From a390d46edc97fea8fa90ac43224d991f639a4eb7 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 04:52:40 -0400
Subject: [PATCH 01/20] fixes
 https://github.com/Project-MONAI/research-contributions/issues/235

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 monai/networks/layers/factories.py |  7 +++----
 monai/networks/utils.py            | 28 ++++++++++++++++++++++++++--
 tests/test_dynunet.py              |  9 ---------
 3 files changed, 29 insertions(+), 15 deletions(-)

diff --git a/monai/networks/layers/factories.py b/monai/networks/layers/factories.py
index 8c3d9766a4..bb56b0c0c5 100644
--- a/monai/networks/layers/factories.py
+++ b/monai/networks/layers/factories.py
@@ -67,10 +67,9 @@ def use_factory(fact_args):
 
 import torch.nn as nn
 
+from monai.networks.utils import has_nvfuser_instance_norm
 from monai.utils import look_up_option, optional_import
 
-InstanceNorm3dNVFuser, has_nvfuser = optional_import("apex.normalization", name="InstanceNorm3dNVFuser")
-
 __all__ = ["LayerFactory", "Dropout", "Norm", "Act", "Conv", "Pool", "Pad", "split_args"]
 
 
@@ -267,12 +266,12 @@ def instance_nvfuser_factory(dim):
         warnings.warn(f"`InstanceNorm3dNVFuser` only supports 3d cases, use {types[dim - 1]} instead.")
         return types[dim - 1]
 
-    if not has_nvfuser:
+    if not has_nvfuser_instance_norm():
         warnings.warn(
             "`apex.normalization.InstanceNorm3dNVFuser` is not installed properly, use nn.InstanceNorm3d instead."
         )
         return nn.InstanceNorm3d
-    return InstanceNorm3dNVFuser
+    return optional_import("apex.normalization", name="InstanceNorm3dNVFuser")[0]
 
 
 Act.add_factory_callable("elu", lambda: nn.modules.ELU)
diff --git a/monai/networks/utils.py b/monai/networks/utils.py
index 57b59b3f64..01126419db 100644
--- a/monai/networks/utils.py
+++ b/monai/networks/utils.py
@@ -27,10 +27,10 @@
 import torch
 import torch.nn as nn
 
-from monai.apps.utils import get_logger, optional_import
+from monai.apps.utils import get_logger
 from monai.config import PathLike
 from monai.utils.misc import ensure_tuple, save_obj, set_determinism
-from monai.utils.module import look_up_option, pytorch_after
+from monai.utils.module import look_up_option, optional_import, pytorch_after
 from monai.utils.type_conversion import convert_to_dst_type, convert_to_tensor
 
 onnx, _ = optional_import("onnx")
@@ -59,10 +59,34 @@
     "replace_modules_temp",
     "look_up_named_module",
     "set_named_module",
+    "has_nvfuser_instance_norm",
 ]
 
 logger = get_logger(module_name=__name__)
 
+global _has_nvfuser
+_has_nvfuser = None
+
+
+def has_nvfuser_instance_norm():
+    """whether the current environment has InstanceNorm3dNVFuser
+    https://github.com/NVIDIA/apex/blob/23.05-devel/apex/normalization/instance_norm.py#L15-L16
+    """
+    global _has_nvfuser
+    if _has_nvfuser is not None:
+        return _has_nvfuser
+
+    _, _has_nvfuser = optional_import("apex.normalization", name="InstanceNorm3dNVFuser")
+    if not _has_nvfuser:
+        return False
+    try:
+        import importlib
+
+        importlib.import_module("instance_norm_nvfuser_cuda")
+    except ImportError:
+        _has_nvfuser = False
+    return _has_nvfuser
+
 
 def look_up_named_module(name: str, mod, print_all_options=False):
     """
diff --git a/tests/test_dynunet.py b/tests/test_dynunet.py
index 247da14b7d..56bfa0ee3d 100644
--- a/tests/test_dynunet.py
+++ b/tests/test_dynunet.py
@@ -128,15 +128,6 @@ def test_script(self):
 @skip_if_no_cuda
 @skip_if_windows
 class TestDynUNetWithInstanceNorm3dNVFuser(unittest.TestCase):
-    def setUp(self):
-        try:
-            layer = InstanceNorm3dNVFuser(num_features=1, affine=False).to("cuda:0")
-            inp = torch.randn([1, 1, 1, 1, 1]).to("cuda:0")
-            out = layer(inp)
-            del inp, out, layer
-        except Exception:
-            self.skipTest("NVFuser not available")
-
     @parameterized.expand([TEST_CASE_DYNUNET_3D[0]])
     def test_consistency(self, input_param, input_shape, _):
         for eps in [1e-4, 1e-5]:

From 783ebf7302ed1029e94e57a165104be5bd240c8b Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 11:22:16 +0100
Subject: [PATCH 02/20] update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 tests/test_dynunet.py | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/tests/test_dynunet.py b/tests/test_dynunet.py
index 56bfa0ee3d..c37158ded4 100644
--- a/tests/test_dynunet.py
+++ b/tests/test_dynunet.py
@@ -19,11 +19,8 @@
 
 from monai.networks import eval_mode
 from monai.networks.nets import DynUNet
-from monai.utils import optional_import
 from tests.utils import assert_allclose, skip_if_no_cuda, skip_if_windows, test_script_save
 
-InstanceNorm3dNVFuser, _ = optional_import("apex.normalization", name="InstanceNorm3dNVFuser")
-
 device = "cuda" if torch.cuda.is_available() else "cpu"
 
 strides: Sequence[Sequence[int] | int]

From 93052057e3d976a61a5616ca5311a1b26e4a1e71 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 11:35:26 +0100
Subject: [PATCH 03/20] remove unused variables

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 monai/apps/detection/transforms/box_ops.py         | 4 +---
 monai/apps/pathology/transforms/post/dictionary.py | 1 -
 monai/inferers/utils.py                            | 4 ++--
 3 files changed, 3 insertions(+), 6 deletions(-)

diff --git a/monai/apps/detection/transforms/box_ops.py b/monai/apps/detection/transforms/box_ops.py
index 15de8a4342..d63a155e42 100644
--- a/monai/apps/detection/transforms/box_ops.py
+++ b/monai/apps/detection/transforms/box_ops.py
@@ -21,12 +21,10 @@
 from monai.data.box_utils import COMPUTE_DTYPE, TO_REMOVE, get_spatial_dims
 from monai.transforms import Resize
 from monai.transforms.utils import create_scale
-from monai.utils import look_up_option, optional_import
+from monai.utils import look_up_option
 from monai.utils.misc import ensure_tuple, ensure_tuple_rep
 from monai.utils.type_conversion import convert_data_type, convert_to_dst_type
 
-scipy, _ = optional_import("scipy")
-
 
 def _apply_affine_to_points(points: torch.Tensor, affine: torch.Tensor, include_shift: bool = True) -> torch.Tensor:
     """
diff --git a/monai/apps/pathology/transforms/post/dictionary.py b/monai/apps/pathology/transforms/post/dictionary.py
index a95bdfd48f..1e2540daee 100644
--- a/monai/apps/pathology/transforms/post/dictionary.py
+++ b/monai/apps/pathology/transforms/post/dictionary.py
@@ -35,7 +35,6 @@
 from monai.utils.enums import HoVerNetBranch
 
 find_contours, _ = optional_import("skimage.measure", name="find_contours")
-moments, _ = optional_import("skimage.measure", name="moments")
 
 __all__ = [
     "WatershedD",
diff --git a/monai/inferers/utils.py b/monai/inferers/utils.py
index b79d119414..92f267e8a2 100644
--- a/monai/inferers/utils.py
+++ b/monai/inferers/utils.py
@@ -280,7 +280,7 @@ def sliding_window_inference(
             else:
                 sw_device_buffer[ss] *= w_t
                 sw_device_buffer[ss] = sw_device_buffer[ss].to(device)
-                _compute_coords(sw_batch_size, unravel_slice, z_scale, output_image_list[ss], sw_device_buffer[ss])
+                _compute_coords(unravel_slice, z_scale, output_image_list[ss], sw_device_buffer[ss])
         sw_device_buffer = []
         if buffered:
             b_s += 1
@@ -342,7 +342,7 @@ def _create_buffered_slices(slices, batch_size, sw_batch_size, buffer_dim, buffe
     return slices, n_per_batch, b_slices, windows_range
 
 
-def _compute_coords(sw, coords, z_scale, out, patch):
+def _compute_coords(coords, z_scale, out, patch):
     """sliding window batch spatial scaling indexing for multi-resolution outputs."""
     for original_idx, p in zip(coords, patch):
         idx_zm = list(original_idx)  # 4D for 2D image, 5D for 3D image

From 12cb977382d9cf906865adbed27bcaeece4d38b7 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 12:40:34 +0100
Subject: [PATCH 04/20] remove duplidated tests (in test_lmdbdataset_dist)

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 tests/test_lmdbdataset.py | 42 +--------------------------------------
 1 file changed, 1 insertion(+), 41 deletions(-)

diff --git a/tests/test_lmdbdataset.py b/tests/test_lmdbdataset.py
index 080868b0dd..155b4eb0fc 100644
--- a/tests/test_lmdbdataset.py
+++ b/tests/test_lmdbdataset.py
@@ -12,7 +12,6 @@
 from __future__ import annotations
 
 import os
-import shutil
 import tempfile
 import unittest
 
@@ -22,7 +21,7 @@
 
 from monai.data import LMDBDataset, json_hashing
 from monai.transforms import Compose, LoadImaged, SimulateDelayd, Transform
-from tests.utils import DistCall, DistTestCase, skip_if_windows
+from tests.utils import skip_if_windows
 
 TEST_CASE_1 = [
     Compose(
@@ -204,44 +203,5 @@ def test_shape(self, transform, expected_shape, kwargs=None):
                     dataset_postcached.set_data(data=test_data_new)  # filename list updated, files do not exist
 
 
-@skip_if_windows
-class TestMPLMDBDataset(DistTestCase):
-    def setUp(self):
-        self.tempdir = tempfile.mkdtemp()
-
-    def tearDown(self):
-        shutil.rmtree(self.tempdir)
-
-    @DistCall(nnodes=1, nproc_per_node=1)
-    def test_mp_cache(self):
-        items = [[list(range(i))] for i in range(5)]
-
-        ds = LMDBDataset(items, transform=_InplaceXform(), cache_dir=self.tempdir, lmdb_kwargs={"map_size": 10 * 1024})
-        self.assertEqual(items, [[[]], [[0]], [[0, 1]], [[0, 1, 2]], [[0, 1, 2, 3]]])
-        ds1 = LMDBDataset(items, transform=_InplaceXform(), cache_dir=self.tempdir, lmdb_kwargs={"map_size": 10 * 1024})
-        self.assertEqual(list(ds1), list(ds))
-        self.assertEqual(items, [[[]], [[0]], [[0, 1]], [[0, 1, 2]], [[0, 1, 2, 3]]])
-
-        ds = LMDBDataset(
-            items,
-            transform=_InplaceXform(),
-            cache_dir=self.tempdir,
-            lmdb_kwargs={"map_size": 10 * 1024},
-            hash_func=json_hashing,
-        )
-        self.assertEqual(items, [[[]], [[0]], [[0, 1]], [[0, 1, 2]], [[0, 1, 2, 3]]])
-        ds1 = LMDBDataset(
-            items,
-            transform=_InplaceXform(),
-            cache_dir=self.tempdir,
-            lmdb_kwargs={"map_size": 10 * 1024},
-            hash_func=json_hashing,
-        )
-        self.assertEqual(list(ds1), list(ds))
-        self.assertEqual(items, [[[]], [[0]], [[0, 1]], [[0, 1, 2]], [[0, 1, 2, 3]]])
-
-        self.assertTrue(isinstance(ds1.info(), dict))
-
-
 if __name__ == "__main__":
     unittest.main()

From 4d75aabb7b62d3136b7442628b5312528c5b26c7 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:01:22 +0100
Subject: [PATCH 05/20] update tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 82 ++++++++++++++++++++++++++-----
 1 file changed, 69 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 5b5e32c159..7a2b2276b2 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -6,10 +6,10 @@ on:
     type: [integration-test-command]
 
 jobs:
-  integration-py3:
+  integration-auto3dseg:
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
-      options: --gpus "device=0" --ipc host  # shm-size 4g works fine
+      options: --gpus "device=1" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command]
     steps:
     # checkout the pull request branch
@@ -45,7 +45,7 @@ jobs:
       run: |
         python -m pip list
         git config --global --add safe.directory /__w/MONAI/MONAI
-        git clean -ffdx
+        git clean -ffdx && git reset --hard HEAD
         nvidia-smi
         export CUDA_VISIBLE_DEVICES=$(python -m tests.utils -c 1 | tail -n 1)
         echo $CUDA_VISIBLE_DEVICES
@@ -63,6 +63,70 @@ jobs:
         python -m tests.test_integration_autorunner
         python -m tests.test_integration_gpu_customization
 
+    - name: Integration tests
+      shell: bash
+      env:
+        BUILD_MONAI: 1
+      run: |
+        pwd
+        ls -ll
+        ./runtests.sh --build --net
+
+    - name: Add reaction
+      uses: peter-evans/create-or-update-comment@v2
+      if: github.event.pull_request.number != ''
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
+        comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
+        reaction-type: rocket
+
+  integration-full-unit:
+    container:
+      image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
+      options: --gpus "device=2" --ipc host  # shm-size 4g works fine
+    runs-on: [self-hosted, linux, x64, command]
+    steps:
+    # checkout the pull request branch
+    - uses: actions/checkout@v3
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
+        ref: ${{ github.event.client_payload.pull_request.head.ref }}
+    - name: cache weekly timestamp
+      id: pip-cache
+      run: |
+        echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
+    - name: cache for pip
+      uses: actions/cache@v3
+      id: cache
+      with:
+        path: |
+          ~/.cache/pip
+          ~/.cache/torch
+        key: docker-py3-pip-${{ steps.pip-cache.outputs.datew }}
+    - name: Install the dependencies
+      run: |
+        which python
+        python -m pip install --upgrade pip wheel
+        pip uninstall -y monai
+        pip uninstall -y monai
+        pip uninstall -y monai-weekly
+        pip uninstall -y monai-weekly
+        python -m pip install --upgrade torch torchvision torchaudio
+        python -m pip install -r requirements-dev.txt
+        rm -rf /github/home/.cache/torch/hub/mmars/
+    - name: Clean directory
+      run: |
+        python -m pip list
+        git config --global --add safe.directory /__w/MONAI/MONAI
+        git clean -ffdx && git reset --hard HEAD
+        nvidia-smi
+        export CUDA_VISIBLE_DEVICES=$(python -m tests.utils -c 1 | tail -n 1)
+        echo $CUDA_VISIBLE_DEVICES
+        python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
+        python -c 'import torch; print(torch.rand(5,3, device=torch.device("cuda:0")))'
+
     - name: Auto3dseg latest algo
       shell: bash
       env:
@@ -70,6 +134,7 @@ jobs:
       run: |
         # test latest template
         echo "test latest algo"
+        pwd
         cd ../
         rm -rf research-contributions
         rm -rf algorithm_templates
@@ -87,15 +152,6 @@ jobs:
         python -m tests.test_integration_autorunner
         python -m tests.test_integration_gpu_customization
 
-    - name: Integration tests
-      shell: bash
-      env:
-        BUILD_MONAI: 1
-      run: |
-        pwd
-        ls -ll
-        ./runtests.sh --build --net
-
     - name: Unit tests
       shell: bash
       env:
@@ -112,4 +168,4 @@ jobs:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
         comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
-        reaction-type: rocket
+        reaction-type: +1

From a07d6470877fe35dd41e37ff9ab4977023076b9e Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:01:40 +0100
Subject: [PATCH 06/20] temp test

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 7a2b2276b2..b0e84a9957 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -2,6 +2,9 @@
 name: integration
 
 on:
+  push:
+    branches:
+      - temp-test
   repository_dispatch:
     type: [integration-test-command]
 

From a784655ca62bed33e6b45233766cf00710337f9a Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:03:11 +0100
Subject: [PATCH 07/20] update tag

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index b0e84a9957..208b20c0a8 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -88,7 +88,7 @@ jobs:
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine
-    runs-on: [self-hosted, linux, x64, command]
+    runs-on: [self-hosted, linux, x64, command1]
     steps:
     # checkout the pull request branch
     - uses: actions/checkout@v3

From 2e4f88c828809727b95e4ad94255510392d484ec Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:27:33 +0100
Subject: [PATCH 08/20] temp tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 52 +++++++++++++------------------
 1 file changed, 22 insertions(+), 30 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 208b20c0a8..01e3417f05 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -9,7 +9,7 @@ on:
     type: [integration-test-command]
 
 jobs:
-  integration-auto3dseg:
+  setup-folders:
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=1" --ipc host  # shm-size 4g works fine
@@ -54,13 +54,32 @@ jobs:
         echo $CUDA_VISIBLE_DEVICES
         python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
         python -c 'import torch; print(torch.rand(5,3, device=torch.device("cuda:0")))'
+        BUILD_MONAI=0 ./runtests.sh --build
+
+  integration-auto3dseg:
+    container:
+      image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
+      options: --gpus "device=1" --ipc host  # shm-size 4g works fine
+    runs-on: [self-hosted, linux, x64, command]
+    steps:
+    # checkout the pull request branch
+    - uses: actions/checkout@v3
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
+        ref: ${{ github.event.client_payload.pull_request.head.ref }}
+    - name: Install the dependencies
+      run: |
+        which python
+        python -m pip install --upgrade pip wheel
+        python -m pip install --upgrade torch torchvision torchaudio
+        python -m pip install -r requirements-dev.txt
 
     - name: Auto3dseg tag algo
       shell: bash
       env:
         BUILD_MONAI: 0
       run: |
-        BUILD_MONAI=0 ./runtests.sh --build
         python -m tests.test_auto3dseg_ensemble
         python -m tests.test_auto3dseg_hpo
         python -m tests.test_integration_autorunner
@@ -96,39 +115,12 @@ jobs:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
         ref: ${{ github.event.client_payload.pull_request.head.ref }}
-    - name: cache weekly timestamp
-      id: pip-cache
-      run: |
-        echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
-    - name: cache for pip
-      uses: actions/cache@v3
-      id: cache
-      with:
-        path: |
-          ~/.cache/pip
-          ~/.cache/torch
-        key: docker-py3-pip-${{ steps.pip-cache.outputs.datew }}
     - name: Install the dependencies
       run: |
         which python
         python -m pip install --upgrade pip wheel
-        pip uninstall -y monai
-        pip uninstall -y monai
-        pip uninstall -y monai-weekly
-        pip uninstall -y monai-weekly
         python -m pip install --upgrade torch torchvision torchaudio
         python -m pip install -r requirements-dev.txt
-        rm -rf /github/home/.cache/torch/hub/mmars/
-    - name: Clean directory
-      run: |
-        python -m pip list
-        git config --global --add safe.directory /__w/MONAI/MONAI
-        git clean -ffdx && git reset --hard HEAD
-        nvidia-smi
-        export CUDA_VISIBLE_DEVICES=$(python -m tests.utils -c 1 | tail -n 1)
-        echo $CUDA_VISIBLE_DEVICES
-        python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
-        python -c 'import torch; print(torch.rand(5,3, device=torch.device("cuda:0")))'
 
     - name: Auto3dseg latest algo
       shell: bash
@@ -162,7 +154,7 @@ jobs:
       run: |
         pwd
         ls -ll
-        ./runtests.sh --unittests
+        ./runtests.sh --build --unittests
 
     - name: Add reaction
       uses: peter-evans/create-or-update-comment@v2

From 3577ff346c1e48c8594bdfb64d7cf617b2500751 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:28:52 +0100
Subject: [PATCH 09/20] update dep

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 01e3417f05..cfe8f85d86 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -57,6 +57,7 @@ jobs:
         BUILD_MONAI=0 ./runtests.sh --build
 
   integration-auto3dseg:
+    needs: setup-folders
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=1" --ipc host  # shm-size 4g works fine
@@ -104,6 +105,7 @@ jobs:
         reaction-type: rocket
 
   integration-full-unit:
+    needs: setup-folders
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine

From 22a39145751c6177a72ff84cf9c827b6015ec280 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:31:38 +0100
Subject: [PATCH 10/20] update temp

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 19 ++++++-------------
 1 file changed, 6 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index cfe8f85d86..6457f8d3e0 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -63,14 +63,11 @@ jobs:
       options: --gpus "device=1" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command]
     steps:
-    # checkout the pull request branch
-    - uses: actions/checkout@v3
-      with:
-        token: ${{ secrets.PR_MAINTAIN }}
-        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
-        ref: ${{ github.event.client_payload.pull_request.head.ref }}
     - name: Install the dependencies
       run: |
+        pwd
+        ls *
+        git log -1
         which python
         python -m pip install --upgrade pip wheel
         python -m pip install --upgrade torch torchvision torchaudio
@@ -111,14 +108,11 @@ jobs:
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command1]
     steps:
-    # checkout the pull request branch
-    - uses: actions/checkout@v3
-      with:
-        token: ${{ secrets.PR_MAINTAIN }}
-        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
-        ref: ${{ github.event.client_payload.pull_request.head.ref }}
     - name: Install the dependencies
       run: |
+        pwd
+        ls *
+        git log -1
         which python
         python -m pip install --upgrade pip wheel
         python -m pip install --upgrade torch torchvision torchaudio
@@ -130,7 +124,6 @@ jobs:
         BUILD_MONAI: 0
       run: |
         # test latest template
-        echo "test latest algo"
         pwd
         cd ../
         rm -rf research-contributions

From 3b87927475adfaf96e51ea82fb78d6d88ee1393a Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:45:49 +0100
Subject: [PATCH 11/20] update temp

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 6457f8d3e0..24ae39473c 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -65,10 +65,7 @@ jobs:
     steps:
     - name: Install the dependencies
       run: |
-        pwd
-        ls *
-        git log -1
-        which python
+        pwd && git log -1 && which python
         python -m pip install --upgrade pip wheel
         python -m pip install --upgrade torch torchvision torchaudio
         python -m pip install -r requirements-dev.txt
@@ -78,6 +75,8 @@ jobs:
       env:
         BUILD_MONAI: 0
       run: |
+        pwd && git log -1 && which python
+        ./runtests.sh -b
         python -m tests.test_auto3dseg_ensemble
         python -m tests.test_auto3dseg_hpo
         python -m tests.test_integration_autorunner
@@ -88,8 +87,6 @@ jobs:
       env:
         BUILD_MONAI: 1
       run: |
-        pwd
-        ls -ll
         ./runtests.sh --build --net
 
     - name: Add reaction
@@ -110,10 +107,7 @@ jobs:
     steps:
     - name: Install the dependencies
       run: |
-        pwd
-        ls *
-        git log -1
-        which python
+        pwd && git log -1 && which python
         python -m pip install --upgrade pip wheel
         python -m pip install --upgrade torch torchvision torchaudio
         python -m pip install -r requirements-dev.txt
@@ -137,6 +131,8 @@ jobs:
         export OMP_NUM_THREADS=4
         export MKL_NUM_THREADS=4
         export MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates
+        pwd && git log -1 && which python
+        ./runtests.sh -b
         python -m tests.test_auto3dseg_ensemble
         python -m tests.test_auto3dseg_hpo
         python -m tests.test_integration_autorunner
@@ -147,8 +143,6 @@ jobs:
       env:
         BUILD_MONAI: 1
       run: |
-        pwd
-        ls -ll
         ./runtests.sh --build --unittests
 
     - name: Add reaction

From 30491a5ff384556f597e13d9a906fe10519954b7 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 13:56:20 +0100
Subject: [PATCH 12/20] update

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 24ae39473c..0d66100924 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -4,7 +4,7 @@ name: integration
 on:
   push:
     branches:
-      - temp-test
+      - dev
   repository_dispatch:
     type: [integration-test-command]
 
@@ -41,7 +41,7 @@ jobs:
         pip uninstall -y monai
         pip uninstall -y monai-weekly
         pip uninstall -y monai-weekly
-        python -m pip install --upgrade torch torchvision torchaudio
+        python -m pip install --upgrade torch torchvision torchaudio torchtext
         python -m pip install -r requirements-dev.txt
         rm -rf /github/home/.cache/torch/hub/mmars/
     - name: Clean directory
@@ -67,7 +67,7 @@ jobs:
       run: |
         pwd && git log -1 && which python
         python -m pip install --upgrade pip wheel
-        python -m pip install --upgrade torch torchvision torchaudio
+        python -m pip install --upgrade torch torchvision torchaudio torchtext
         python -m pip install -r requirements-dev.txt
 
     - name: Auto3dseg tag algo
@@ -109,7 +109,7 @@ jobs:
       run: |
         pwd && git log -1 && which python
         python -m pip install --upgrade pip wheel
-        python -m pip install --upgrade torch torchvision torchaudio
+        python -m pip install --upgrade torch torchvision torchaudio torchtext
         python -m pip install -r requirements-dev.txt
 
     - name: Auto3dseg latest algo

From 9bec9092062923369864cc86f57e451f1938294e Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 14:42:45 +0100
Subject: [PATCH 13/20] temp test

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 16 +++++++++++++---
 1 file changed, 13 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 0d66100924..a78e37e102 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -4,7 +4,7 @@ name: integration
 on:
   push:
     branches:
-      - dev
+      - temp-test
   repository_dispatch:
     type: [integration-test-command]
 
@@ -63,6 +63,12 @@ jobs:
       options: --gpus "device=1" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command]
     steps:
+    # checkout the pull request branch
+    - uses: actions/checkout@v3
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
+        ref: ${{ github.event.client_payload.pull_request.head.ref }}
     - name: Install the dependencies
       run: |
         pwd && git log -1 && which python
@@ -81,7 +87,6 @@ jobs:
         python -m tests.test_auto3dseg_hpo
         python -m tests.test_integration_autorunner
         python -m tests.test_integration_gpu_customization
-
     - name: Integration tests
       shell: bash
       env:
@@ -105,6 +110,12 @@ jobs:
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command1]
     steps:
+    # checkout the pull request branch
+    - uses: actions/checkout@v3
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
+        ref: ${{ github.event.client_payload.pull_request.head.ref }}
     - name: Install the dependencies
       run: |
         pwd && git log -1 && which python
@@ -137,7 +148,6 @@ jobs:
         python -m tests.test_auto3dseg_hpo
         python -m tests.test_integration_autorunner
         python -m tests.test_integration_gpu_customization
-
     - name: Unit tests
       shell: bash
       env:

From 5b8064938bd5507d39304057b0d763e2e50f967e Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 14:44:20 +0100
Subject: [PATCH 14/20] update tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 126 +-----------------------------
 1 file changed, 4 insertions(+), 122 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index a78e37e102..d4938ca242 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -21,40 +21,8 @@ jobs:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
         ref: ${{ github.event.client_payload.pull_request.head.ref }}
-    - name: cache weekly timestamp
-      id: pip-cache
-      run: |
-        echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
-    - name: cache for pip
-      uses: actions/cache@v3
-      id: cache
-      with:
-        path: |
-          ~/.cache/pip
-          ~/.cache/torch
-        key: docker-py3-pip-${{ steps.pip-cache.outputs.datew }}
-    - name: Install the dependencies
-      run: |
-        which python
-        python -m pip install --upgrade pip wheel
-        pip uninstall -y monai
-        pip uninstall -y monai
-        pip uninstall -y monai-weekly
-        pip uninstall -y monai-weekly
-        python -m pip install --upgrade torch torchvision torchaudio torchtext
-        python -m pip install -r requirements-dev.txt
-        rm -rf /github/home/.cache/torch/hub/mmars/
-    - name: Clean directory
-      run: |
-        python -m pip list
-        git config --global --add safe.directory /__w/MONAI/MONAI
-        git clean -ffdx && git reset --hard HEAD
-        nvidia-smi
-        export CUDA_VISIBLE_DEVICES=$(python -m tests.utils -c 1 | tail -n 1)
-        echo $CUDA_VISIBLE_DEVICES
-        python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
-        python -c 'import torch; print(torch.rand(5,3, device=torch.device("cuda:0")))'
-        BUILD_MONAI=0 ./runtests.sh --build
+    - name: make updates
+      run: touch hello.txt
 
   integration-auto3dseg:
     needs: setup-folders
@@ -63,45 +31,9 @@ jobs:
       options: --gpus "device=1" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command]
     steps:
-    # checkout the pull request branch
-    - uses: actions/checkout@v3
-      with:
-        token: ${{ secrets.PR_MAINTAIN }}
-        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
-        ref: ${{ github.event.client_payload.pull_request.head.ref }}
     - name: Install the dependencies
       run: |
-        pwd && git log -1 && which python
-        python -m pip install --upgrade pip wheel
-        python -m pip install --upgrade torch torchvision torchaudio torchtext
-        python -m pip install -r requirements-dev.txt
-
-    - name: Auto3dseg tag algo
-      shell: bash
-      env:
-        BUILD_MONAI: 0
-      run: |
-        pwd && git log -1 && which python
-        ./runtests.sh -b
-        python -m tests.test_auto3dseg_ensemble
-        python -m tests.test_auto3dseg_hpo
-        python -m tests.test_integration_autorunner
-        python -m tests.test_integration_gpu_customization
-    - name: Integration tests
-      shell: bash
-      env:
-        BUILD_MONAI: 1
-      run: |
-        ./runtests.sh --build --net
-
-    - name: Add reaction
-      uses: peter-evans/create-or-update-comment@v2
-      if: github.event.pull_request.number != ''
-      with:
-        token: ${{ secrets.PR_MAINTAIN }}
-        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
-        comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
-        reaction-type: rocket
+        pwd && ls -a && git log -1 && which python
 
   integration-full-unit:
     needs: setup-folders
@@ -110,56 +42,6 @@ jobs:
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command1]
     steps:
-    # checkout the pull request branch
-    - uses: actions/checkout@v3
-      with:
-        token: ${{ secrets.PR_MAINTAIN }}
-        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
-        ref: ${{ github.event.client_payload.pull_request.head.ref }}
     - name: Install the dependencies
       run: |
-        pwd && git log -1 && which python
-        python -m pip install --upgrade pip wheel
-        python -m pip install --upgrade torch torchvision torchaudio torchtext
-        python -m pip install -r requirements-dev.txt
-
-    - name: Auto3dseg latest algo
-      shell: bash
-      env:
-        BUILD_MONAI: 0
-      run: |
-        # test latest template
-        pwd
-        cd ../
-        rm -rf research-contributions
-        rm -rf algorithm_templates
-        git clone --depth 1 --branch main --single-branch https://github.com/Project-MONAI/research-contributions.git
-        ls research-contributions/
-        cp -r research-contributions/auto3dseg/algorithm_templates MONAI/
-        cd research-contributions && git log -1 && cd ../MONAI
-        pwd
-        ls -ll
-        export OMP_NUM_THREADS=4
-        export MKL_NUM_THREADS=4
-        export MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates
-        pwd && git log -1 && which python
-        ./runtests.sh -b
-        python -m tests.test_auto3dseg_ensemble
-        python -m tests.test_auto3dseg_hpo
-        python -m tests.test_integration_autorunner
-        python -m tests.test_integration_gpu_customization
-    - name: Unit tests
-      shell: bash
-      env:
-        BUILD_MONAI: 1
-      run: |
-        ./runtests.sh --build --unittests
-
-    - name: Add reaction
-      uses: peter-evans/create-or-update-comment@v2
-      if: github.event.pull_request.number != ''
-      with:
-        token: ${{ secrets.PR_MAINTAIN }}
-        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
-        comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
-        reaction-type: +1
+        pwd && ls -a && git log -1 && which python

From 2eb0fc1f2a39dc44c6c04d2a5fa0cb7b1bae2151 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 14:56:30 +0100
Subject: [PATCH 15/20] update

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 146 +++++++++++++++++++++++++++---
 1 file changed, 133 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index d4938ca242..275ab020fb 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -9,7 +9,7 @@ on:
     type: [integration-test-command]
 
 jobs:
-  setup-folders:
+  integration-auto3dseg:
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=1" --ipc host  # shm-size 4g works fine
@@ -21,19 +21,65 @@ jobs:
         token: ${{ secrets.PR_MAINTAIN }}
         repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
         ref: ${{ github.event.client_payload.pull_request.head.ref }}
-    - name: make updates
-      run: touch hello.txt
-
-  integration-auto3dseg:
-    needs: setup-folders
-    container:
-      image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
-      options: --gpus "device=1" --ipc host  # shm-size 4g works fine
-    runs-on: [self-hosted, linux, x64, command]
-    steps:
+    - name: cache weekly timestamp
+      id: pip-cache
+      run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
+    - name: cache for pip
+      uses: actions/cache@v3
+      id: cache
+      with:
+        path: |
+          ~/.cache/pip
+          ~/.cache/torch
+        key: docker-py3-pip-${{ steps.pip-cache.outputs.datew }}
     - name: Install the dependencies
       run: |
-        pwd && ls -a && git log -1 && which python
+        pwd && git log -1 && which python
+        python -m pip install --upgrade pip wheel
+        pip uninstall -y monai
+        pip uninstall -y monai
+        pip uninstall -y monai-weekly
+        pip uninstall -y monai-weekly
+        python -m pip install --upgrade torch torchvision torchaudio torchtext
+        python -m pip install -r requirements-dev.txt
+        rm -rf /github/home/.cache/torch/hub/mmars/
+    - name: Clean directory
+      run: |
+        python -m pip list
+        git config --global --add safe.directory /__w/MONAI/MONAI
+        git clean -ffdx && git reset --hard HEAD
+        nvidia-smi
+        export CUDA_VISIBLE_DEVICES=$(python -m tests.utils -c 1 | tail -n 1)
+        echo $CUDA_VISIBLE_DEVICES
+        python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
+        python -c 'import torch; print(torch.rand(5,3, device=torch.device("cuda:0")))'
+
+    - name: Auto3dseg tag algo
+      shell: bash
+      env:
+        BUILD_MONAI: 0
+      run: |
+        pwd && git log -1 && which python
+        ./runtests.sh -b
+        python -m tests.test_auto3dseg_ensemble
+        python -m tests.test_auto3dseg_hpo
+        python -m tests.test_integration_autorunner
+        python -m tests.test_integration_gpu_customization
+    - name: Integration tests
+      shell: bash
+      env:
+        BUILD_MONAI: 1
+      run: ./runtests.sh --build --net
+
+    - name: Add reaction
+      uses: peter-evans/create-or-update-comment@v2
+      if: github.event.pull_request.number != ''
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
+        comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
+        reaction-type: rocket
+
 
   integration-full-unit:
     needs: setup-folders
@@ -42,6 +88,80 @@ jobs:
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine
     runs-on: [self-hosted, linux, x64, command1]
     steps:
+    # checkout the pull request branch
+    - uses: actions/checkout@v3
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.pull_request.head.repo.full_name }}
+        ref: ${{ github.event.client_payload.pull_request.head.ref }}
+    - name: cache weekly timestamp
+      id: pip-cache
+      run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
+    - name: cache for pip
+      uses: actions/cache@v3
+      id: cache
+      with:
+        path: |
+          ~/.cache/pip
+          ~/.cache/torch
+        key: docker-py3-pip-${{ steps.pip-cache.outputs.datew }}
     - name: Install the dependencies
       run: |
-        pwd && ls -a && git log -1 && which python
+        pwd && git log -1 && which python
+        python -m pip install --upgrade pip wheel
+        pip uninstall -y monai
+        pip uninstall -y monai
+        pip uninstall -y monai-weekly
+        pip uninstall -y monai-weekly
+        python -m pip install --upgrade torch torchvision torchaudio torchtext
+        python -m pip install -r requirements-dev.txt
+        rm -rf /github/home/.cache/torch/hub/mmars/
+    - name: Clean directory
+      run: |
+        python -m pip list
+        git config --global --add safe.directory /__w/MONAI/MONAI
+        git clean -ffdx && git reset --hard HEAD
+        nvidia-smi
+        export CUDA_VISIBLE_DEVICES=$(python -m tests.utils -c 1 | tail -n 1)
+        echo $CUDA_VISIBLE_DEVICES
+        python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
+        python -c 'import torch; print(torch.rand(5,3, device=torch.device("cuda:0")))'
+
+    - name: Auto3dseg latest algo
+      shell: bash
+      env:
+        BUILD_MONAI: 0
+      run: |
+        pwd
+        cd ../
+        rm -rf research-contributions
+        rm -rf algorithm_templates
+        git clone --depth 1 --branch main --single-branch https://github.com/Project-MONAI/research-contributions.git
+        ls research-contributions/
+        cp -r research-contributions/auto3dseg/algorithm_templates MONAI/
+        cd research-contributions && git log -1 && cd ../MONAI
+        pwd
+        ls -ll
+        export OMP_NUM_THREADS=4
+        export MKL_NUM_THREADS=4
+        export MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates
+        pwd && git log -1 && which python
+        ./runtests.sh -b
+        python -m tests.test_auto3dseg_ensemble
+        python -m tests.test_auto3dseg_hpo
+        python -m tests.test_integration_autorunner
+        python -m tests.test_integration_gpu_customization
+    - name: Unit tests
+      shell: bash
+      env:
+        BUILD_MONAI: 1
+      run: ./runtests.sh --build --unittests
+
+    - name: Add reaction
+      uses: peter-evans/create-or-update-comment@v2
+      if: github.event.pull_request.number != ''
+      with:
+        token: ${{ secrets.PR_MAINTAIN }}
+        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
+        comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
+        reaction-type: +1

From 2770194d80ee0402f311d4da4e0cac4670715647 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 14:56:55 +0100
Subject: [PATCH 16/20] remove needs

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 275ab020fb..fd31b0885f 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -82,7 +82,6 @@ jobs:
 
 
   integration-full-unit:
-    needs: setup-folders
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine

From e625ee0d16e26cd63ea04ded1b11e610a8916c92 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 14:58:23 +0100
Subject: [PATCH 17/20] dev tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index fd31b0885f..7d22a9503e 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -4,7 +4,7 @@ name: integration
 on:
   push:
     branches:
-      - temp-test
+      - dev
   repository_dispatch:
     type: [integration-test-command]
 

From 040720fb0cc75cbb490bd8f110b9c12f509c0aa8 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 16:30:31 +0100
Subject: [PATCH 18/20] update

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 7d22a9503e..0ed89c64ab 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -2,9 +2,6 @@
 name: integration
 
 on:
-  push:
-    branches:
-      - dev
   repository_dispatch:
     type: [integration-test-command]
 

From 51794c9666ded084c4673133620fb2ad9b532691 Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 16:33:11 +0100
Subject: [PATCH 19/20] update

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 .github/workflows/integration.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/integration.yml b/.github/workflows/integration.yml
index 0ed89c64ab..e373c6ac34 100644
--- a/.github/workflows/integration.yml
+++ b/.github/workflows/integration.yml
@@ -78,7 +78,7 @@ jobs:
         reaction-type: rocket
 
 
-  integration-full-unit:
+  integration-unit:
     container:
       image: nvcr.io/nvidia/pytorch:22.04-py3  # CUDA 11.6 py38
       options: --gpus "device=2" --ipc host  # shm-size 4g works fine
@@ -151,6 +151,7 @@ jobs:
       shell: bash
       env:
         BUILD_MONAI: 1
+        QUICKTEST: True
       run: ./runtests.sh --build --unittests
 
     - name: Add reaction

From 767bb1cf50609319e45f278422131c480186277b Mon Sep 17 00:00:00 2001
From: Wenqi Li <wenqil@nvidia.com>
Date: Wed, 19 Apr 2023 17:16:19 +0100
Subject: [PATCH 20/20] update template hash

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
---
 monai/apps/auto3dseg/bundle_gen.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/monai/apps/auto3dseg/bundle_gen.py b/monai/apps/auto3dseg/bundle_gen.py
index 98b6b2186d..27aed9a757 100644
--- a/monai/apps/auto3dseg/bundle_gen.py
+++ b/monai/apps/auto3dseg/bundle_gen.py
@@ -36,7 +36,7 @@
 from monai.utils.enums import AlgoKeys
 
 logger = get_logger(module_name=__name__)
-ALGO_HASH = os.environ.get("MONAI_ALGO_HASH", "5b4e379")
+ALGO_HASH = os.environ.get("MONAI_ALGO_HASH", "e619d26")
 
 __all__ = ["BundleAlgo", "BundleGen"]