From f5b1ad66672d46c73c4e347318c73612ab53de5a Mon Sep 17 00:00:00 2001 From: Mike Henry <11765982+mikemhenry@users.noreply.github.com> Date: Thu, 16 May 2024 09:42:38 -0700 Subject: [PATCH 1/3] see if notebooks will run on osx-arm64 --- .github/workflows/CI.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index a355f34..cad067d 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -31,7 +31,7 @@ jobs: matrix: # Note: we temporarily pin to macos-12 to avoid compatibility issues # between AT22+ and macos-13+ runners - os: [ubuntu-latest] + os: ["ubuntu-latest", "macos-latest"] python-version: ["3.10"] steps: From a363518dc99dc27ffe041af2cdd64f2f92ed1325 Mon Sep 17 00:00:00 2001 From: Mike Henry <11765982+mikemhenry@users.noreply.github.com> Date: Thu, 16 May 2024 09:54:29 -0700 Subject: [PATCH 2/3] use micromamba list instead of conda list --- .github/workflows/CI.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index cad067d..8105918 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -60,8 +60,8 @@ jobs: - name: Environment Information run: | - conda info - conda list + micromamba info + micromamba list - name: Run example notebooks run: | From ad76423d01f8e7c5f865b388c996b187f2a38d04 Mon Sep 17 00:00:00 2001 From: Mike Henry <11765982+mikemhenry@users.noreply.github.com> Date: Fri, 17 May 2024 11:22:07 -0700 Subject: [PATCH 3/3] bump timeout time --- .github/workflows/CI.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index 8105918..0669a21 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -65,4 +65,4 @@ jobs: - name: Run example notebooks run: | - python -m pytest -v setup/ showcase/ cookbook/ openmm_rbfe/ networks/ --nbval-lax -n auto --dist loadscope + python -m pytest -v setup/ showcase/ cookbook/ openmm_rbfe/ networks/ --nbval-lax --nbval-cell-timeout=3000 -n auto --dist loadscope