R version 3.6.1 (2019-07-05) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.3 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] BiocManager_1.30.4 loaded via a namespace (and not attached): [1] compiler_3.6.1 tools_3.6.1 Bioconductor version 3.10 (BiocManager 1.30.4), R 3.6.1 (2019-07-05) antaresProcessing_0.17.0.tar.gz ./antaresProcessing.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/antaresProcessing.Rcheck’ ./antaresProcessing.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./antaresProcessing.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./antaresProcessing.Rcheck/00check.log:* using session charset: UTF-8 ./antaresProcessing.Rcheck/00check.log:* checking for file ‘antaresProcessing/DESCRIPTION’ ... OK ./antaresProcessing.Rcheck/00check.log:* checking extension type ... Package ./antaresProcessing.Rcheck/00check.log:* this is package ‘antaresProcessing’ version ‘0.17.0’ ./antaresProcessing.Rcheck/00check.log:* package encoding: UTF-8 ./antaresProcessing.Rcheck/00check.log:* checking package namespace information ... OK ./antaresProcessing.Rcheck/00check.log:* checking package dependencies ... OK ./antaresProcessing.Rcheck/00check.log:* checking if this is a source package ... OK ./antaresProcessing.Rcheck/00check.log:* checking if there is a namespace ... OK ./antaresProcessing.Rcheck/00check.log:* checking for executable files ... OK ./antaresProcessing.Rcheck/00check.log:* checking for hidden files and directories ... OK ./antaresProcessing.Rcheck/00check.log:* checking for portable file names ... OK ./antaresProcessing.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./antaresProcessing.Rcheck/00check.log:* checking whether package ‘antaresProcessing’ can be installed ... OK ./antaresProcessing.Rcheck/00check.log:* checking installed package size ... OK ./antaresProcessing.Rcheck/00check.log:* checking package directory ... OK ./antaresProcessing.Rcheck/00check.log:* checking ‘build’ directory ... OK ./antaresProcessing.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./antaresProcessing.Rcheck/00check.log:* checking top-level files ... OK ./antaresProcessing.Rcheck/00check.log:* checking for left-over files ... OK ./antaresProcessing.Rcheck/00check.log:* checking index information ... OK ./antaresProcessing.Rcheck/00check.log:* checking package subdirectories ... OK ./antaresProcessing.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./antaresProcessing.Rcheck/00check.log:* checking R files for syntax errors ... OK ./antaresProcessing.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./antaresProcessing.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./antaresProcessing.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./antaresProcessing.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./antaresProcessing.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./antaresProcessing.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./antaresProcessing.Rcheck/00check.log:* checking dependencies in R code ... OK ./antaresProcessing.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./antaresProcessing.Rcheck/00check.log:* checking replacement functions ... OK ./antaresProcessing.Rcheck/00check.log:* checking foreign function calls ... OK ./antaresProcessing.Rcheck/00check.log:* checking R code for possible problems ... OK ./antaresProcessing.Rcheck/00check.log:* checking Rd files ... OK ./antaresProcessing.Rcheck/00check.log:* checking Rd metadata ... OK ./antaresProcessing.Rcheck/00check.log:* checking Rd cross-references ... OK ./antaresProcessing.Rcheck/00check.log:* checking for missing documentation entries ... OK ./antaresProcessing.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./antaresProcessing.Rcheck/00check.log:* checking Rd \usage sections ... OK ./antaresProcessing.Rcheck/00check.log:* checking Rd contents ... OK ./antaresProcessing.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./antaresProcessing.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./antaresProcessing.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./antaresProcessing.Rcheck/00check.log:* checking examples ... OK ./antaresProcessing.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./antaresProcessing.Rcheck/00check.log:* checking tests ... ERROR ./antaresProcessing.Rcheck/00check.log: Running ‘testthat.R’ ./antaresProcessing.Rcheck/00check.log:Running the tests in ‘tests/testthat.R’ failed. ./antaresProcessing.Rcheck/00check.log:Last 13 lines of output: ./antaresProcessing.Rcheck/00check.log: For each time, priceConvergenceArea represent the system without congestion ./antaresProcessing.Rcheck/00check.log: for one area (@test-addConvergencePriceArea.R#39) ./antaresProcessing.Rcheck/00check.log: 3. Error: addConvergencePriceSystem works with an antaresDataList. ./antaresProcessing.Rcheck/00check.log: antaresData must contains areas and links details data with linkCapacity. (@test-addConvergencePriceSystem.R#7) ./antaresProcessing.Rcheck/00check.log: 4. Error: addConvergencePriceSystem add a column priceConvergenceSystem. ./antaresProcessing.Rcheck/00check.log: For each time, priceConvergenceSystem represent the system without congestion (@test-addConvergencePriceSystem.R#41) ./antaresProcessing.Rcheck/00check.log: 5. Error: (unknown) (@test-addDownwardMargin.R#4) ./antaresProcessing.Rcheck/00check.log: 6. Error: (unknown) (@test-addExportAndImport.R#5) ./antaresProcessing.Rcheck/00check.log: 7. Error: addLoadFactorLink: error if links are missings and columns transCapacityDirect, transCapacityIndirect and FLOW LIN. (@test-addLoadFactorLink.R#34) ./antaresProcessing.Rcheck/00check.log: 8. Error: (unknown) (@test-addUpwardMargin.R#13) ./antaresProcessing.Rcheck/00check.log: 9. Error: x and y can be antaresDataList (@test-compare.R#84) ./antaresProcessing.Rcheck/00check.log: 1. ... ./antaresProcessing.Rcheck/00check.log: ./antaresProcessing.Rcheck/00check.log: Error: testthat unit tests failed ./antaresProcessing.Rcheck/00check.log: Execution halted ./antaresProcessing.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./antaresProcessing.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./antaresProcessing.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./antaresProcessing.Rcheck/00check.log: ‘antaresProcessing.Rmd’using ‘UTF-8’... OK ./antaresProcessing.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./antaresProcessing.Rcheck/00check.log:* checking PDF version of manual ... OK ./antaresProcessing.Rcheck/00check.log:* DONE ./antaresProcessing.Rcheck/00check.log:Status: 1 ERROR CoSMoS_1.0.1.tar.gz ./CoSMoS.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/CoSMoS.Rcheck’ ./CoSMoS.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./CoSMoS.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./CoSMoS.Rcheck/00check.log:* using session charset: UTF-8 ./CoSMoS.Rcheck/00check.log:* checking for file ‘CoSMoS/DESCRIPTION’ ... OK ./CoSMoS.Rcheck/00check.log:* checking extension type ... Package ./CoSMoS.Rcheck/00check.log:* this is package ‘CoSMoS’ version ‘1.0.1’ ./CoSMoS.Rcheck/00check.log:* package encoding: UTF-8 ./CoSMoS.Rcheck/00check.log:* checking package namespace information ... OK ./CoSMoS.Rcheck/00check.log:* checking package dependencies ... OK ./CoSMoS.Rcheck/00check.log:* checking if this is a source package ... OK ./CoSMoS.Rcheck/00check.log:* checking if there is a namespace ... OK ./CoSMoS.Rcheck/00check.log:* checking for executable files ... OK ./CoSMoS.Rcheck/00check.log:* checking for hidden files and directories ... OK ./CoSMoS.Rcheck/00check.log:* checking for portable file names ... OK ./CoSMoS.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./CoSMoS.Rcheck/00check.log:* checking whether package ‘CoSMoS’ can be installed ... OK ./CoSMoS.Rcheck/00check.log:* checking installed package size ... OK ./CoSMoS.Rcheck/00check.log:* checking package directory ... OK ./CoSMoS.Rcheck/00check.log:* checking ‘build’ directory ... OK ./CoSMoS.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./CoSMoS.Rcheck/00check.log:* checking top-level files ... OK ./CoSMoS.Rcheck/00check.log:* checking for left-over files ... OK ./CoSMoS.Rcheck/00check.log:* checking index information ... OK ./CoSMoS.Rcheck/00check.log:* checking package subdirectories ... OK ./CoSMoS.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./CoSMoS.Rcheck/00check.log:* checking R files for syntax errors ... OK ./CoSMoS.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./CoSMoS.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./CoSMoS.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./CoSMoS.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./CoSMoS.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./CoSMoS.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./CoSMoS.Rcheck/00check.log:* checking dependencies in R code ... OK ./CoSMoS.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./CoSMoS.Rcheck/00check.log:* checking replacement functions ... OK ./CoSMoS.Rcheck/00check.log:* checking foreign function calls ... OK ./CoSMoS.Rcheck/00check.log:* checking R code for possible problems ... OK ./CoSMoS.Rcheck/00check.log:* checking Rd files ... OK ./CoSMoS.Rcheck/00check.log:* checking Rd metadata ... OK ./CoSMoS.Rcheck/00check.log:* checking Rd cross-references ... OK ./CoSMoS.Rcheck/00check.log:* checking for missing documentation entries ... OK ./CoSMoS.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./CoSMoS.Rcheck/00check.log:* checking Rd \usage sections ... OK ./CoSMoS.Rcheck/00check.log:* checking Rd contents ... OK ./CoSMoS.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./CoSMoS.Rcheck/00check.log:* checking contents of ‘data’ directory ... OK ./CoSMoS.Rcheck/00check.log:* checking data for non-ASCII characters ... OK ./CoSMoS.Rcheck/00check.log:* checking data for ASCII and uncompressed saves ... OK ./CoSMoS.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./CoSMoS.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./CoSMoS.Rcheck/00check.log:* checking examples ... ERROR ./CoSMoS.Rcheck/00check.log:Running examples in ‘CoSMoS-Ex.R’ failed ./CoSMoS.Rcheck/00check.log:The error most likely occurred in: ./CoSMoS.Rcheck/00check.log:> ### Name: analyzeTS ./CoSMoS.Rcheck/00check.log:> ### Title: The Functions analyzeTS, reportTS, and simulateTS ./CoSMoS.Rcheck/00check.log:> ### Aliases: analyzeTS reportTS simulateTS ./CoSMoS.Rcheck/00check.log:> ./CoSMoS.Rcheck/00check.log:> ### ** Examples ./CoSMoS.Rcheck/00check.log:> ./CoSMoS.Rcheck/00check.log:> ./CoSMoS.Rcheck/00check.log:> library(CoSMoS) ./CoSMoS.Rcheck/00check.log:> ./CoSMoS.Rcheck/00check.log:> ## Load data included in the package ./CoSMoS.Rcheck/00check.log:> ## (to find out more about the data use ?precip) ./CoSMoS.Rcheck/00check.log:> data('precip') ./CoSMoS.Rcheck/00check.log:> ## Don't show: ./CoSMoS.Rcheck/00check.log:> ## test for one month to make it fast ./CoSMoS.Rcheck/00check.log:> precip <- precip[between(date, as.POSIXct('1990-1-01', format('%Y-%m-%d'), tz = 'America/Regina'), as.POSIXct('1990-1-5', format('%Y-%m-%d'), tz = 'America/Regina'))] ./CoSMoS.Rcheck/00check.log:Error: 'between' function arguments have mismatched timezone attribute, align all arguments to same timezone ./CoSMoS.Rcheck/00check.log:Execution halted ./CoSMoS.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./CoSMoS.Rcheck/00check.log:* checking tests ... OK ./CoSMoS.Rcheck/00check.log: Running ‘testthat.R’ ./CoSMoS.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./CoSMoS.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./CoSMoS.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./CoSMoS.Rcheck/00check.log: ‘vignette.Rmd’using ‘UTF-8’... OK ./CoSMoS.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./CoSMoS.Rcheck/00check.log:* checking PDF version of manual ... OK ./CoSMoS.Rcheck/00check.log:* DONE ./CoSMoS.Rcheck/00check.log:Status: 1 ERROR grattan_1.7.1.2.tar.gz ./grattan.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/grattan.Rcheck’ ./grattan.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./grattan.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./grattan.Rcheck/00check.log:* using session charset: UTF-8 ./grattan.Rcheck/00check.log:* checking for file ‘grattan/DESCRIPTION’ ... OK ./grattan.Rcheck/00check.log:* checking extension type ... Package ./grattan.Rcheck/00check.log:* this is package ‘grattan’ version ‘1.7.1.2’ ./grattan.Rcheck/00check.log:* package encoding: UTF-8 ./grattan.Rcheck/00check.log:* checking package namespace information ... OK ./grattan.Rcheck/00check.log:* checking package dependencies ... NOTE ./grattan.Rcheck/00check.log:Packages suggested but not available for checking: ./grattan.Rcheck/00check.log: 'taxstats', 'taxstats1516' ./grattan.Rcheck/00check.log:* checking if this is a source package ... OK ./grattan.Rcheck/00check.log:* checking if there is a namespace ... OK ./grattan.Rcheck/00check.log:* checking for executable files ... OK ./grattan.Rcheck/00check.log:* checking for hidden files and directories ... OK ./grattan.Rcheck/00check.log:* checking for portable file names ... OK ./grattan.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./grattan.Rcheck/00check.log:* checking whether package ‘grattan’ can be installed ... WARNING ./grattan.Rcheck/00check.log:Found the following significant warnings: ./grattan.Rcheck/00check.log: Warning: replacing previous import ‘data.table::coalesce’ by ‘hutils::coalesce’ when loading ‘grattan’ ./grattan.Rcheck/00check.log:See ‘/home/mdowle/build/revdeplib/grattan.Rcheck/00install.out’ for details. ./grattan.Rcheck/00check.log:* checking installed package size ... OK ./grattan.Rcheck/00check.log:* checking package directory ... OK ./grattan.Rcheck/00check.log:* checking ‘build’ directory ... OK ./grattan.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./grattan.Rcheck/00check.log:* checking top-level files ... OK ./grattan.Rcheck/00check.log:* checking for left-over files ... OK ./grattan.Rcheck/00check.log:* checking index information ... OK ./grattan.Rcheck/00check.log:* checking package subdirectories ... OK ./grattan.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./grattan.Rcheck/00check.log:* checking R files for syntax errors ... OK ./grattan.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./grattan.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./grattan.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./grattan.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./grattan.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./grattan.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./grattan.Rcheck/00check.log:* checking dependencies in R code ... OK ./grattan.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./grattan.Rcheck/00check.log:* checking replacement functions ... OK ./grattan.Rcheck/00check.log:* checking foreign function calls ... OK ./grattan.Rcheck/00check.log:* checking R code for possible problems ... OK ./grattan.Rcheck/00check.log:* checking Rd files ... OK ./grattan.Rcheck/00check.log:* checking Rd metadata ... OK ./grattan.Rcheck/00check.log:* checking Rd cross-references ... OK ./grattan.Rcheck/00check.log:* checking for missing documentation entries ... OK ./grattan.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./grattan.Rcheck/00check.log:* checking Rd \usage sections ... OK ./grattan.Rcheck/00check.log:* checking Rd contents ... OK ./grattan.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./grattan.Rcheck/00check.log:* checking contents of ‘data’ directory ... OK ./grattan.Rcheck/00check.log:* checking data for non-ASCII characters ... OK ./grattan.Rcheck/00check.log:* checking data for ASCII and uncompressed saves ... OK ./grattan.Rcheck/00check.log:* checking R/sysdata.rda ... OK ./grattan.Rcheck/00check.log:* checking line endings in C/C++/Fortran sources/headers ... OK ./grattan.Rcheck/00check.log:* checking compiled code ... OK ./grattan.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./grattan.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./grattan.Rcheck/00check.log:* checking examples ... OK ./grattan.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./grattan.Rcheck/00check.log:* checking tests ... ERROR ./grattan.Rcheck/00check.log: Running ‘testthat.R’ ./grattan.Rcheck/00check.log:Running the tests in ‘tests/testthat.R’ failed. ./grattan.Rcheck/00check.log:Last 13 lines of output: ./grattan.Rcheck/00check.log: 9: tax_table2[input, roll = Inf] ./grattan.Rcheck/00check.log: 10: `[.data.table`(tax_table2, input, roll = Inf) ./grattan.Rcheck/00check.log: 11: bmerge(i, x, leftcols, rightcols, roll, rollends, nomatch, mult, ops, verbose = verbose) ./grattan.Rcheck/00check.log: 12: stop("Incompatible join types: x.", names(x)[xc], " is type integer but i.", names(i)[ic], ./grattan.Rcheck/00check.log: " is type double and contains fractions") ./grattan.Rcheck/00check.log: ./grattan.Rcheck/00check.log: ══ testthat results ═══════════════════════════════════════════════════════════ ./grattan.Rcheck/00check.log: [ OK: 829 | SKIPPED: 107 | WARNINGS: 0 | FAILED: 2 ] ./grattan.Rcheck/00check.log: 1. Error: Differentially uprated wage growth is *up* (@test_differentially_uprate_wage.R#84) ./grattan.Rcheck/00check.log: 2. Error: income_tax always returns the length of its arguments (@test_incometax_single.R#86) ./grattan.Rcheck/00check.log: ./grattan.Rcheck/00check.log: Error: testthat unit tests failed ./grattan.Rcheck/00check.log: In addition: Warning message: ./grattan.Rcheck/00check.log: replacing previous import 'data.table::coalesce' by 'hutils::coalesce' when loading 'grattan' ./grattan.Rcheck/00check.log: Execution halted ./grattan.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./grattan.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./grattan.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./grattan.Rcheck/00check.log: ‘datatable-implementation.Rmd’using ‘UTF-8’... OK ./grattan.Rcheck/00check.log: ‘grattan.Rmd’using ‘UTF-8’... OK ./grattan.Rcheck/00check.log: ‘model-income-tax.Rmd’using ‘UTF-8’... OK ./grattan.Rcheck/00check.log: ‘v201515-taxstats.Rmd’using ‘UTF-8’... OK ./grattan.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./grattan.Rcheck/00check.log:* checking PDF version of manual ... OK ./grattan.Rcheck/00check.log:* DONE ./grattan.Rcheck/00check.log:Status: 1 ERROR, 1 WARNING, 1 NOTE mlr_2.15.0.tar.gz mlr3_0.1.2.tar.gz mlr3db_0.1.2.tar.gz mlr3filters_0.1.0.tar.gz mlr3learners_0.1.2.tar.gz mlr3misc_0.1.3.tar.gz mlrMBO_1.1.2.tar.gz ./mlr.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/mlr.Rcheck’ ./mlr.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./mlr.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./mlr.Rcheck/00check.log:* using session charset: UTF-8 ./mlr.Rcheck/00check.log:* checking for file ‘mlr/DESCRIPTION’ ... OK ./mlr.Rcheck/00check.log:* this is package ‘mlr’ version ‘2.15.0’ ./mlr.Rcheck/00check.log:* package encoding: UTF-8 ./mlr.Rcheck/00check.log:* checking package namespace information ... OK ./mlr.Rcheck/00check.log:* checking package dependencies ... OK ./mlr.Rcheck/00check.log:* checking if this is a source package ... OK ./mlr.Rcheck/00check.log:* checking if there is a namespace ... OK ./mlr.Rcheck/00check.log:* checking for executable files ... OK ./mlr.Rcheck/00check.log:* checking for hidden files and directories ... OK ./mlr.Rcheck/00check.log:* checking for portable file names ... OK ./mlr.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./mlr.Rcheck/00check.log:* checking whether package ‘mlr’ can be installed ... WARNING ./mlr.Rcheck/00check.log:Found the following significant warnings: ./mlr.Rcheck/00check.log: Warning: replacing previous import ‘BBmisc::coalesce’ by ‘data.table::coalesce’ when loading ‘mlr’ ./mlr.Rcheck/00check.log:See ‘/home/mdowle/build/revdeplib/mlr.Rcheck/00install.out’ for details. ./mlr.Rcheck/00check.log:* checking installed package size ... NOTE ./mlr.Rcheck/00check.log: installed size is 5.5Mb ./mlr.Rcheck/00check.log: sub-directories of 1Mb or more: ./mlr.Rcheck/00check.log: R 1.4Mb ./mlr.Rcheck/00check.log: data 2.3Mb ./mlr.Rcheck/00check.log: help 1.4Mb ./mlr.Rcheck/00check.log:* checking package directory ... OK ./mlr.Rcheck/00check.log:* checking ‘build’ directory ... OK ./mlr.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./mlr.Rcheck/00check.log:* checking top-level files ... OK ./mlr.Rcheck/00check.log:* checking for left-over files ... OK ./mlr.Rcheck/00check.log:* checking index information ... OK ./mlr.Rcheck/00check.log:* checking package subdirectories ... OK ./mlr.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./mlr.Rcheck/00check.log:* checking R files for syntax errors ... OK ./mlr.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./mlr.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./mlr.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./mlr.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./mlr.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./mlr.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./mlr.Rcheck/00check.log:* checking dependencies in R code ... OK ./mlr.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./mlr.Rcheck/00check.log:* checking replacement functions ... OK ./mlr.Rcheck/00check.log:* checking foreign function calls ... OK ./mlr.Rcheck/00check.log:* checking R code for possible problems ... OK ./mlr.Rcheck/00check.log:* checking Rd files ... OK ./mlr.Rcheck/00check.log:* checking Rd metadata ... OK ./mlr.Rcheck/00check.log:* checking Rd cross-references ... OK ./mlr.Rcheck/00check.log:* checking for missing documentation entries ... OK ./mlr.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./mlr.Rcheck/00check.log:* checking Rd \usage sections ... OK ./mlr.Rcheck/00check.log:* checking Rd contents ... OK ./mlr.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./mlr.Rcheck/00check.log:* checking contents of ‘data’ directory ... OK ./mlr.Rcheck/00check.log:* checking data for non-ASCII characters ... OK ./mlr.Rcheck/00check.log:* checking data for ASCII and uncompressed saves ... OK ./mlr.Rcheck/00check.log:* checking line endings in C/C++/Fortran sources/headers ... OK ./mlr.Rcheck/00check.log:* checking compiled code ... OK ./mlr.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./mlr.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./mlr.Rcheck/00check.log:* checking examples ... ERROR ./mlr.Rcheck/00check.log:Running examples in ‘mlr-Ex.R’ failed ./mlr.Rcheck/00check.log:The error most likely occurred in: ./mlr.Rcheck/00check.log:> ### Name: getHyperPars ./mlr.Rcheck/00check.log:> ### Title: Get current parameter settings for a learner. ./mlr.Rcheck/00check.log:> ### Aliases: getHyperPars ./mlr.Rcheck/00check.log:> ./mlr.Rcheck/00check.log:> ### ** Examples ./mlr.Rcheck/00check.log:> ./mlr.Rcheck/00check.log:> getHyperPars(makeLearner("classif.ranger")) ./mlr.Rcheck/00check.log:$num.threads ./mlr.Rcheck/00check.log:[1] 1 ./mlr.Rcheck/00check.log:$verbose ./mlr.Rcheck/00check.log:[1] FALSE ./mlr.Rcheck/00check.log:$respect.unordered.factors ./mlr.Rcheck/00check.log:[1] "order" ./mlr.Rcheck/00check.log:> ./mlr.Rcheck/00check.log:> ## set learner hyperparameter `mtry` manually ./mlr.Rcheck/00check.log:> getHyperPars(makeLearner("classif.ranger", mtry = 100)) ./mlr.Rcheck/00check.log:Error in coalesce(learner$config$on.par.without.desc, getMlrOption("on.par.without.desc")) : ./mlr.Rcheck/00check.log: Item 2 is type character but the first item is type NULL. Please coerce before coalescing. ./mlr.Rcheck/00check.log:Calls: getHyperPars ... setHyperPars -> setHyperPars2 -> setHyperPars2.Learner -> coalesce ./mlr.Rcheck/00check.log:Execution halted ./mlr.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./mlr.Rcheck/00check.log:* checking tests ... OK ./mlr.Rcheck/00check.log: Running ‘run-base.R’ ./mlr.Rcheck/00check.log: Running ‘run-basenocran.R’ ./mlr.Rcheck/00check.log: Running ‘run-classif1.R’ ./mlr.Rcheck/00check.log: Running ‘run-classif2.R’ ./mlr.Rcheck/00check.log: Running ‘run-cluster.R’ ./mlr.Rcheck/00check.log: Running ‘run-featsel.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-classif.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-classiflabelswitch.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-cluster.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-general.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-multilabel.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-regr.R’ ./mlr.Rcheck/00check.log: Running ‘run-learners-surv.R’ ./mlr.Rcheck/00check.log: Running ‘run-lint.R’ ./mlr.Rcheck/00check.log: Running ‘run-multilabel.R’ ./mlr.Rcheck/00check.log: Running ‘run-parallel.R’ ./mlr.Rcheck/00check.log: Running ‘run-regr.R’ ./mlr.Rcheck/00check.log: Running ‘run-stack.R’ ./mlr.Rcheck/00check.log: Running ‘run-surv.R’ ./mlr.Rcheck/00check.log: Running ‘run-tune.R’ ./mlr.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./mlr.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./mlr.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./mlr.Rcheck/00check.log: ‘mlr.Rmd’using ‘UTF-8’... OK ./mlr.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./mlr.Rcheck/00check.log:* checking PDF version of manual ... OK ./mlr.Rcheck/00check.log:* DONE ./mlr.Rcheck/00check.log:Status: 1 ERROR, 1 WARNING, 1 NOTE comorbidity_0.5.0.tar.gz rbi_0.10.2.tar.gz rbi.helpers_0.3.1.tar.gz rbison_0.8.0.tar.gz ./rbi.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/rbi.Rcheck’ ./rbi.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./rbi.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./rbi.Rcheck/00check.log:* using session charset: UTF-8 ./rbi.Rcheck/00check.log:* checking for file ‘rbi/DESCRIPTION’ ... OK ./rbi.Rcheck/00check.log:* this is package ‘rbi’ version ‘0.10.2’ ./rbi.Rcheck/00check.log:* checking package namespace information ... OK ./rbi.Rcheck/00check.log:* checking package dependencies ... OK ./rbi.Rcheck/00check.log:* checking if this is a source package ... OK ./rbi.Rcheck/00check.log:* checking if there is a namespace ... OK ./rbi.Rcheck/00check.log:* checking for executable files ... OK ./rbi.Rcheck/00check.log:* checking for hidden files and directories ... OK ./rbi.Rcheck/00check.log:* checking for portable file names ... OK ./rbi.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./rbi.Rcheck/00check.log:* checking whether package ‘rbi’ can be installed ... OK ./rbi.Rcheck/00check.log:* checking installed package size ... OK ./rbi.Rcheck/00check.log:* checking package directory ... OK ./rbi.Rcheck/00check.log:* checking ‘build’ directory ... OK ./rbi.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./rbi.Rcheck/00check.log:* checking top-level files ... OK ./rbi.Rcheck/00check.log:* checking for left-over files ... OK ./rbi.Rcheck/00check.log:* checking index information ... OK ./rbi.Rcheck/00check.log:* checking package subdirectories ... OK ./rbi.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./rbi.Rcheck/00check.log:* checking R files for syntax errors ... OK ./rbi.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./rbi.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./rbi.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./rbi.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./rbi.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./rbi.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./rbi.Rcheck/00check.log:* checking dependencies in R code ... OK ./rbi.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./rbi.Rcheck/00check.log:* checking replacement functions ... OK ./rbi.Rcheck/00check.log:* checking foreign function calls ... OK ./rbi.Rcheck/00check.log:* checking R code for possible problems ... OK ./rbi.Rcheck/00check.log:* checking Rd files ... OK ./rbi.Rcheck/00check.log:* checking Rd metadata ... OK ./rbi.Rcheck/00check.log:* checking Rd cross-references ... OK ./rbi.Rcheck/00check.log:* checking for missing documentation entries ... OK ./rbi.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./rbi.Rcheck/00check.log:* checking Rd \usage sections ... OK ./rbi.Rcheck/00check.log:* checking Rd contents ... OK ./rbi.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./rbi.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./rbi.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./rbi.Rcheck/00check.log:* checking examples ... OK ./rbi.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./rbi.Rcheck/00check.log:* checking tests ... ERROR ./rbi.Rcheck/00check.log: Running ‘testthat.R’ ./rbi.Rcheck/00check.log:Running the tests in ‘tests/testthat.R’ failed. ./rbi.Rcheck/00check.log:Last 13 lines of output: ./rbi.Rcheck/00check.log: 3: as.data.table.list(x, keep.rownames = keep.rownames, check.names = check.names) ./rbi.Rcheck/00check.log: ./rbi.Rcheck/00check.log: ── 2. Error: saved and re-read libbi object (from folder) functional (@test-io.r ./rbi.Rcheck/00check.log: missing value where TRUE/FALSE needed ./rbi.Rcheck/00check.log: 1: bi_read(bi, clear_cache = TRUE, thin = 10, missval_threshold = 1e+20) at testthat/test-io.r:84 ./rbi.Rcheck/00check.log: 2: data.table::data.table(reshape2::melt(all_values, varnames = dim_var_names)) ./rbi.Rcheck/00check.log: 3: as.data.table.list(x, keep.rownames = keep.rownames, check.names = check.names) ./rbi.Rcheck/00check.log: ./rbi.Rcheck/00check.log: ══ testthat results ═══════════════════════════════════════════════════════════ ./rbi.Rcheck/00check.log: [ OK: 147 | SKIPPED: 6 | WARNINGS: 38 | FAILED: 2 ] ./rbi.Rcheck/00check.log: 1. Error: saved and re-read libbi object functional (@test-io.r#69) ./rbi.Rcheck/00check.log: 2. Error: saved and re-read libbi object (from folder) functional (@test-io.r#84) ./rbi.Rcheck/00check.log: ./rbi.Rcheck/00check.log: Error: testthat unit tests failed ./rbi.Rcheck/00check.log: Execution halted ./rbi.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./rbi.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./rbi.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./rbi.Rcheck/00check.log: ‘introduction.Rmd.rsp’... OK ./rbi.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./rbi.Rcheck/00check.log:* checking PDF version of manual ... OK ./rbi.Rcheck/00check.log:* DONE ./rbi.Rcheck/00check.log:Status: 1 ERROR recorder_0.8.2.tar.gz ./recorder.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/recorder.Rcheck’ ./recorder.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./recorder.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./recorder.Rcheck/00check.log:* using session charset: UTF-8 ./recorder.Rcheck/00check.log:* checking for file ‘recorder/DESCRIPTION’ ... OK ./recorder.Rcheck/00check.log:* this is package ‘recorder’ version ‘0.8.2’ ./recorder.Rcheck/00check.log:* package encoding: UTF-8 ./recorder.Rcheck/00check.log:* checking package namespace information ... OK ./recorder.Rcheck/00check.log:* checking package dependencies ... OK ./recorder.Rcheck/00check.log:* checking if this is a source package ... OK ./recorder.Rcheck/00check.log:* checking if there is a namespace ... OK ./recorder.Rcheck/00check.log:* checking for executable files ... OK ./recorder.Rcheck/00check.log:* checking for hidden files and directories ... OK ./recorder.Rcheck/00check.log:* checking for portable file names ... OK ./recorder.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./recorder.Rcheck/00check.log:* checking whether package ‘recorder’ can be installed ... OK ./recorder.Rcheck/00check.log:* checking installed package size ... OK ./recorder.Rcheck/00check.log:* checking package directory ... OK ./recorder.Rcheck/00check.log:* checking ‘build’ directory ... OK ./recorder.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./recorder.Rcheck/00check.log:* checking top-level files ... OK ./recorder.Rcheck/00check.log:* checking for left-over files ... OK ./recorder.Rcheck/00check.log:* checking index information ... OK ./recorder.Rcheck/00check.log:* checking package subdirectories ... OK ./recorder.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./recorder.Rcheck/00check.log:* checking R files for syntax errors ... OK ./recorder.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./recorder.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./recorder.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./recorder.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./recorder.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./recorder.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./recorder.Rcheck/00check.log:* checking dependencies in R code ... OK ./recorder.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./recorder.Rcheck/00check.log:* checking replacement functions ... OK ./recorder.Rcheck/00check.log:* checking foreign function calls ... OK ./recorder.Rcheck/00check.log:* checking R code for possible problems ... OK ./recorder.Rcheck/00check.log:* checking Rd files ... OK ./recorder.Rcheck/00check.log:* checking Rd metadata ... OK ./recorder.Rcheck/00check.log:* checking Rd cross-references ... OK ./recorder.Rcheck/00check.log:* checking for missing documentation entries ... OK ./recorder.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./recorder.Rcheck/00check.log:* checking Rd \usage sections ... OK ./recorder.Rcheck/00check.log:* checking Rd contents ... OK ./recorder.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./recorder.Rcheck/00check.log:* checking contents of ‘data’ directory ... OK ./recorder.Rcheck/00check.log:* checking data for non-ASCII characters ... OK ./recorder.Rcheck/00check.log:* checking data for ASCII and uncompressed saves ... OK ./recorder.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./recorder.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./recorder.Rcheck/00check.log:* checking examples ... OK ./recorder.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./recorder.Rcheck/00check.log:* checking tests ... ERROR ./recorder.Rcheck/00check.log: Running ‘testthat.R’ ./recorder.Rcheck/00check.log:Running the tests in ‘tests/testthat.R’ failed. ./recorder.Rcheck/00check.log:Complete output: ./recorder.Rcheck/00check.log: > library(testthat) ./recorder.Rcheck/00check.log: > library(recorder) ./recorder.Rcheck/00check.log: > ./recorder.Rcheck/00check.log: > test_check(package = "recorder") ./recorder.Rcheck/00check.log: ── 1. Failure: (unknown) (@test_get_failed_tests.R#25) ──────────────────────── ./recorder.Rcheck/00check.log: "new_NA.Petal.Width" %in% names(results) isn't true. ./recorder.Rcheck/00check.log: ./recorder.Rcheck/00check.log: ══ testthat results ═══════════════════════════════════════════════════════════ ./recorder.Rcheck/00check.log: [ OK: 84 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] ./recorder.Rcheck/00check.log: 1. Failure: (unknown) (@test_get_failed_tests.R#25) ./recorder.Rcheck/00check.log: ./recorder.Rcheck/00check.log: Error: testthat unit tests failed ./recorder.Rcheck/00check.log: Execution halted ./recorder.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./recorder.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./recorder.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./recorder.Rcheck/00check.log: ‘recorder.Rmd’using ‘UTF-8’... OK ./recorder.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./recorder.Rcheck/00check.log:* checking PDF version of manual ... OK ./recorder.Rcheck/00check.log:* DONE ./recorder.Rcheck/00check.log:Status: 1 ERROR tcpl_2.0.2.tar.gz ./tcpl.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/tcpl.Rcheck’ ./tcpl.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./tcpl.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./tcpl.Rcheck/00check.log:* using session charset: UTF-8 ./tcpl.Rcheck/00check.log:* checking for file ‘tcpl/DESCRIPTION’ ... OK ./tcpl.Rcheck/00check.log:* this is package ‘tcpl’ version ‘2.0.2’ ./tcpl.Rcheck/00check.log:* package encoding: UTF-8 ./tcpl.Rcheck/00check.log:* checking package namespace information ... OK ./tcpl.Rcheck/00check.log:* checking package dependencies ... OK ./tcpl.Rcheck/00check.log:* checking if this is a source package ... OK ./tcpl.Rcheck/00check.log:* checking if there is a namespace ... OK ./tcpl.Rcheck/00check.log:* checking for executable files ... OK ./tcpl.Rcheck/00check.log:* checking for hidden files and directories ... OK ./tcpl.Rcheck/00check.log:* checking for portable file names ... OK ./tcpl.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./tcpl.Rcheck/00check.log:* checking whether package ‘tcpl’ can be installed ... OK ./tcpl.Rcheck/00check.log:* checking installed package size ... OK ./tcpl.Rcheck/00check.log:* checking package directory ... OK ./tcpl.Rcheck/00check.log:* checking ‘build’ directory ... OK ./tcpl.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./tcpl.Rcheck/00check.log:* checking top-level files ... OK ./tcpl.Rcheck/00check.log:* checking for left-over files ... OK ./tcpl.Rcheck/00check.log:* checking index information ... OK ./tcpl.Rcheck/00check.log:* checking package subdirectories ... OK ./tcpl.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./tcpl.Rcheck/00check.log:* checking R files for syntax errors ... OK ./tcpl.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./tcpl.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./tcpl.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./tcpl.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./tcpl.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./tcpl.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./tcpl.Rcheck/00check.log:* checking dependencies in R code ... OK ./tcpl.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./tcpl.Rcheck/00check.log:* checking replacement functions ... OK ./tcpl.Rcheck/00check.log:* checking foreign function calls ... OK ./tcpl.Rcheck/00check.log:* checking R code for possible problems ... OK ./tcpl.Rcheck/00check.log:* checking Rd files ... OK ./tcpl.Rcheck/00check.log:* checking Rd metadata ... OK ./tcpl.Rcheck/00check.log:* checking Rd cross-references ... OK ./tcpl.Rcheck/00check.log:* checking for missing documentation entries ... OK ./tcpl.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./tcpl.Rcheck/00check.log:* checking Rd \usage sections ... OK ./tcpl.Rcheck/00check.log:* checking Rd contents ... OK ./tcpl.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./tcpl.Rcheck/00check.log:* checking contents of ‘data’ directory ... OK ./tcpl.Rcheck/00check.log:* checking data for non-ASCII characters ... OK ./tcpl.Rcheck/00check.log:* checking data for ASCII and uncompressed saves ... OK ./tcpl.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./tcpl.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./tcpl.Rcheck/00check.log:* checking examples ... ERROR ./tcpl.Rcheck/00check.log:Running examples in ‘tcpl-Ex.R’ failed ./tcpl.Rcheck/00check.log:The error most likely occurred in: ./tcpl.Rcheck/00check.log:> ### Name: tcplPrepOtpt ./tcpl.Rcheck/00check.log:> ### Title: Map assay/chemical ID values to annotation information ./tcpl.Rcheck/00check.log:> ### Aliases: tcplPrepOtpt ./tcpl.Rcheck/00check.log:> ./tcpl.Rcheck/00check.log:> ### ** Examples ./tcpl.Rcheck/00check.log:> ./tcpl.Rcheck/00check.log:> ./tcpl.Rcheck/00check.log:> ## Store the current config settings, so they can be reloaded at the end ./tcpl.Rcheck/00check.log:> ## of the examples ./tcpl.Rcheck/00check.log:> conf_store <- tcplConfList() ./tcpl.Rcheck/00check.log:> tcplConfExample() ./tcpl.Rcheck/00check.log:> ./tcpl.Rcheck/00check.log:> ## Load some example data ./tcpl.Rcheck/00check.log:> d1 <- tcplLoadData(1) ./tcpl.Rcheck/00check.log:> ./tcpl.Rcheck/00check.log:> ## Check for chemical name in 'dat' ./tcpl.Rcheck/00check.log:> "chnm" %in% names(d1) ## FALSE ./tcpl.Rcheck/00check.log:[1] FALSE ./tcpl.Rcheck/00check.log:> ./tcpl.Rcheck/00check.log:> #' ## Map all annotations ./tcpl.Rcheck/00check.log:> d2 <- tcplPrepOtpt(d1) ## ./tcpl.Rcheck/00check.log:Error in bmerge(i, x, leftcols, rightcols, roll, rollends, nomatch, mult, : ./tcpl.Rcheck/00check.log: Incompatible join types: x.acid (integer) and i.acid (logical) ./tcpl.Rcheck/00check.log:Calls: tcplPrepOtpt ... merge -> merge.data.table -> [ -> [.data.table -> bmerge ./tcpl.Rcheck/00check.log:Execution halted ./tcpl.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./tcpl.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./tcpl.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./tcpl.Rcheck/00check.log: ‘Data_processing.Rmd’using ‘UTF-8’... OK ./tcpl.Rcheck/00check.log: ‘Data_retrieval.Rmd’using ‘UTF-8’... OK ./tcpl.Rcheck/00check.log: ‘Introduction_Appendices.Rmd’using ‘UTF-8’... OK ./tcpl.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./tcpl.Rcheck/00check.log:* checking PDF version of manual ... OK ./tcpl.Rcheck/00check.log:* DONE ./tcpl.Rcheck/00check.log:Status: 1 ERROR trackdf_0.2.1.tar.gz ./trackdf.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/trackdf.Rcheck’ ./trackdf.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./trackdf.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./trackdf.Rcheck/00check.log:* using session charset: UTF-8 ./trackdf.Rcheck/00check.log:* checking for file ‘trackdf/DESCRIPTION’ ... OK ./trackdf.Rcheck/00check.log:* checking extension type ... Package ./trackdf.Rcheck/00check.log:* this is package ‘trackdf’ version ‘0.2.1’ ./trackdf.Rcheck/00check.log:* package encoding: UTF-8 ./trackdf.Rcheck/00check.log:* checking package namespace information ... OK ./trackdf.Rcheck/00check.log:* checking package dependencies ... NOTE ./trackdf.Rcheck/00check.log:Package suggested but not available for checking: ‘moveVis’ ./trackdf.Rcheck/00check.log:* checking if this is a source package ... OK ./trackdf.Rcheck/00check.log:* checking if there is a namespace ... OK ./trackdf.Rcheck/00check.log:* checking for executable files ... OK ./trackdf.Rcheck/00check.log:* checking for hidden files and directories ... OK ./trackdf.Rcheck/00check.log:* checking for portable file names ... OK ./trackdf.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./trackdf.Rcheck/00check.log:* checking whether package ‘trackdf’ can be installed ... OK ./trackdf.Rcheck/00check.log:* checking installed package size ... OK ./trackdf.Rcheck/00check.log:* checking package directory ... OK ./trackdf.Rcheck/00check.log:* checking ‘build’ directory ... OK ./trackdf.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./trackdf.Rcheck/00check.log:* checking top-level files ... OK ./trackdf.Rcheck/00check.log:* checking for left-over files ... OK ./trackdf.Rcheck/00check.log:* checking index information ... OK ./trackdf.Rcheck/00check.log:* checking package subdirectories ... OK ./trackdf.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./trackdf.Rcheck/00check.log:* checking R files for syntax errors ... OK ./trackdf.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./trackdf.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./trackdf.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./trackdf.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./trackdf.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./trackdf.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./trackdf.Rcheck/00check.log:* checking dependencies in R code ... NOTE ./trackdf.Rcheck/00check.log:Namespace in Imports field not imported from: ‘rgdal’ ./trackdf.Rcheck/00check.log: All declared Imports should be used. ./trackdf.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./trackdf.Rcheck/00check.log:* checking replacement functions ... OK ./trackdf.Rcheck/00check.log:* checking foreign function calls ... OK ./trackdf.Rcheck/00check.log:* checking R code for possible problems ... OK ./trackdf.Rcheck/00check.log:* checking Rd files ... OK ./trackdf.Rcheck/00check.log:* checking Rd metadata ... OK ./trackdf.Rcheck/00check.log:* checking Rd cross-references ... NOTE ./trackdf.Rcheck/00check.log:Package unavailable to check Rd xrefs: ‘moveVis’ ./trackdf.Rcheck/00check.log:* checking for missing documentation entries ... OK ./trackdf.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./trackdf.Rcheck/00check.log:* checking Rd \usage sections ... OK ./trackdf.Rcheck/00check.log:* checking Rd contents ... OK ./trackdf.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./trackdf.Rcheck/00check.log:* checking contents of ‘data’ directory ... OK ./trackdf.Rcheck/00check.log:* checking data for non-ASCII characters ... OK ./trackdf.Rcheck/00check.log:* checking data for ASCII and uncompressed saves ... OK ./trackdf.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./trackdf.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./trackdf.Rcheck/00check.log:* checking examples ... ERROR ./trackdf.Rcheck/00check.log:Running examples in ‘trackdf-Ex.R’ failed ./trackdf.Rcheck/00check.log:The error most likely occurred in: ./trackdf.Rcheck/00check.log:> ### Name: conversions ./trackdf.Rcheck/00check.log:> ### Title: Convert a Track Table to/from Other Formats ./trackdf.Rcheck/00check.log:> ### Aliases: conversions as_track as_track.MoveStack as_track.Move as_move ./trackdf.Rcheck/00check.log:> ### as_move.track as_track.SpatialPointsDataFrame as_sp as_sp.track ./trackdf.Rcheck/00check.log:> ### as_track.ltraj as_ltraj as_ltraj.track as_track.telemetry ./trackdf.Rcheck/00check.log:> ### as_track.list as_telemetry as_telemetry.track as_track.moveData ./trackdf.Rcheck/00check.log:> ### as_moveHMM as_moveHMM.track ./trackdf.Rcheck/00check.log:> ./trackdf.Rcheck/00check.log:> ### ** Examples ./trackdf.Rcheck/00check.log:> ./trackdf.Rcheck/00check.log:> data(short_tracks) ./trackdf.Rcheck/00check.log:> ./trackdf.Rcheck/00check.log:> if (requireNamespace("moveVis", quietly = TRUE)) { ./trackdf.Rcheck/00check.log:+ mv <- as_move(short_tracks) ./trackdf.Rcheck/00check.log:+ as_track(mv) ./trackdf.Rcheck/00check.log:+ } ./trackdf.Rcheck/00check.log:> ./trackdf.Rcheck/00check.log:> if (requireNamespace("sp", quietly = TRUE)) { ./trackdf.Rcheck/00check.log:+ sp <- as_sp(short_tracks) ./trackdf.Rcheck/00check.log:+ as_track(sp) ./trackdf.Rcheck/00check.log:+ } ./trackdf.Rcheck/00check.log:Track table [120 observations] ./trackdf.Rcheck/00check.log:Number of tracks: 2 ./trackdf.Rcheck/00check.log:Dimensions: 2D ./trackdf.Rcheck/00check.log:Geographic: TRUE ./trackdf.Rcheck/00check.log:Projection: +proj=longlat +ellps=WGS84 ./trackdf.Rcheck/00check.log:Table class: data frame ./trackdf.Rcheck/00check.log: id t x y ./trackdf.Rcheck/00check.log:1 1 2015-09-10 07:01:00 15.76468 -22.37961 ./trackdf.Rcheck/00check.log:2 1 2015-09-10 07:01:01 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:3 1 2015-09-10 07:01:02 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:4 1 2015-09-10 07:01:03 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:5 1 2015-09-10 07:01:04 15.76470 -22.37960 ./trackdf.Rcheck/00check.log:6 1 2015-09-10 07:01:05 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:7 1 2015-09-10 07:01:06 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:8 1 2015-09-10 07:01:07 15.76469 -22.37959 ./trackdf.Rcheck/00check.log:9 1 2015-09-10 07:01:08 15.76469 -22.37959 ./trackdf.Rcheck/00check.log:10 1 2015-09-10 07:01:09 15.76469 -22.37959 ./trackdf.Rcheck/00check.log:11 1 2015-09-10 07:01:10 15.76469 -22.37959 ./trackdf.Rcheck/00check.log:12 1 2015-09-10 07:01:11 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:13 1 2015-09-10 07:01:12 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:14 1 2015-09-10 07:01:13 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:15 1 2015-09-10 07:01:14 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:16 1 2015-09-10 07:01:15 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:17 1 2015-09-10 07:01:16 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:18 1 2015-09-10 07:01:17 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:19 1 2015-09-10 07:01:18 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:20 1 2015-09-10 07:01:19 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:21 1 2015-09-10 07:01:20 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:22 1 2015-09-10 07:01:21 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:23 1 2015-09-10 07:01:22 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:24 1 2015-09-10 07:01:23 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:25 1 2015-09-10 07:01:24 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:26 1 2015-09-10 07:01:25 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:27 1 2015-09-10 07:01:26 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:28 1 2015-09-10 07:01:27 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:29 1 2015-09-10 07:01:28 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:30 1 2015-09-10 07:01:29 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:31 1 2015-09-10 07:01:30 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:32 1 2015-09-10 07:01:31 15.76468 -22.37960 ./trackdf.Rcheck/00check.log:33 1 2015-09-10 07:01:32 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:34 1 2015-09-10 07:01:33 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:35 1 2015-09-10 07:01:34 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:36 1 2015-09-10 07:01:35 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:37 1 2015-09-10 07:01:36 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:38 1 2015-09-10 07:01:37 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:39 1 2015-09-10 07:01:38 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:40 1 2015-09-10 07:01:39 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:41 1 2015-09-10 07:01:40 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:42 1 2015-09-10 07:01:41 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:43 1 2015-09-10 07:01:42 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:44 1 2015-09-10 07:01:43 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:45 1 2015-09-10 07:01:44 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:46 1 2015-09-10 07:01:45 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:47 1 2015-09-10 07:01:46 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:48 1 2015-09-10 07:01:47 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:49 1 2015-09-10 07:01:48 15.76469 -22.37960 ./trackdf.Rcheck/00check.log:50 1 2015-09-10 07:01:49 15.76469 -22.37959 ./trackdf.Rcheck/00check.log:51 1 2015-09-10 07:01:50 15.76469 -22.37959 ./trackdf.Rcheck/00check.log:52 1 2015-09-10 07:01:51 15.76470 -22.37959 ./trackdf.Rcheck/00check.log:53 1 2015-09-10 07:01:52 15.76470 -22.37959 ./trackdf.Rcheck/00check.log:54 1 2015-09-10 07:01:53 15.76470 -22.37959 ./trackdf.Rcheck/00check.log:55 1 2015-09-10 07:01:54 15.76470 -22.37960 ./trackdf.Rcheck/00check.log:56 1 2015-09-10 07:01:55 15.76470 -22.37960 ./trackdf.Rcheck/00check.log:57 1 2015-09-10 07:01:56 15.76471 -22.37960 ./trackdf.Rcheck/00check.log:58 1 2015-09-10 07:01:57 15.76471 -22.37959 ./trackdf.Rcheck/00check.log:59 1 2015-09-10 07:01:58 15.76471 -22.37959 ./trackdf.Rcheck/00check.log:60 1 2015-09-10 07:01:59 15.76471 -22.37959 ./trackdf.Rcheck/00check.log:61 2 2015-09-10 07:01:00 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:62 2 2015-09-10 07:01:01 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:63 2 2015-09-10 07:01:02 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:64 2 2015-09-10 07:01:03 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:65 2 2015-09-10 07:01:04 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:66 2 2015-09-10 07:01:05 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:67 2 2015-09-10 07:01:06 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:68 2 2015-09-10 07:01:07 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:69 2 2015-09-10 07:01:08 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:70 2 2015-09-10 07:01:09 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:71 2 2015-09-10 07:01:10 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:72 2 2015-09-10 07:01:11 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:73 2 2015-09-10 07:01:12 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:74 2 2015-09-10 07:01:13 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:75 2 2015-09-10 07:01:14 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:76 2 2015-09-10 07:01:15 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:77 2 2015-09-10 07:01:16 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:78 2 2015-09-10 07:01:17 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:79 2 2015-09-10 07:01:18 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:80 2 2015-09-10 07:01:19 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:81 2 2015-09-10 07:01:20 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:82 2 2015-09-10 07:01:21 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:83 2 2015-09-10 07:01:22 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:84 2 2015-09-10 07:01:23 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:85 2 2015-09-10 07:01:24 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:86 2 2015-09-10 07:01:25 15.76458 -22.37971 ./trackdf.Rcheck/00check.log:87 2 2015-09-10 07:01:26 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:88 2 2015-09-10 07:01:27 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:89 2 2015-09-10 07:01:28 15.76459 -22.37971 ./trackdf.Rcheck/00check.log:90 2 2015-09-10 07:01:29 15.76458 -22.37971 ./trackdf.Rcheck/00check.log:91 2 2015-09-10 07:01:30 15.76458 -22.37971 ./trackdf.Rcheck/00check.log:92 2 2015-09-10 07:01:31 15.76457 -22.37971 ./trackdf.Rcheck/00check.log:93 2 2015-09-10 07:01:32 15.76456 -22.37971 ./trackdf.Rcheck/00check.log:94 2 2015-09-10 07:01:33 15.76455 -22.37972 ./trackdf.Rcheck/00check.log:95 2 2015-09-10 07:01:34 15.76455 -22.37972 ./trackdf.Rcheck/00check.log:96 2 2015-09-10 07:01:35 15.76455 -22.37973 ./trackdf.Rcheck/00check.log:97 2 2015-09-10 07:01:36 15.76455 -22.37973 ./trackdf.Rcheck/00check.log:98 2 2015-09-10 07:01:37 15.76455 -22.37974 ./trackdf.Rcheck/00check.log:99 2 2015-09-10 07:01:38 15.76455 -22.37974 ./trackdf.Rcheck/00check.log:100 2 2015-09-10 07:01:39 15.76455 -22.37975 ./trackdf.Rcheck/00check.log:101 2 2015-09-10 07:01:40 15.76455 -22.37975 ./trackdf.Rcheck/00check.log:102 2 2015-09-10 07:01:41 15.76454 -22.37976 ./trackdf.Rcheck/00check.log:103 2 2015-09-10 07:01:42 15.76455 -22.37976 ./trackdf.Rcheck/00check.log:104 2 2015-09-10 07:01:43 15.76455 -22.37976 ./trackdf.Rcheck/00check.log:105 2 2015-09-10 07:01:44 15.76455 -22.37977 ./trackdf.Rcheck/00check.log:106 2 2015-09-10 07:01:45 15.76456 -22.37977 ./trackdf.Rcheck/00check.log:107 2 2015-09-10 07:01:46 15.76457 -22.37978 ./trackdf.Rcheck/00check.log:108 2 2015-09-10 07:01:47 15.76458 -22.37978 ./trackdf.Rcheck/00check.log:109 2 2015-09-10 07:01:48 15.76459 -22.37979 ./trackdf.Rcheck/00check.log:110 2 2015-09-10 07:01:49 15.76459 -22.37979 ./trackdf.Rcheck/00check.log:111 2 2015-09-10 07:01:50 15.76460 -22.37980 ./trackdf.Rcheck/00check.log:112 2 2015-09-10 07:01:51 15.76461 -22.37980 ./trackdf.Rcheck/00check.log:113 2 2015-09-10 07:01:52 15.76461 -22.37981 ./trackdf.Rcheck/00check.log:114 2 2015-09-10 07:01:53 15.76461 -22.37981 ./trackdf.Rcheck/00check.log:115 2 2015-09-10 07:01:54 15.76462 -22.37981 ./trackdf.Rcheck/00check.log:116 2 2015-09-10 07:01:55 15.76463 -22.37982 ./trackdf.Rcheck/00check.log:117 2 2015-09-10 07:01:56 15.76463 -22.37982 ./trackdf.Rcheck/00check.log:118 2 2015-09-10 07:01:57 15.76464 -22.37982 ./trackdf.Rcheck/00check.log:119 2 2015-09-10 07:01:58 15.76465 -22.37982 ./trackdf.Rcheck/00check.log:120 2 2015-09-10 07:01:59 15.76466 -22.37982 ./trackdf.Rcheck/00check.log:> ./trackdf.Rcheck/00check.log:> if (requireNamespace("adehabitatLT", quietly = TRUE)) { ./trackdf.Rcheck/00check.log:+ lt <- as_ltraj(short_tracks) ./trackdf.Rcheck/00check.log:+ as_track(lt) ./trackdf.Rcheck/00check.log:+ } ./trackdf.Rcheck/00check.log:Error in data.table::rbindlist(x, idcol = "id") : ./trackdf.Rcheck/00check.log: Input is ltraj but should be a plain list of items to be stacked ./trackdf.Rcheck/00check.log:Calls: as_track -> as_track.ltraj -> ./trackdf.Rcheck/00check.log:Execution halted ./trackdf.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./trackdf.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./trackdf.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./trackdf.Rcheck/00check.log: ‘z1_install.Rmd’using ‘UTF-8’... OK ./trackdf.Rcheck/00check.log: ‘z2_build.Rmd’using ‘UTF-8’... OK ./trackdf.Rcheck/00check.log: ‘z3_manipulate.Rmd’using ‘UTF-8’... OK ./trackdf.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./trackdf.Rcheck/00check.log:* checking PDF version of manual ... OK ./trackdf.Rcheck/00check.log:* DONE ./trackdf.Rcheck/00check.log:Status: 1 ERROR, 3 NOTEs OpenML_1.9.tar.gz ./OpenML.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/OpenML.Rcheck’ ./OpenML.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./OpenML.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./OpenML.Rcheck/00check.log:* using session charset: UTF-8 ./OpenML.Rcheck/00check.log:* checking for file ‘OpenML/DESCRIPTION’ ... OK ./OpenML.Rcheck/00check.log:* this is package ‘OpenML’ version ‘1.9’ ./OpenML.Rcheck/00check.log:* package encoding: UTF-8 ./OpenML.Rcheck/00check.log:* checking package namespace information ... OK ./OpenML.Rcheck/00check.log:* checking package dependencies ... OK ./OpenML.Rcheck/00check.log:* checking if this is a source package ... OK ./OpenML.Rcheck/00check.log:* checking if there is a namespace ... OK ./OpenML.Rcheck/00check.log:* checking for executable files ... OK ./OpenML.Rcheck/00check.log:* checking for hidden files and directories ... OK ./OpenML.Rcheck/00check.log:* checking for portable file names ... OK ./OpenML.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./OpenML.Rcheck/00check.log:* checking whether package ‘OpenML’ can be installed ... WARNING ./OpenML.Rcheck/00check.log:Found the following significant warnings: ./OpenML.Rcheck/00check.log: Warning: replacing previous import ‘BBmisc::coalesce’ by ‘data.table::coalesce’ when loading ‘OpenML’ ./OpenML.Rcheck/00check.log:See ‘/home/mdowle/build/revdeplib/OpenML.Rcheck/00install.out’ for details. ./OpenML.Rcheck/00check.log:* checking installed package size ... OK ./OpenML.Rcheck/00check.log:* checking package directory ... OK ./OpenML.Rcheck/00check.log:* checking ‘build’ directory ... OK ./OpenML.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./OpenML.Rcheck/00check.log:* checking top-level files ... OK ./OpenML.Rcheck/00check.log:* checking for left-over files ... OK ./OpenML.Rcheck/00check.log:* checking index information ... OK ./OpenML.Rcheck/00check.log:* checking package subdirectories ... OK ./OpenML.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./OpenML.Rcheck/00check.log:* checking R files for syntax errors ... OK ./OpenML.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./OpenML.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./OpenML.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./OpenML.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./OpenML.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./OpenML.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./OpenML.Rcheck/00check.log:* checking dependencies in R code ... OK ./OpenML.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./OpenML.Rcheck/00check.log:* checking replacement functions ... OK ./OpenML.Rcheck/00check.log:* checking foreign function calls ... OK ./OpenML.Rcheck/00check.log:* checking R code for possible problems ... OK ./OpenML.Rcheck/00check.log:* checking Rd files ... OK ./OpenML.Rcheck/00check.log:* checking Rd metadata ... OK ./OpenML.Rcheck/00check.log:* checking Rd cross-references ... OK ./OpenML.Rcheck/00check.log:* checking for missing documentation entries ... OK ./OpenML.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./OpenML.Rcheck/00check.log:* checking Rd \usage sections ... OK ./OpenML.Rcheck/00check.log:* checking Rd contents ... OK ./OpenML.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./OpenML.Rcheck/00check.log:* checking sizes of PDF files under ‘inst/doc’ ... OK ./OpenML.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./OpenML.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./OpenML.Rcheck/00check.log:* checking examples ... OK ./OpenML.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./OpenML.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./OpenML.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./OpenML.Rcheck/00check.log: ‘OpenML.html.asis’using ‘UTF-8’... OK ./OpenML.Rcheck/00check.log: ‘openml-cheatsheet.pdf.asis’using ‘UTF-8’... OK ./OpenML.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./OpenML.Rcheck/00check.log:* checking PDF version of manual ... OK ./OpenML.Rcheck/00check.log:* DONE ./OpenML.Rcheck/00check.log:Status: 1 WARNING vosonSML_0.27.2.tar.gz ./vosonSML.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/vosonSML.Rcheck’ ./vosonSML.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./vosonSML.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./vosonSML.Rcheck/00check.log:* using session charset: UTF-8 ./vosonSML.Rcheck/00check.log:* checking for file ‘vosonSML/DESCRIPTION’ ... OK ./vosonSML.Rcheck/00check.log:* checking extension type ... Package ./vosonSML.Rcheck/00check.log:* this is package ‘vosonSML’ version ‘0.27.2’ ./vosonSML.Rcheck/00check.log:* package encoding: UTF-8 ./vosonSML.Rcheck/00check.log:* checking package namespace information ... OK ./vosonSML.Rcheck/00check.log:* checking package dependencies ... OK ./vosonSML.Rcheck/00check.log:* checking if this is a source package ... OK ./vosonSML.Rcheck/00check.log:* checking if there is a namespace ... OK ./vosonSML.Rcheck/00check.log:* checking for executable files ... OK ./vosonSML.Rcheck/00check.log:* checking for hidden files and directories ... OK ./vosonSML.Rcheck/00check.log:* checking for portable file names ... OK ./vosonSML.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./vosonSML.Rcheck/00check.log:* checking whether package ‘vosonSML’ can be installed ... WARNING ./vosonSML.Rcheck/00check.log:Found the following significant warnings: ./vosonSML.Rcheck/00check.log: Warning: replacing previous import ‘data.table::coalesce’ by ‘dplyr::coalesce’ when loading ‘vosonSML’ ./vosonSML.Rcheck/00check.log:See ‘/home/mdowle/build/revdeplib/vosonSML.Rcheck/00install.out’ for details. ./vosonSML.Rcheck/00check.log:* checking installed package size ... OK ./vosonSML.Rcheck/00check.log:* checking package directory ... OK ./vosonSML.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./vosonSML.Rcheck/00check.log:* checking top-level files ... OK ./vosonSML.Rcheck/00check.log:* checking for left-over files ... OK ./vosonSML.Rcheck/00check.log:* checking index information ... OK ./vosonSML.Rcheck/00check.log:* checking package subdirectories ... OK ./vosonSML.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./vosonSML.Rcheck/00check.log:* checking R files for syntax errors ... OK ./vosonSML.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./vosonSML.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./vosonSML.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./vosonSML.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./vosonSML.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./vosonSML.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./vosonSML.Rcheck/00check.log:* checking dependencies in R code ... OK ./vosonSML.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./vosonSML.Rcheck/00check.log:* checking replacement functions ... OK ./vosonSML.Rcheck/00check.log:* checking foreign function calls ... OK ./vosonSML.Rcheck/00check.log:* checking R code for possible problems ... OK ./vosonSML.Rcheck/00check.log:* checking Rd files ... OK ./vosonSML.Rcheck/00check.log:* checking Rd metadata ... OK ./vosonSML.Rcheck/00check.log:* checking Rd cross-references ... OK ./vosonSML.Rcheck/00check.log:* checking for missing documentation entries ... OK ./vosonSML.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./vosonSML.Rcheck/00check.log:* checking Rd \usage sections ... OK ./vosonSML.Rcheck/00check.log:* checking Rd contents ... OK ./vosonSML.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./vosonSML.Rcheck/00check.log:* checking examples ... OK ./vosonSML.Rcheck/00check.log:* checking PDF version of manual ... OK ./vosonSML.Rcheck/00check.log:* DONE ./vosonSML.Rcheck/00check.log:Status: 1 WARNING