "Python parsing module" -category = "dev" +version = "3.0.9" +description = "pyparsing module - Classes and methods to define and execute parsing grammars" +category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.6.8" [package.extras] -diagrams = ["jinja2", "railroad-diagrams"] +diagrams = ["railroad-diagrams", "jinja2"] [[package]] name = "pyreadline" @@ -566,6 +705,24 @@ category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "requests" +version = "2.27.1" +description = "Python HTTP for Humans." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" + +[package.dependencies] +certifi = ">=2017.4.17" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} +urllib3 = ">=1.21.1,<1.27" + +[package.extras] +socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] + [[package]] name = "rich" version = "11.2.0" @@ -584,7 +741,7 @@ jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"] [[package]] name = "scipy" -version = "1.8.0" +version = "1.8.1" description = "SciPy: Scientific Library for Python" category = "main" optional = false @@ -601,6 +758,146 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "snowballstemmer" +version = "2.2.0" +description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "sphinx" +version = "4.5.0" +description = "Python documentation generator" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +alabaster = ">=0.7,<0.8" +babel = ">=1.3" +colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} +docutils = ">=0.14,<0.18" +imagesize = "*" +importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} +Jinja2 = ">=2.3" +packaging = "*" +Pygments = ">=2.0" +requests = ">=2.5.0" +snowballstemmer = ">=1.1" +sphinxcontrib-applehelp = "*" +sphinxcontrib-devhelp = "*" +sphinxcontrib-htmlhelp = ">=2.0.0" +sphinxcontrib-jsmath = "*" +sphinxcontrib-qthelp = "*" +sphinxcontrib-serializinghtml = ">=1.1.5" + +[package.extras] +docs = ["sphinxcontrib-websupport"] +lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"] +test = ["pytest", "pytest-cov", "html5lib", "cython", 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["sphinx", "sphinx-rtd-theme", "sphinxcontrib-bibtex"] [tool.poetry.scripts] pineko = "pineko:command" @@ -55,6 +69,11 @@ test = "pytest tests" lint = "pylint src/**/*.py -E" lint-warnings = "pylint src/**/*.py --exit-zero" pineko = "pineko" +docs = { "shell" = "cd docs; make html" } +docs-view = { "shell" = "cd docs; make view" } +docs-server = { "shell" = "cd docs; make server" } +docs-clean = { "shell" = "cd docs; make clean" } +docs-cleanall = { "shell" = "cd docs; make cleanall" } [tool.poetry-dynamic-versioning] enable = true