diff --git a/CHANGELOG.md b/CHANGELOG.md index 75392088..e7172911 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,12 @@ # Changelog +## Version 0.22.4 + +### Bugfixes + +- Fix for an error when copying of an IndexDispersion created from a Dispersion +- Fix for reading of woollam data if no dpolE is present + ## Version 0.22.3 ### Bugfixes diff --git a/src/elli/dispersions/base_dispersion.py b/src/elli/dispersions/base_dispersion.py index baa2a36f..04a021b3 100644 --- a/src/elli/dispersions/base_dispersion.py +++ b/src/elli/dispersions/base_dispersion.py @@ -2,7 +2,6 @@ """Abstract base class and utility classes for pyElli dispersion""" from abc import ABC, abstractmethod -from copy import deepcopy from typing import List, Optional, Union import numpy as np @@ -239,15 +238,25 @@ def as_index(self): Please ensure that you know what you are doing as building dielectric and index based dispersions is normally mathematically wrong. """ - index_class = deepcopy(self) - # pylint: disable=attribute-defined-outside-init - index_class.refractive_index = lambda lbda: sqrt( - index_class.dielectric_function(lbda) + + AnonymousIndexDispersion = type( + "AnonymousIndexDispersion", + (IndexDispersion,), + { + "rep_params_template": self.rep_params_template, + "single_params_template": self.single_params_template, + "dielectric_function": self.dielectric_function, + "refractive_index": lambda self, lbda: sqrt( + self.dielectric_function(lbda) + ), + }, ) - index_class.__class__ = IndexDispersion # pylint: disable=invalid-name - index_class.dielectric_function = self.dielectric_function - return index_class + idx_dispersion = AnonymousIndexDispersion() + idx_dispersion.rep_params = self.rep_params + idx_dispersion.single_params = self.single_params + + return idx_dispersion class IndexDispersion(BaseDispersion): @@ -301,18 +310,6 @@ def __add__( def dielectric_function(self, lbda: npt.ArrayLike) -> npt.NDArray: return self.refractive_index(lbda) ** 2 - def as_dielectric(self): - """ - Returns this class as Dispersion. - This method may be used to add dielectric and index based dispersions. - Please ensure that you know what you are doing as building dielectric - and index based dispersions is normally mathematically wrong. - """ - diel_disp = deepcopy(self) - diel_disp.__class__ = Dispersion # pylint: disable=invalid-name - diel_disp.dielectric_function = self.dielectric_function - return diel_disp - class DispersionFactory: """A factory class for dispersion objects""" diff --git a/src/elli/importer/woollam.py b/src/elli/importer/woollam.py index 425df52e..78ab66c4 100644 --- a/src/elli/importer/woollam.py +++ b/src/elli/importer/woollam.py @@ -5,7 +5,7 @@ import logging import re -from typing import TextIO +from typing import TextIO, Union import pandas as pd from pint import DimensionalityError, UndefinedUnitError @@ -20,7 +20,7 @@ is_float_regex = re.compile(r"[+-]?(\d+([.]\d*)?([eE][+-]?\d+)?|[.]\d+([eE][+-]?\d+)?)") -def is_float(line: str) -> bool: +def is_float(line: Union[float, int, str]) -> bool: """Checks whether the given line is a float Args: @@ -29,7 +29,11 @@ def is_float(line: str) -> bool: Returns: bool: True if it is a float, False otherwise """ - return bool(is_float_regex.search(line)) + if isinstance(line, (float, int)): + return True + if isinstance(line, str): + return bool(is_float_regex.search(line)) + return False def _is_wvase_tabular(line: str) -> bool: @@ -126,7 +130,7 @@ def _read_wvase_dataframe(file_object: TextIO) -> pd.DataFrame: header=None, names=["Wavelength", "Angle of Incidence", "Ψ", "Δ", "Ψ_err", "Δ_err"], ) - print(dframe) + dframe = ( dframe[dframe.apply(lambda x: is_float(x.iloc[0]), axis=1)] .set_index(["Wavelength", "Angle of Incidence"]) diff --git a/tests/test_dispersions.py b/tests/test_dispersions.py index f7a4c5a4..c111c126 100644 --- a/tests/test_dispersions.py +++ b/tests/test_dispersions.py @@ -1,6 +1,7 @@ """Tests for dispersion models""" import os +from copy import deepcopy from shutil import copytree, rmtree import numpy as np @@ -11,6 +12,7 @@ import elli from elli.dispersions.base_dispersion import InvalidParameters +from elli.dispersions.sellmeier import Sellmeier @fixture @@ -233,3 +235,38 @@ def test_correct_reconstruction_with_pseudo_dielectric(): ).get_dielectric_df(check_lbda), gaussian.get_dielectric_df(check_lbda), ) + + +def test_deepcopy_of_index_dispersion(): + sell = Sellmeier() + sell.add(1, 1) + + deepcopy(sell.as_index()) + + +def test_index_dispersion_conversion(): + sell = Sellmeier() + sell.add(1, 1) + + lbda = np.linspace(300, 900, 100) + + assert_array_equal( + sell.as_index().get_dielectric(lbda), + sell.get_dielectric(lbda), + ) + + assert_array_equal( + sell.as_index().add(2, 2).get_dielectric(lbda), sell.get_dielectric(lbda) + ) + + +def test_dispersion_conversion_to_other_type(): + lbda = np.linspace(300, 900, 100) + RII = elli.db.RII() + + disp = RII.get_dispersion("AgCl", "Tilton") + + assert_array_equal( + disp.as_index().get_dielectric(lbda), + disp.get_dielectric(lbda), + ) diff --git a/tests/test_wollam.py b/tests/test_wollam.py index a7b75443..7e667fa7 100644 --- a/tests/test_wollam.py +++ b/tests/test_wollam.py @@ -2,6 +2,7 @@ import pytest from fixtures import datadir # pylint: disable=unused-import + import elli @@ -9,9 +10,13 @@ def test_reading_of_psi_delta_woollam(datadir): """Psi/delta Spectraray file is read w/o errors""" data_wvase = elli.read_woollam_psi_delta(datadir / "wvase_example.dat") + data_wvase_wo_dpolE = elli.read_woollam_psi_delta( + datadir / "wvase_example_wo_dpolE.dat" + ) data_cease = elli.read_woollam_psi_delta(datadir / "complete_ease_example.dat") assert data_wvase.shape == (542, 2) + assert data_wvase_wo_dpolE.shape == (542, 2) assert data_cease.shape == (3263, 2) diff --git a/tests/test_wollam/wvase_example_wo_dpolE.dat 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