From 4d89402ec91a06afddfb3dc91cb061e27c07e641 Mon Sep 17 00:00:00 2001
From: Behrooz <3968947+behxyz@users.noreply.github.com>
Date: Wed, 31 Mar 2021 15:56:48 -0400
Subject: [PATCH] Update pathology unittests

Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>
---
 tests/test_cuimage_reader.py               |  4 +--
 tests/test_masked_inference_wsi_dataset.py | 38 ++++++++++++----------
 tests/test_openslide_reader.py             |  2 +-
 tests/test_patch_wsi_dataset.py            |  2 +-
 tests/test_smartcache_patch_wsi_dataset.py |  2 +-
 5 files changed, 25 insertions(+), 23 deletions(-)

diff --git a/tests/test_cuimage_reader.py b/tests/test_cuimage_reader.py
index 1b0293f159..c096bad0c2 100644
--- a/tests/test_cuimage_reader.py
+++ b/tests/test_cuimage_reader.py
@@ -14,7 +14,7 @@
 PILImage, has_pil = optional_import("PIL.Image")
 
 FILE_URL = "http://openslide.cs.cmu.edu/download/openslide-testdata/Generic-TIFF/CMU-1.tiff"
-FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", os.path.basename(FILE_URL))
+FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", "temp_" + os.path.basename(FILE_URL))
 
 HEIGHT = 32914
 WIDTH = 46000
@@ -105,7 +105,7 @@ def test_read_rgba(self, img_expected):
         image = {}
         reader = WSIReader("cuCIM")
         for mode in ["RGB", "RGBA"]:
-            file_path = self.create_rgba_image(img_expected, "test_cu_tiff_image", mode=mode)
+            file_path = self.create_rgba_image(img_expected, "temp_cu_tiff_image", mode=mode)
             img_obj = reader.read(file_path)
             image[mode], _ = reader.get_data(img_obj)
 
diff --git a/tests/test_masked_inference_wsi_dataset.py b/tests/test_masked_inference_wsi_dataset.py
index 7c8a815c2e..88af8c05c0 100644
--- a/tests/test_masked_inference_wsi_dataset.py
+++ b/tests/test_masked_inference_wsi_dataset.py
@@ -15,11 +15,13 @@
 _, has_osl = optional_import("openslide")
 
 FILE_URL = "http://openslide.cs.cmu.edu/download/openslide-testdata/Generic-TIFF/CMU-1.tiff"
-FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", os.path.basename(FILE_URL))
+base_name, extension = os.path.splitext(os.path.basename(FILE_URL))
+FILE_NAME = "temp_" + base_name
+FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", FILE_NAME + extension)
 
-MASK1 = os.path.join(os.path.dirname(__file__), "testing_data", "tissue_mask1.npy")
-MASK2 = os.path.join(os.path.dirname(__file__), "testing_data", "tissue_mask2.npy")
-MASK4 = os.path.join(os.path.dirname(__file__), "testing_data", "tissue_mask4.npy")
+MASK1 = os.path.join(os.path.dirname(__file__), "testing_data", "temp_tissue_mask1.npy")
+MASK2 = os.path.join(os.path.dirname(__file__), "testing_data", "temp_tissue_mask2.npy")
+MASK4 = os.path.join(os.path.dirname(__file__), "testing_data", "temp_tissue_mask4.npy")
 
 HEIGHT = 32914
 WIDTH = 46000
@@ -47,7 +49,7 @@ def prepare_data():
     [
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
     ],
@@ -62,12 +64,12 @@ def prepare_data():
     [
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [101, 100],
         },
     ],
@@ -82,22 +84,22 @@ def prepare_data():
     [
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 101],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [101, 100],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [101, 101],
         },
     ],
@@ -121,7 +123,7 @@ def prepare_data():
                 ],
                 dtype=np.uint8,
             ),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
     ],
@@ -139,17 +141,17 @@ def prepare_data():
     [
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [101, 100],
         },
     ],
@@ -167,7 +169,7 @@ def prepare_data():
     [
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
     ],
@@ -182,12 +184,12 @@ def prepare_data():
     [
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [100, 100],
         },
         {
             "image": np.array([[[243]], [[243]], [[243]]], dtype=np.uint8),
-            "name": "CMU-1",
+            "name": FILE_NAME,
             "mask_location": [101, 100],
         },
     ],
diff --git a/tests/test_openslide_reader.py b/tests/test_openslide_reader.py
index ca50cec4de..e005dbd1c4 100644
--- a/tests/test_openslide_reader.py
+++ b/tests/test_openslide_reader.py
@@ -14,7 +14,7 @@
 
 
 FILE_URL = "http://openslide.cs.cmu.edu/download/openslide-testdata/Generic-TIFF/CMU-1.tiff"
-FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", os.path.basename(FILE_URL))
+FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", "temp_" + os.path.basename(FILE_URL))
 
 HEIGHT = 32914
 WIDTH = 46000
diff --git a/tests/test_patch_wsi_dataset.py b/tests/test_patch_wsi_dataset.py
index d030671d06..c4a94a60c4 100644
--- a/tests/test_patch_wsi_dataset.py
+++ b/tests/test_patch_wsi_dataset.py
@@ -14,7 +14,7 @@
 _, has_osl = optional_import("openslide")
 
 FILE_URL = "http://openslide.cs.cmu.edu/download/openslide-testdata/Generic-TIFF/CMU-1.tiff"
-FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", os.path.basename(FILE_URL))
+FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", "temp_" + os.path.basename(FILE_URL))
 
 TEST_CASE_0 = [
     {
diff --git a/tests/test_smartcache_patch_wsi_dataset.py b/tests/test_smartcache_patch_wsi_dataset.py
index a7c90b5205..d7c2ce5bd1 100644
--- a/tests/test_smartcache_patch_wsi_dataset.py
+++ b/tests/test_smartcache_patch_wsi_dataset.py
@@ -13,7 +13,7 @@
 _, has_cim = optional_import("cucim")
 
 FILE_URL = "http://openslide.cs.cmu.edu/download/openslide-testdata/Generic-TIFF/CMU-1.tiff"
-FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", os.path.basename(FILE_URL))
+FILE_PATH = os.path.join(os.path.dirname(__file__), "testing_data", "temp_" + os.path.basename(FILE_URL))
 
 TEST_CASE_0 = [
     {