diff --git a/openfecli/commands/plan_rbfe_network.py b/openfecli/commands/plan_rbfe_network.py index 951cde2c1..c7b5d12e2 100644 --- a/openfecli/commands/plan_rbfe_network.py +++ b/openfecli/commands/plan_rbfe_network.py @@ -167,8 +167,8 @@ def plan_rbfe_network( By default, this tool makes the following choices: - * Atom mappings performed by LOMAP, with settings max3d=1.0 and - element_change=False + * Atom mappings performed by LOMAP, with settings max3d=1.0, threed=True, shift=False and + element_change=True * Minimal spanning network as the network planner, with LOMAP default score as the weight function * Water as solvent, with NaCl counter ions at 0.15 M concentration.