diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 14b41bbeb8..08b75b1e97 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -27,7 +27,7 @@ repos:
       - id: end-of-file-fixer
       - id: mixed-line-ending
   - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.261
+    rev: v0.3.5
     hooks:
     -   id: ruff
         args:
diff --git a/pyproject.toml b/pyproject.toml
index cd8a510b04..50d0b09672 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -38,8 +38,8 @@ exclude = "monai/bundle/__main__.py"
 
 [tool.ruff]
 line-length = 133
-ignore-init-module-imports = true
-ignore = ["F401", "E741"]
+lint.ignore-init-module-imports = true
+lint.ignore = ["F401", "E741"]
 
 [tool.pytype]
 # Space-separated list of files or directories to exclude.