From af83ef7f718b1500e11baca46458399a0e0089bd Mon Sep 17 00:00:00 2001 From: Yiheng Wang Date: Mon, 26 Dec 2022 13:02:32 +0800 Subject: [PATCH 01/10] fix issue on windows Signed-off-by: Yiheng Wang --- monai/bundle/scripts.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/monai/bundle/scripts.py b/monai/bundle/scripts.py index b625578049..4b3e587ffe 100644 --- a/monai/bundle/scripts.py +++ b/monai/bundle/scripts.py @@ -182,7 +182,7 @@ def _get_latest_bundle_version(source: str, name: str, repo: str): return None elif source == "github": repo_owner, repo_name, tag_name = repo.split("/") - return get_bundle_versions(name, repo=os.path.join(repo_owner, repo_name), tag=tag_name)["latest_version"] + return get_bundle_versions(name, repo=f"{repo_owner}/{repo_name}", tag=tag_name)["latest_version"] else: raise ValueError(f"To get the latest bundle version, source should be 'github' or 'ngc', got {source}.") From e15e47e7302b01283fd0a3e9aa7515577e1f4bfa Mon Sep 17 00:00:00 2001 From: Yiheng Wang Date: Fri, 30 Dec 2022 14:13:13 +0800 Subject: [PATCH 02/10] remove skip windows Signed-off-by: Yiheng Wang --- tests/test_bundle_download.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/test_bundle_download.py b/tests/test_bundle_download.py index 09cd0128f9..be1e82724b 100644 --- a/tests/test_bundle_download.py +++ b/tests/test_bundle_download.py @@ -58,7 +58,6 @@ ] -@skip_if_windows class TestDownload(unittest.TestCase): @parameterized.expand([TEST_CASE_1, TEST_CASE_2]) @skip_if_quick From 742731d0af7d2b2c3b30177a816dc174b30add42 Mon Sep 17 00:00:00 2001 From: Yiheng Wang Date: Fri, 30 Dec 2022 15:48:00 +0800 Subject: [PATCH 03/10] avoid using incompatible Sphinx 6.0.0 Signed-off-by: Yiheng Wang --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index cb28412ad9..a85e3152db 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -9,7 +9,7 @@ scikit-image>=0.14.2 tensorboard commonmark==0.9.1 recommonmark==0.6.0 -Sphinx +Sphinx==5.3.0 pydata-sphinx-theme sphinxcontrib-applehelp sphinxcontrib-devhelp From 1c9ddf287510d330e70fb8f55c0e13191ee2f14d Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Fri, 30 Dec 2022 07:51:28 +0000 Subject: [PATCH 04/10] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- tests/test_bundle_download.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests/test_bundle_download.py b/tests/test_bundle_download.py index be1e82724b..12f15d3b41 100644 --- a/tests/test_bundle_download.py +++ b/tests/test_bundle_download.py @@ -26,7 +26,6 @@ command_line_tests, skip_if_downloading_fails, skip_if_quick, - skip_if_windows, ) TEST_CASE_1 = ["test_bundle", None] From 619fe99df308e5c23c52f89406a83cb01a0fb862 Mon Sep 17 00:00:00 2001 From: Yiheng Wang Date: Fri, 30 Dec 2022 15:55:06 +0800 Subject: [PATCH 05/10] revert download changes Signed-off-by: Yiheng Wang --- monai/bundle/scripts.py | 2 +- tests/test_bundle_download.py | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/monai/bundle/scripts.py b/monai/bundle/scripts.py index 4b3e587ffe..aa0772c547 100644 --- a/monai/bundle/scripts.py +++ b/monai/bundle/scripts.py @@ -182,7 +182,7 @@ def _get_latest_bundle_version(source: str, name: str, repo: str): return None elif source == "github": repo_owner, repo_name, tag_name = repo.split("/") - return get_bundle_versions(name, repo=f"{repo_owner}/{repo_name}", tag=tag_name)["latest_version"] + get_bundle_versions(name, repo=os.path.join(repo_owner, repo_name), tag=tag_name)["latest_version"] else: raise ValueError(f"To get the latest bundle version, source should be 'github' or 'ngc', got {source}.") diff --git a/tests/test_bundle_download.py b/tests/test_bundle_download.py index 12f15d3b41..09cd0128f9 100644 --- a/tests/test_bundle_download.py +++ b/tests/test_bundle_download.py @@ -26,6 +26,7 @@ command_line_tests, skip_if_downloading_fails, skip_if_quick, + skip_if_windows, ) TEST_CASE_1 = ["test_bundle", None] @@ -57,6 +58,7 @@ ] +@skip_if_windows class TestDownload(unittest.TestCase): @parameterized.expand([TEST_CASE_1, TEST_CASE_2]) @skip_if_quick From 23e5e8b36781ddba449007086237a4de0178bccc Mon Sep 17 00:00:00 2001 From: Yiheng Wang Date: Fri, 30 Dec 2022 15:55:34 +0800 Subject: [PATCH 06/10] revert download changes Signed-off-by: Yiheng Wang --- monai/bundle/scripts.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/monai/bundle/scripts.py b/monai/bundle/scripts.py index aa0772c547..b625578049 100644 --- a/monai/bundle/scripts.py +++ b/monai/bundle/scripts.py @@ -182,7 +182,7 @@ def _get_latest_bundle_version(source: str, name: str, repo: str): return None elif source == "github": repo_owner, repo_name, tag_name = repo.split("/") - get_bundle_versions(name, repo=os.path.join(repo_owner, repo_name), tag=tag_name)["latest_version"] + return get_bundle_versions(name, repo=os.path.join(repo_owner, repo_name), tag=tag_name)["latest_version"] else: raise ValueError(f"To get the latest bundle version, source should be 'github' or 'ngc', got {source}.") 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docs/requirements.txt | 2 +- docs/source/conf.py | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index a85e3152db..cb28412ad9 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -9,7 +9,7 @@ scikit-image>=0.14.2 tensorboard commonmark==0.9.1 recommonmark==0.6.0 -Sphinx==5.3.0 +Sphinx pydata-sphinx-theme sphinxcontrib-applehelp sphinxcontrib-devhelp diff --git a/docs/source/conf.py b/docs/source/conf.py index ecc1b3ff59..8fd33046e9 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -118,6 +118,7 @@ def generate_apidocs(*args): "show_toc_level": 1, "footer_items": ["copyright"], "navbar_align": "content", + "logo": {"image_light": "../images/MONAI-logo-color.png", "image_dark": "../images/MONAI-logo-color.png"}, } html_context = { "github_user": "Project-MONAI",