R version 3.6.1 (2019-07-05) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.3 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] BiocManager_1.30.4 loaded via a namespace (and not attached): [1] compiler_3.6.1 tools_3.6.1 NNS_0.4.5.tar.gz ./NNS.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/NNS.Rcheck’ ./NNS.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./NNS.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./NNS.Rcheck/00check.log:* using session charset: UTF-8 ./NNS.Rcheck/00check.log:* checking for file ‘NNS/DESCRIPTION’ ... OK ./NNS.Rcheck/00check.log:* checking extension type ... Package ./NNS.Rcheck/00check.log:* this is package ‘NNS’ version ‘0.4.5’ ./NNS.Rcheck/00check.log:* checking package namespace information ... OK ./NNS.Rcheck/00check.log:* checking package dependencies ... OK ./NNS.Rcheck/00check.log:* checking if this is a source package ... OK ./NNS.Rcheck/00check.log:* checking if there is a namespace ... OK ./NNS.Rcheck/00check.log:* checking for executable files ... OK ./NNS.Rcheck/00check.log:* checking for hidden files and directories ... OK ./NNS.Rcheck/00check.log:* checking for portable file names ... OK ./NNS.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./NNS.Rcheck/00check.log:* checking whether package ‘NNS’ can be installed ... OK ./NNS.Rcheck/00check.log:* checking installed package size ... OK ./NNS.Rcheck/00check.log:* checking package directory ... OK ./NNS.Rcheck/00check.log:* checking ‘build’ directory ... OK ./NNS.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./NNS.Rcheck/00check.log:* checking top-level files ... OK ./NNS.Rcheck/00check.log:* checking for left-over files ... OK ./NNS.Rcheck/00check.log:* checking index information ... OK ./NNS.Rcheck/00check.log:* checking package subdirectories ... OK ./NNS.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./NNS.Rcheck/00check.log:* checking R files for syntax errors ... OK ./NNS.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./NNS.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./NNS.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./NNS.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./NNS.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./NNS.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./NNS.Rcheck/00check.log:* checking dependencies in R code ... OK ./NNS.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./NNS.Rcheck/00check.log:* checking replacement functions ... OK ./NNS.Rcheck/00check.log:* checking foreign function calls ... OK ./NNS.Rcheck/00check.log:* checking R code for possible problems ... OK ./NNS.Rcheck/00check.log:* checking Rd files ... OK ./NNS.Rcheck/00check.log:* checking Rd metadata ... OK ./NNS.Rcheck/00check.log:* checking Rd cross-references ... OK ./NNS.Rcheck/00check.log:* checking for missing documentation entries ... OK ./NNS.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./NNS.Rcheck/00check.log:* checking Rd \usage sections ... OK ./NNS.Rcheck/00check.log:* checking Rd contents ... OK ./NNS.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./NNS.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./NNS.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./NNS.Rcheck/00check.log:* checking examples ... ERROR ./NNS.Rcheck/00check.log:Running examples in ‘NNS-Ex.R’ failed ./NNS.Rcheck/00check.log:The error most likely occurred in: ./NNS.Rcheck/00check.log:> ### Name: NNS.norm ./NNS.Rcheck/00check.log:> ### Title: NNS Normalization ./NNS.Rcheck/00check.log:> ### Aliases: NNS.norm ./NNS.Rcheck/00check.log:> ./NNS.Rcheck/00check.log:> ### ** Examples ./NNS.Rcheck/00check.log:> ./NNS.Rcheck/00check.log:> set.seed(123) ./NNS.Rcheck/00check.log:> x <- rnorm(100) ; y<-rnorm(100) ./NNS.Rcheck/00check.log:> A <- cbind(x, y) ./NNS.Rcheck/00check.log:> NNS.norm(A) ./NNS.Rcheck/00check.log:Error in `[.data.table`(RP, , `:=`(prior.quadrant = NULL)) : ./NNS.Rcheck/00check.log: Cannot coerce 'list' RHS to 'character' to match the type of the target column (column 4 named 'prior.quadrant'). ./NNS.Rcheck/00check.log:Calls: NNS.norm ... NNS.dep -> NNS.dep.base -> NNS.part -> [ -> [.data.table ./NNS.Rcheck/00check.log:Execution halted ./NNS.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./NNS.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./NNS.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./NNS.Rcheck/00check.log: ‘NNSvignette_Classification.Rmd’using ‘UTF-8’... OK ./NNS.Rcheck/00check.log: ‘NNSvignette_Clustering_and_Regression.Rmd’using ‘UTF-8’... OK ./NNS.Rcheck/00check.log: ‘NNSvignette_Correlation_and_Dependence.Rmd’using ‘UTF-8’... OK ./NNS.Rcheck/00check.log: ‘NNSvignette_Forecasting.Rmd’using ‘UTF-8’... OK ./NNS.Rcheck/00check.log: ‘NNSvignette_Partial_Moments.Rmd’using ‘UTF-8’... OK ./NNS.Rcheck/00check.log:* checking re-building of vignette outputs ... WARNING ./NNS.Rcheck/00check.log:Error(s) in re-building vignettes: ./NNS.Rcheck/00check.log:--- re-building ‘NNSvignette_Classification.Rmd’ using rmarkdown ./NNS.Rcheck/00check.log:Loading required package: NNS ./NNS.Rcheck/00check.log:Loading required package: doParallel ./NNS.Rcheck/00check.log:Loading required package: foreach ./NNS.Rcheck/00check.log:Loading required package: iterators ./NNS.Rcheck/00check.log:Loading required package: parallel ./NNS.Rcheck/00check.log:Loading required package: knitr ./NNS.Rcheck/00check.log:Loading required package: rgl ./NNS.Rcheck/00check.log:Loading required package: data.table ./NNS.Rcheck/00check.log:Quitting from lines 37-38 (NNSvignette_Classification.Rmd) ./NNS.Rcheck/00check.log:Error: processing vignette 'NNSvignette_Classification.Rmd' failed with diagnostics: ./NNS.Rcheck/00check.log:Cannot coerce 'list' RHS to 'character' to match the type of the target column (column 4 named 'prior.quadrant'). ./NNS.Rcheck/00check.log:--- failed re-building ‘NNSvignette_Classification.Rmd’ ./NNS.Rcheck/00check.log:--- re-building ‘NNSvignette_Clustering_and_Regression.Rmd’ using rmarkdown ./NNS.Rcheck/00check.log:Loading required package: NNS ./NNS.Rcheck/00check.log:Loading required package: doParallel ./NNS.Rcheck/00check.log:Loading required package: foreach ./NNS.Rcheck/00check.log:Loading required package: iterators ./NNS.Rcheck/00check.log:Loading required package: parallel ./NNS.Rcheck/00check.log:Loading required package: knitr ./NNS.Rcheck/00check.log:Loading required package: rgl ./NNS.Rcheck/00check.log:Loading required package: data.table ./NNS.Rcheck/00check.log:Quitting from lines 31-34 (NNSvignette_Clustering_and_Regression.Rmd) ./NNS.Rcheck/00check.log:Error: processing vignette 'NNSvignette_Clustering_and_Regression.Rmd' failed with diagnostics: ./NNS.Rcheck/00check.log:Cannot coerce 'list' RHS to 'character' to match the type of the target column (column 4 named 'prior.quadrant'). ./NNS.Rcheck/00check.log:--- failed re-building ‘NNSvignette_Clustering_and_Regression.Rmd’ ./NNS.Rcheck/00check.log:--- re-building ‘NNSvignette_Correlation_and_Dependence.Rmd’ using rmarkdown ./NNS.Rcheck/00check.log:Loading required package: NNS ./NNS.Rcheck/00check.log:Loading required package: doParallel ./NNS.Rcheck/00check.log:Loading required package: foreach ./NNS.Rcheck/00check.log:Loading required package: iterators ./NNS.Rcheck/00check.log:Loading required package: parallel ./NNS.Rcheck/00check.log:Loading required package: knitr ./NNS.Rcheck/00check.log:Loading required package: rgl ./NNS.Rcheck/00check.log:Loading required package: data.table ./NNS.Rcheck/00check.log:Quitting from lines 30-34 (NNSvignette_Correlation_and_Dependence.Rmd) ./NNS.Rcheck/00check.log:Error: processing vignette 'NNSvignette_Correlation_and_Dependence.Rmd' failed with diagnostics: ./NNS.Rcheck/00check.log:Cannot coerce 'list' RHS to 'character' to match the type of the target column (column 4 named 'prior.quadrant'). ./NNS.Rcheck/00check.log:--- failed re-building ‘NNSvignette_Correlation_and_Dependence.Rmd’ ./NNS.Rcheck/00check.log:--- re-building ‘NNSvignette_Forecasting.Rmd’ using rmarkdown ./NNS.Rcheck/00check.log:Loading required package: NNS ./NNS.Rcheck/00check.log:Loading required package: doParallel ./NNS.Rcheck/00check.log:Loading required package: foreach ./NNS.Rcheck/00check.log:Loading required package: iterators ./NNS.Rcheck/00check.log:Loading required package: parallel ./NNS.Rcheck/00check.log:Loading required package: knitr ./NNS.Rcheck/00check.log:Loading required package: rgl ./NNS.Rcheck/00check.log:Loading required package: data.table ./NNS.Rcheck/00check.log:Quitting from lines 47-50 (NNSvignette_Forecasting.Rmd) ./NNS.Rcheck/00check.log:Error: processing vignette 'NNSvignette_Forecasting.Rmd' failed with diagnostics: ./NNS.Rcheck/00check.log:task 1 failed - "Cannot coerce 'list' RHS to 'character' to match the type of the target column (column 4 named 'prior.quadrant')." ./NNS.Rcheck/00check.log:--- failed re-building ‘NNSvignette_Forecasting.Rmd’ ./NNS.Rcheck/00check.log:--- re-building ‘NNSvignette_Partial_Moments.Rmd’ using rmarkdown ./NNS.Rcheck/00check.log:--- finished re-building ‘NNSvignette_Partial_Moments.Rmd’ ./NNS.Rcheck/00check.log:SUMMARY: processing the following files failed: ./NNS.Rcheck/00check.log: ‘NNSvignette_Classification.Rmd’ ./NNS.Rcheck/00check.log: ‘NNSvignette_Clustering_and_Regression.Rmd’ ./NNS.Rcheck/00check.log: ‘NNSvignette_Correlation_and_Dependence.Rmd’ ./NNS.Rcheck/00check.log: ‘NNSvignette_Forecasting.Rmd’ ./NNS.Rcheck/00check.log:Error: Vignette re-building failed. ./NNS.Rcheck/00check.log:Execution halted ./NNS.Rcheck/00check.log:* checking PDF version of manual ... OK ./NNS.Rcheck/00check.log:* DONE ./NNS.Rcheck/00check.log:Status: 1 ERROR, 1 WARNING simstudy_0.1.14.tar.gz ./simstudy.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/simstudy.Rcheck’ ./simstudy.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./simstudy.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./simstudy.Rcheck/00check.log:* using session charset: UTF-8 ./simstudy.Rcheck/00check.log:* checking for file ‘simstudy/DESCRIPTION’ ... OK ./simstudy.Rcheck/00check.log:* checking extension type ... Package ./simstudy.Rcheck/00check.log:* this is package ‘simstudy’ version ‘0.1.14’ ./simstudy.Rcheck/00check.log:* package encoding: UTF-8 ./simstudy.Rcheck/00check.log:* checking package namespace information ... OK ./simstudy.Rcheck/00check.log:* checking package dependencies ... OK ./simstudy.Rcheck/00check.log:* checking if this is a source package ... OK ./simstudy.Rcheck/00check.log:* checking if there is a namespace ... OK ./simstudy.Rcheck/00check.log:* checking for executable files ... OK ./simstudy.Rcheck/00check.log:* checking for hidden files and directories ... OK ./simstudy.Rcheck/00check.log:* checking for portable file names ... OK ./simstudy.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./simstudy.Rcheck/00check.log:* checking whether package ‘simstudy’ can be installed ... OK ./simstudy.Rcheck/00check.log:* checking installed package size ... OK ./simstudy.Rcheck/00check.log:* checking package directory ... OK ./simstudy.Rcheck/00check.log:* checking ‘build’ directory ... OK ./simstudy.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./simstudy.Rcheck/00check.log:* checking top-level files ... OK ./simstudy.Rcheck/00check.log:* checking for left-over files ... OK ./simstudy.Rcheck/00check.log:* checking index information ... OK ./simstudy.Rcheck/00check.log:* checking package subdirectories ... OK ./simstudy.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./simstudy.Rcheck/00check.log:* checking R files for syntax errors ... OK ./simstudy.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./simstudy.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./simstudy.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./simstudy.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./simstudy.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./simstudy.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./simstudy.Rcheck/00check.log:* checking dependencies in R code ... OK ./simstudy.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./simstudy.Rcheck/00check.log:* checking replacement functions ... OK ./simstudy.Rcheck/00check.log:* checking foreign function calls ... OK ./simstudy.Rcheck/00check.log:* checking R code for possible problems ... OK ./simstudy.Rcheck/00check.log:* checking Rd files ... OK ./simstudy.Rcheck/00check.log:* checking Rd metadata ... OK ./simstudy.Rcheck/00check.log:* checking Rd cross-references ... OK ./simstudy.Rcheck/00check.log:* checking for missing documentation entries ... OK ./simstudy.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./simstudy.Rcheck/00check.log:* checking Rd \usage sections ... OK ./simstudy.Rcheck/00check.log:* checking Rd contents ... OK ./simstudy.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./simstudy.Rcheck/00check.log:* checking line endings in C/C++/Fortran sources/headers ... OK ./simstudy.Rcheck/00check.log:* checking compiled code ... OK ./simstudy.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./simstudy.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./simstudy.Rcheck/00check.log:* checking examples ... ERROR ./simstudy.Rcheck/00check.log:Running examples in ‘simstudy-Ex.R’ failed ./simstudy.Rcheck/00check.log:The error most likely occurred in: ./simstudy.Rcheck/00check.log:> ### Name: trtStepWedge ./simstudy.Rcheck/00check.log:> ### Title: Assign treatment for stepped-wedge design ./simstudy.Rcheck/00check.log:> ### Aliases: trtStepWedge ./simstudy.Rcheck/00check.log:> ./simstudy.Rcheck/00check.log:> ### ** Examples ./simstudy.Rcheck/00check.log:> ./simstudy.Rcheck/00check.log:> defc <- defData(varname = "ceffect", formula = 0, variance = 0.10, ./simstudy.Rcheck/00check.log:+ dist = "normal", id = "cluster") ./simstudy.Rcheck/00check.log:> defc <- defData(defc, "m", formula = 10, dist = "nonrandom") ./simstudy.Rcheck/00check.log:> ./simstudy.Rcheck/00check.log:> # Will generate 3 waves of 4 clusters each - starting 2, 5, and 8 ./simstudy.Rcheck/00check.log:> ./simstudy.Rcheck/00check.log:> dc <- genData(12, defc) ./simstudy.Rcheck/00check.log:> dp <- addPeriods(dc, 12, "cluster") ./simstudy.Rcheck/00check.log:> dp <- trtStepWedge(dp, "cluster", nWaves = 3, ./simstudy.Rcheck/00check.log:+ lenWaves = 3, startPer = 2) ./simstudy.Rcheck/00check.log:Error in `[.data.table`(dd, , `:=`(xr = NULL)) : ./simstudy.Rcheck/00check.log: Cannot coerce 'list' RHS to 'double' to match the type of the target column (column 7 named 'xr'). ./simstudy.Rcheck/00check.log:Calls: trtStepWedge -> [ -> [.data.table ./simstudy.Rcheck/00check.log:Execution halted ./simstudy.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./simstudy.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./simstudy.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./simstudy.Rcheck/00check.log: ‘simstudy.Rmd’using ‘UTF-8’... OK ./simstudy.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./simstudy.Rcheck/00check.log:* checking PDF version of manual ... OK ./simstudy.Rcheck/00check.log:* DONE ./simstudy.Rcheck/00check.log:Status: 1 ERROR table.express_0.3.1.tar.gz ./table.express.Rcheck/00check.log:* using log directory ‘/home/mdowle/build/revdeplib/table.express.Rcheck’ ./table.express.Rcheck/00check.log:* using R version 3.6.1 (2019-07-05) ./table.express.Rcheck/00check.log:* using platform: x86_64-pc-linux-gnu (64-bit) ./table.express.Rcheck/00check.log:* using session charset: UTF-8 ./table.express.Rcheck/00check.log:* checking for file ‘table.express/DESCRIPTION’ ... OK ./table.express.Rcheck/00check.log:* checking extension type ... Package ./table.express.Rcheck/00check.log:* this is package ‘table.express’ version ‘0.3.1’ ./table.express.Rcheck/00check.log:* package encoding: UTF-8 ./table.express.Rcheck/00check.log:* checking package namespace information ... OK ./table.express.Rcheck/00check.log:* checking package dependencies ... OK ./table.express.Rcheck/00check.log:* checking if this is a source package ... OK ./table.express.Rcheck/00check.log:* checking if there is a namespace ... OK ./table.express.Rcheck/00check.log:* checking for executable files ... OK ./table.express.Rcheck/00check.log:* checking for hidden files and directories ... OK ./table.express.Rcheck/00check.log:* checking for portable file names ... OK ./table.express.Rcheck/00check.log:* checking for sufficient/correct file permissions ... OK ./table.express.Rcheck/00check.log:* checking whether package ‘table.express’ can be installed ... OK ./table.express.Rcheck/00check.log:* checking installed package size ... OK ./table.express.Rcheck/00check.log:* checking package directory ... OK ./table.express.Rcheck/00check.log:* checking ‘build’ directory ... OK ./table.express.Rcheck/00check.log:* checking DESCRIPTION meta-information ... OK ./table.express.Rcheck/00check.log:* checking top-level files ... OK ./table.express.Rcheck/00check.log:* checking for left-over files ... OK ./table.express.Rcheck/00check.log:* checking index information ... OK ./table.express.Rcheck/00check.log:* checking package subdirectories ... OK ./table.express.Rcheck/00check.log:* checking R files for non-ASCII characters ... OK ./table.express.Rcheck/00check.log:* checking R files for syntax errors ... OK ./table.express.Rcheck/00check.log:* checking whether the package can be loaded ... OK ./table.express.Rcheck/00check.log:* checking whether the package can be loaded with stated dependencies ... OK ./table.express.Rcheck/00check.log:* checking whether the package can be unloaded cleanly ... OK ./table.express.Rcheck/00check.log:* checking whether the namespace can be loaded with stated dependencies ... OK ./table.express.Rcheck/00check.log:* checking whether the namespace can be unloaded cleanly ... OK ./table.express.Rcheck/00check.log:* checking loading without being on the library search path ... OK ./table.express.Rcheck/00check.log:* checking dependencies in R code ... OK ./table.express.Rcheck/00check.log:* checking S3 generic/method consistency ... OK ./table.express.Rcheck/00check.log:* checking replacement functions ... OK ./table.express.Rcheck/00check.log:* checking foreign function calls ... OK ./table.express.Rcheck/00check.log:* checking R code for possible problems ... OK ./table.express.Rcheck/00check.log:* checking Rd files ... OK ./table.express.Rcheck/00check.log:* checking Rd metadata ... OK ./table.express.Rcheck/00check.log:* checking Rd cross-references ... OK ./table.express.Rcheck/00check.log:* checking for missing documentation entries ... OK ./table.express.Rcheck/00check.log:* checking for code/documentation mismatches ... OK ./table.express.Rcheck/00check.log:* checking Rd \usage sections ... OK ./table.express.Rcheck/00check.log:* checking Rd contents ... OK ./table.express.Rcheck/00check.log:* checking for unstated dependencies in examples ... OK ./table.express.Rcheck/00check.log:* checking installed files from ‘inst/doc’ ... OK ./table.express.Rcheck/00check.log:* checking files in ‘vignettes’ ... OK ./table.express.Rcheck/00check.log:* checking examples ... ERROR ./table.express.Rcheck/00check.log:Running examples in ‘table.express-Ex.R’ failed ./table.express.Rcheck/00check.log:The error most likely occurred in: ./table.express.Rcheck/00check.log:> ### Name: table.express-package ./table.express.Rcheck/00check.log:> ### Title: Building 'data.table' expressions with data manipulation verbs ./table.express.Rcheck/00check.log:> ### Aliases: table.express table.express-package ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> ### ** Examples ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> require("data.table") ./table.express.Rcheck/00check.log:Loading required package: data.table ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> data("mtcars") ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> DT <- as.data.table(mtcars) ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> # ==================================================================================== ./table.express.Rcheck/00check.log:> # Simple dplyr-like transformations ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> DT %>% ./table.express.Rcheck/00check.log:+ group_by(cyl) %>% ./table.express.Rcheck/00check.log:+ filter(vs == 0, am == 1) %>% ./table.express.Rcheck/00check.log:+ transmute(mean_mpg = mean(mpg)) %>% ./table.express.Rcheck/00check.log:+ arrange(-cyl) ./table.express.Rcheck/00check.log: cyl mean_mpg ./table.express.Rcheck/00check.log:1: 8 15.40000 ./table.express.Rcheck/00check.log:2: 6 20.56667 ./table.express.Rcheck/00check.log:3: 4 26.00000 ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> # Equivalent to previous ./table.express.Rcheck/00check.log:> DT %>% ./table.express.Rcheck/00check.log:+ start_expr %>% ./table.express.Rcheck/00check.log:+ transmute(mean_mpg = mean(mpg)) %>% ./table.express.Rcheck/00check.log:+ where(vs == 0, am == 1) %>% ./table.express.Rcheck/00check.log:+ group_by(cyl) %>% ./table.express.Rcheck/00check.log:+ order_by(-cyl) %>% ./table.express.Rcheck/00check.log:+ end_expr ./table.express.Rcheck/00check.log: cyl mean_mpg ./table.express.Rcheck/00check.log:1: 8 15.40000 ./table.express.Rcheck/00check.log:2: 6 20.56667 ./table.express.Rcheck/00check.log:3: 4 26.00000 ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> # Modification by reference ./table.express.Rcheck/00check.log:> DT %>% ./table.express.Rcheck/00check.log:+ where(gear %% 2 != 0, carb %% 2 == 0) %>% ./table.express.Rcheck/00check.log:+ mutate(wt_squared = wt ^ 2) ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> print(DT) ./table.express.Rcheck/00check.log: mpg cyl disp hp drat wt qsec vs am gear carb wt_squared ./table.express.Rcheck/00check.log: 1: 21.0 6 160.0 110 3.90 2.620 16.46 0 1 4 4 NA ./table.express.Rcheck/00check.log: 2: 21.0 6 160.0 110 3.90 2.875 17.02 0 1 4 4 NA ./table.express.Rcheck/00check.log: 3: 22.8 4 108.0 93 3.85 2.320 18.61 1 1 4 1 NA ./table.express.Rcheck/00check.log: 4: 21.4 6 258.0 110 3.08 3.215 19.44 1 0 3 1 NA ./table.express.Rcheck/00check.log: 5: 18.7 8 360.0 175 3.15 3.440 17.02 0 0 3 2 11.833600 ./table.express.Rcheck/00check.log: 6: 18.1 6 225.0 105 2.76 3.460 20.22 1 0 3 1 NA ./table.express.Rcheck/00check.log: 7: 14.3 8 360.0 245 3.21 3.570 15.84 0 0 3 4 12.744900 ./table.express.Rcheck/00check.log: 8: 24.4 4 146.7 62 3.69 3.190 20.00 1 0 4 2 NA ./table.express.Rcheck/00check.log: 9: 22.8 4 140.8 95 3.92 3.150 22.90 1 0 4 2 NA ./table.express.Rcheck/00check.log:10: 19.2 6 167.6 123 3.92 3.440 18.30 1 0 4 4 NA ./table.express.Rcheck/00check.log:11: 17.8 6 167.6 123 3.92 3.440 18.90 1 0 4 4 NA ./table.express.Rcheck/00check.log:12: 16.4 8 275.8 180 3.07 4.070 17.40 0 0 3 3 NA ./table.express.Rcheck/00check.log:13: 17.3 8 275.8 180 3.07 3.730 17.60 0 0 3 3 NA ./table.express.Rcheck/00check.log:14: 15.2 8 275.8 180 3.07 3.780 18.00 0 0 3 3 NA ./table.express.Rcheck/00check.log:15: 10.4 8 472.0 205 2.93 5.250 17.98 0 0 3 4 27.562500 ./table.express.Rcheck/00check.log:16: 10.4 8 460.0 215 3.00 5.424 17.82 0 0 3 4 29.419776 ./table.express.Rcheck/00check.log:17: 14.7 8 440.0 230 3.23 5.345 17.42 0 0 3 4 28.569025 ./table.express.Rcheck/00check.log:18: 32.4 4 78.7 66 4.08 2.200 19.47 1 1 4 1 NA ./table.express.Rcheck/00check.log:19: 30.4 4 75.7 52 4.93 1.615 18.52 1 1 4 2 NA ./table.express.Rcheck/00check.log:20: 33.9 4 71.1 65 4.22 1.835 19.90 1 1 4 1 NA ./table.express.Rcheck/00check.log:21: 21.5 4 120.1 97 3.70 2.465 20.01 1 0 3 1 NA ./table.express.Rcheck/00check.log:22: 15.5 8 318.0 150 2.76 3.520 16.87 0 0 3 2 12.390400 ./table.express.Rcheck/00check.log:23: 15.2 8 304.0 150 3.15 3.435 17.30 0 0 3 2 11.799225 ./table.express.Rcheck/00check.log:24: 13.3 8 350.0 245 3.73 3.840 15.41 0 0 3 4 14.745600 ./table.express.Rcheck/00check.log:25: 19.2 8 400.0 175 3.08 3.845 17.05 0 0 3 2 14.784025 ./table.express.Rcheck/00check.log:26: 27.3 4 79.0 66 4.08 1.935 18.90 1 1 4 1 NA ./table.express.Rcheck/00check.log:27: 26.0 4 120.3 91 4.43 2.140 16.70 0 1 5 2 4.579600 ./table.express.Rcheck/00check.log:28: 30.4 4 95.1 113 3.77 1.513 16.90 1 1 5 2 2.289169 ./table.express.Rcheck/00check.log:29: 15.8 8 351.0 264 4.22 3.170 14.50 0 1 5 4 10.048900 ./table.express.Rcheck/00check.log:30: 19.7 6 145.0 175 3.62 2.770 15.50 0 1 5 6 7.672900 ./table.express.Rcheck/00check.log:31: 15.0 8 301.0 335 3.54 3.570 14.60 0 1 5 8 12.744900 ./table.express.Rcheck/00check.log:32: 21.4 4 121.0 109 4.11 2.780 18.60 1 1 4 2 NA ./table.express.Rcheck/00check.log: mpg cyl disp hp drat wt qsec vs am gear carb wt_squared ./table.express.Rcheck/00check.log:> ./table.express.Rcheck/00check.log:> # Deletion by reference ./table.express.Rcheck/00check.log:> DT %>% ./table.express.Rcheck/00check.log:+ mutate(wt_squared = NULL) %>% ./table.express.Rcheck/00check.log:+ print ./table.express.Rcheck/00check.log:Error in `[.data.table`(.DT_, , `:=`(wt_squared = NULL)) : ./table.express.Rcheck/00check.log: Cannot coerce 'list' RHS to 'double' to match the type of the target column (column 12 named 'wt_squared'). ./table.express.Rcheck/00check.log:Calls: %>% ... -> -> -> [ -> [.data.table ./table.express.Rcheck/00check.log:Execution halted ./table.express.Rcheck/00check.log:* checking for unstated dependencies in ‘tests’ ... OK ./table.express.Rcheck/00check.log:* checking tests ... ERROR ./table.express.Rcheck/00check.log: Running ‘testthat.R’ ./table.express.Rcheck/00check.log:Running the tests in ‘tests/testthat.R’ failed. ./table.express.Rcheck/00check.log:Last 13 lines of output: ./table.express.Rcheck/00check.log: 13: private$.eval(parent_env, .DT_ = .DT_, ...) ./table.express.Rcheck/00check.log: 14: rlang::eval_tidy(final_expr, env = .expr_env) ./table.express.Rcheck/00check.log: 15: .DT_[, `:=`(purchase_time = NULL)] ./table.express.Rcheck/00check.log: 16: `[.data.table`(.DT_, , `:=`(purchase_time = NULL)) ./table.express.Rcheck/00check.log: ./table.express.Rcheck/00check.log: ══ testthat results ═══════════════════════════════════════════════════════════ ./table.express.Rcheck/00check.log: [ OK: 577 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 5 ] ./table.express.Rcheck/00check.log: 1. Error: Mutating by reference without parsing works. ./table.express.Rcheck/00check.log: 2. Error: Mutating by reference with parsing works. ./table.express.Rcheck/00check.log: 3. Error: Mutating by value without parsing works. ./table.express.Rcheck/00check.log: 4. Error: Mutating by value with parsing works. ./table.express.Rcheck/00check.log: 5. Error: Visits that had a purchase afterwards, with totals per name and n_visits before purchase. ./table.express.Rcheck/00check.log: ./table.express.Rcheck/00check.log: Error: testthat unit tests failed ./table.express.Rcheck/00check.log: Execution halted ./table.express.Rcheck/00check.log:* checking for unstated dependencies in vignettes ... OK ./table.express.Rcheck/00check.log:* checking package vignettes in ‘inst/doc’ ... OK ./table.express.Rcheck/00check.log:* checking running R code from vignettes ... NONE ./table.express.Rcheck/00check.log: ‘joins.Rmd’using ‘UTF-8’... OK ./table.express.Rcheck/00check.log: ‘table.express.Rmd’using ‘UTF-8’... OK ./table.express.Rcheck/00check.log:* checking re-building of vignette outputs ... OK ./table.express.Rcheck/00check.log:* checking PDF version of manual ... OK ./table.express.Rcheck/00check.log:* DONE ./table.express.Rcheck/00check.log:Status: 2 ERRORs