diff --git a/docs/guide/setup/creating_ligand_networks.rst b/docs/guide/setup/creating_ligand_networks.rst index c01e9b979..5f6d96ff8 100644 --- a/docs/guide/setup/creating_ligand_networks.rst +++ b/docs/guide/setup/creating_ligand_networks.rst @@ -8,9 +8,8 @@ For example, a :class:`.LigandNetwork` with drug candidates as nodes can be used **openfe** includes an interface to common :any:`Ligand Network Planners`, which are implemented in OpenFE's `konnektor `_ package. (See `konnektor's documentation `_ for more information on network generators.) -Because each edge in a :class:`.LigandNetwork` is a :class:`.LigandAtomMapping`, each edge can be assigned a score that indicates the mapping's quality. -Some network generators use these scores to construct more efficient network topologies. - +A :class:`.LigandNetwork` is constructed from :class:`.SmallMoleculeComponent`, which represent the nodes and optionally :class:`.LigandAtomMapping`, which represent the edges of the network. +A :class:`.LigandAtomMapping` can have a :ref:`score associated with the mapping ` which can be used by some network generators to construct more efficient network topologies. Below is an example of a ``LigandNetwork`` with scores assigned to each atom mapping: