script.sh

#!/bin/bash

############################################################################################
# 99% of this is directly the work of Scott Leibrand, Dana Lewis, and Ben West - Thank you!!!
# This script is meant mostly for an Intel Edison setup with radio connected over serial, such as the CC1111, ERF, or RileyLink
# openxshareble must be install for the "Get-BG" alias to work appropriately.  Follow the openxshareble instructions in this repo
# openxshareble currently requires a Dexcom G4 share receiver to connect and pull BGs via bluetooth.
# This does allow the OpenAPS unit to operate in offline mode.
# For Nightscout uploading to work and pulling BGs from NS should the unit fail to pull via bluetooth, you must have your Nightscout envirnment variables set.
# Follow the OpenAPS docs for setting those variables correctly.
#############################################################################################
#
# Released under MIT license. See the accompanying LICENSE.txt file for
# full terms and conditions
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.

die() {
  echo "$@"
  exit 1
}

if [[ $# -lt 2 ]]; then
    #openaps device show pump 2>/dev/null >/dev/null || die "Usage: setup.sh <directory> <pump serial #> [max_iob] [Share serial #]
    openaps device show pump 2>/dev/null >/dev/null || die "Usage: script.sh <directory> <pump serial #> [max_iob] [/dev/ttySOMETHING] [Dex SN] Ex: ./script.sh /home/edison/src/aps 123456 8 /dev/ttyMFD1 SM52087572 "
fi
directory=`mkdir -p $1; cd $1; pwd`
serial=$2

if [[ $# -lt 3 ]]; then
    max_iob=0
else
    max_iob=$3
fi

if [[ $# -gt 3 ]]; then
    share_serial=$5
fi
if [[ $# -gt 3 ]]; then
    ttyport=$4
fi
echo -n Setting up oref0 in $directory for pump $serial with max_iob $max_iob and TTY $ttyport
echo

read -p "Continue? " -n 1 -r
echo
if [[ $REPLY =~ ^[Yy]$ ]]; then

( ( cd $directory 2>/dev/null && git status ) || ( openaps init $directory ) ) || die "Can't init $directory"
cd $directory || die "Can't cd $directory"

( ! grep -q max_iob max_iob.json 2>/dev/null || [[ $max_iob != "0" ]] ) && echo "{ \"max_iob\": $max_iob }" > max_iob.json
cat max_iob.json
git add max_iob.json

sudo cp ~/src/oref0/logrotate.openaps /etc/logrotate.d/openaps
sudo cp ~/src/oref0/logrotate.rsyslog /etc/logrotate.d/rsyslog

test -d /var/log/openaps || sudo mkdir /var/log/openaps && sudo chown $USER /var/log/openaps

openaps vendor add openapscontrib.timezones
openaps vendor add openxshareble
openaps vendor add mmeowlink.vendors.mmeowlink

# don't re-create devices if they already exist
openaps device show 2>/dev/null > /tmp/openaps-devices

# add devices
grep -q pump.ini .gitignore 2>/dev/null || echo pump.ini >> .gitignore
git add .gitignore
#grep pump /tmp/openaps-devices || openaps device add pump medtronic $serial || die "Can't add pump"
grep pump /tmp/openaps-devices || openaps device add pump mmeowlink subg_rfspy $ttyport $serial || die "Can't add pump"
#grep cgm /tmp/openaps-devices || openaps device add cgm dexcom || die "Can't add CGM"
#git add cgm.ini
grep share /tmp/openaps-devices || openaps device add cgm openxshareble || die "Can't add Share"
openaps use cgm configure --serial $share_serial
git add cgm.ini
#openaps device remove ns-glucose
grep ns-glucose /tmp/openaps-devices || openaps device add ns-glucose process 'bash -c "curl -m 30 -s $NIGHTSCOUT_HOST/api/v1/entries/sgv.json?count=288 | json -e \"this.glucose = this.sgv\""' || die "Can't add ns-glucose"
git add ns-glucose.ini
grep oref0 /tmp/openaps-devices || openaps device add oref0 process oref0 || die "Can't add oref0"
git add oref0.ini
grep iob /tmp/openaps-devices || openaps device add iob process --require "pumphistory profile clock" oref0 calculate-iob || die "Can't add iob"
git add iob.ini
grep meal /tmp/openaps-devices || openaps device add meal process --require "pumphistory profile clock carbs glucose basal" oref0 meal || die "Can't add meal"
git add meal.ini
grep get-profile /tmp/openaps-devices || openaps device add get-profile process --require "settings bg_targets isf basal_profile max_iob carb_ratios" oref0 get-profile || die "Can't add get-profile"
git add get-profile.ini
grep detect-sensitivity /tmp/openaps-devices || openaps device add detect-sensitivity process --require "glucose pumphistory isf basal_profile profile" oref0 detect-sensitivity || die "Can't add detect-sensitivity"
git add detect-sensitivity.ini
#openaps device remove determine-basal
grep determine-basal /tmp/openaps-devices || openaps device add determine-basal process --require "iob temp_basal glucose profile autosens meal" oref0 determine-basal || die "Can't add determine-basal"
git add determine-basal.ini
grep pebble /tmp/openaps-devices || openaps device add pebble process --require "glucose iob basal_profile temp_basal suggested enacted meal" oref0 pebble || die "Can't add pebble"
git add pebble.ini
grep tz /tmp/openaps-devices || openaps device add tz timezones || die "Can't add tz"
git add tz.ini

# don't re-create reports if they already exist
openaps report show 2>/dev/null > /tmp/openaps-reports

# add reports for frequently-refreshed monitoring data
ls monitor 2>/dev/null >/dev/null || mkdir monitor || die "Can't mkdir monitor"
grep monitor/cgm-glucose.json /tmp/openaps-reports || openaps report add monitor/cgm-glucose.json JSON cgm iter_glucose 300 || die "Can't add cgm-glucose.json"
#grep monitor/share-glucose.json /tmp/openaps-reports || openaps report add monitor/share-glucose.json JSON share iter_glucose 5 || die "Can't add share-glucose.json"
grep monitor/ns-glucose.json /tmp/openaps-reports || openaps report add monitor/ns-glucose.json text ns-glucose shell || die "Can't add ns-glucose.json"
grep settings/model.json /tmp/openaps-reports || openaps report add settings/model.json JSON pump model || die "Can't add model"
grep monitor/clock.json /tmp/openaps-reports || openaps report add monitor/clock.json JSON pump read_clock || die "Can't add clock.json"
grep monitor/clock-zoned.json /tmp/openaps-reports || openaps report add monitor/clock-zoned.json JSON tz clock monitor/clock.json || die "Can't add clock-zoned.json"
grep monitor/temp_basal.json /tmp/openaps-reports || openaps report add monitor/temp_basal.json JSON pump read_temp_basal || die "Can't add temp_basal.json"
grep monitor/reservoir.json /tmp/openaps-reports || openaps report add monitor/reservoir.json JSON pump reservoir || die "Can't add reservoir.json"
grep monitor/battery.json /tmp/openaps-reports || openaps report add monitor/battery.json JSON pump read_battery_status || die "Can't add battery.json"
grep monitor/status.json /tmp/openaps-reports || openaps report add monitor/status.json JSON pump status || die "Can't add status.json"
grep monitor/pumphistory.json /tmp/openaps-reports || openaps report add monitor/pumphistory.json JSON pump iter_pump_hours 28 || die "Can't add pumphistory.json"
grep settings/pumphistory-24h.json /tmp/openaps-reports || openaps report add settings/pumphistory-24h.json JSON pump iter_pump_hours 28 || die "Can't add pumphistory-24h.json"
grep monitor/pumphistory-zoned.json /tmp/openaps-reports || openaps report add monitor/pumphistory-zoned.json JSON tz rezone monitor/pumphistory.json || die "Can't add pumphistory-zoned.json"
grep settings/pumphistory-24h-zoned.json /tmp/openaps-reports || openaps report add settings/pumphistory-24h-zoned.json JSON tz rezone settings/pumphistory-24h.json || die "Can't add pumphistory-24h-zoned.json"
grep monitor/iob.json /tmp/openaps-reports || openaps report add monitor/iob.json text iob shell monitor/pumphistory-zoned.json settings/profile.json monitor/clock-zoned.json || die "Can't add iob.json"
grep monitor/meal.json /tmp/openaps-reports || openaps report add monitor/meal.json text meal shell monitor/pumphistory-zoned.json settings/profile.json monitor/clock-zoned.json monitor/carbhistory.json monitor/glucose.json settings/basal_profile.json || die "Can't add meal.json"
#openaps report remove settings/autosens.json
grep settings/autosens.json /tmp/openaps-reports || openaps report add settings/autosens.json text detect-sensitivity shell monitor/glucose.json settings/pumphistory-24h-zoned.json settings/insulin_sensitivities.json settings/basal_profile.json settings/profile.json || die "Can't add autosens.json"

# add reports for infrequently-refreshed settings data
ls settings 2>/dev/null >/dev/null || mkdir settings || die "Can't mkdir settings"
grep settings/bg_targets.json /tmp/openaps-reports || openaps report add settings/bg_targets.json JSON pump read_bg_targets || die "Can't add bg_targets.json"
grep settings/insulin_sensitivities.json /tmp/openaps-reports || openaps report add settings/insulin_sensitivities.json JSON pump read_insulin_sensitivities || die "Can't add insulin_sensitivities.json"
grep settings/carb_ratios.json /tmp/openaps-reports || openaps report add settings/carb_ratios.json JSON pump read_carb_ratios || die "Can't add carb_ratios.json"
grep settings/basal_profile.json /tmp/openaps-reports || openaps report add settings/basal_profile.json JSON pump read_selected_basal_profile || die "Can't add basal_profile.json"
grep settings/settings.json /tmp/openaps-reports || openaps report add settings/settings.json JSON pump read_settings || die "Can't add settings.json"
grep settings/profile.json /tmp/openaps-reports || openaps report add settings/profile.json text get-profile shell settings/settings.json settings/bg_targets.json settings/insulin_sensitivities.json settings/basal_profile.json max_iob.json settings/carb_ratios.json || die "Can't add profile.json"

# add suggest and enact reports
ls enact 2>/dev/null >/dev/null || mkdir enact || die "Can't mkdir enact"
#openaps report remove enact/suggested.json
grep enact/suggested.json /tmp/openaps-reports || openaps report add enact/suggested.json text determine-basal shell monitor/iob.json monitor/temp_basal.json monitor/glucose.json settings/profile.json settings/autosens.json monitor/meal.json || die "Can't add suggested.json"
grep enact/enacted.json /tmp/openaps-reports || openaps report add enact/enacted.json JSON pump set_temp_basal enact/suggested.json || die "Can't add enacted.json"

# upload results
ls upload 2>/dev/null >/dev/null || mkdir upload || die "Can't mkdir upload"
grep upload/pebble.json /tmp/openaps-reports || openaps report add upload/pebble.json text pebble shell monitor/glucose.json monitor/iob.json settings/basal_profile.json monitor/temp_basal.json enact/suggested.json enact/enacted.json monitor/meal.json || die "Can't add pebble.json"

# don't re-create aliases if they already exist
openaps alias show 2>/dev/null > /tmp/openaps-aliases

# add aliases to get data
openaps alias add invoke "report invoke" || die "Can't add invoke"
#openaps alias add mmtune "! bash -c \"cd ~/src/minimed_rf/ && ruby -I lib bin/mmtune $ttyport $serial | egrep -v 'rssi:|OK|Ver|Open'\""
openaps alias add mmtune "! bash -c \"cd ~/src/mmeowlink/mmeowlink/ && mmtune.py $ttyport $serial >/dev/null\""
#openaps alias add preflight '! bash -c "echo -n \"mmtune: \" && openaps mmtune && echo -n \"PREFLIGHT \" && openaps report invoke monitor/temp_basal.json 2>/dev/null >/dev/null && echo -n \"OK, temp duration check \" && cat monitor/temp_basal.json | json -c \"this.duration < 25\" | grep -q duration && echo OK || ( echo FAIL; sleep 120; exit 1 )"' || die "Can't add preflight"
openaps alias add preflight '! bash -c "echo -n \"mmtune: \" && openaps mmtune && echo -n \"PREFLIGHT \" && openaps report invoke monitor/temp_basal.json 2>/dev/null >/dev/null && echo "OK" $(date) || ( echo "FAIL" $(date); sleep 10; exit 1 )"' || die "Can't add preflight"
openaps alias add monitor-cgm "report invoke monitor/cgm-glucose.json" || die "Can't add monitor-cgm"
#openaps alias add monitor-share "report invoke monitor/share-glucose.json" || die "Can't add monitor-share"
openaps alias add get-ns-glucose "report invoke monitor/ns-glucose.json" || die "Can't add get-ns-glucose"
openaps alias add monitor-pump "report invoke monitor/clock.json monitor/temp_basal.json monitor/pumphistory.json monitor/pumphistory-zoned.json monitor/clock-zoned.json monitor/iob.json monitor/meal.json monitor/reservoir.json monitor/battery.json monitor/status.json" || die "Can't add monitor-pump"
openaps alias add ns-meal-carbs '! bash -c "curl -m 30 -s \"$NIGHTSCOUT_HOST/api/v1/treatments.json?find\[created_at\]\[\$gte\]=`date -d \"6 hours ago\" -Iminutes`&find\[carbs\]\[\$exists\]=true\" > monitor/carbhistory.json && oref0-meal monitor/pumphistory-zoned.json settings/profile.json monitor/clock-zoned.json monitor/carbhistory.json > monitor/meal.json; exit 0"'
openaps alias add get-settings "report invoke settings/model.json settings/bg_targets.json settings/insulin_sensitivities.json settings/basal_profile.json settings/settings.json settings/carb_ratios.json settings/profile.json settings/pumphistory-24h.json settings/pumphistory-24h-zoned.json settings/autosens.json" || die "Can't add get-settings"
#openaps alias add get-bg '! bash -c "( openaps monitor-cgm 2>/dev/null | tail -1 && cat monitor/cgm-glucose.json | json -c \"minAgo=(new Date()-new Date(this.display_time.replace(\\\"T\\\", \\\" \\\")))/60/1000; return minAgo < 10 && minAgo > -5 && this.glucose > 30\" | grep -q glucose && rsync -rtu monitor/cgm-glucose.json monitor/glucose.json )"' || die "Can't add get-bg"
openaps alias add get-bg '! bash -c "( openaps monitor-cgm 2>/dev/null | tail -1 && grep -q glucose monitor/cgm-glucose.json && rsync -rtu monitor/cgm-glucose.json monitor/glucose.json ) || ( openaps get-ns-glucose && grep -q glucose monitor/ns-glucose.json && mv monitor/ns-glucose.json monitor/glucose.json )"' || die "Can't add get-bg"
#openaps alias add get-bg '! bash -c "( openaps monitor-cgm 2>/dev/null | tail -1 && cat monitor/cgm-glucose.json | json -c \"minAgo=(new Date()-new Date(this.display_time.replace(\\\"T\\\", \\\" \\\")))/60/1000; return minAgo < 10 && minAgo > -5 && this.glucose > 30\" | grep -q glucose && rsync -rtu monitor/cgm-glucose.json monitor/glucose.json ) || ( openaps get-ns-glucose && grep -q glucose monitor/ns-glucose.json && mv monitor/ns-glucose.json monitor/glucose.json )"' || die "Can't add get-bg"
#openaps alias add get-bg '! bash -c "( openaps get-ns-glucose && cat monitor/ns-glucose.json | json -c \"minAgo=(new Date()-new Date(this.dateString))/60/1000; return minAgo < 10 && minAgo > -5 && this.glucose > 30\" | grep -q glucose && mv monitor/ns-glucose.json monitor/glucose.json ) || ( openaps monitor-cgm 2>/dev/null | tail -1 && grep -q glucose monitor/cgm-glucose.json && rsync -rtu monitor/cgm-glucose.json monitor/glucose.json )"' || die "Can't add get-bg"
#openaps alias add get-bg '! bash -c "( openaps monitor-cgm 2>/dev/null | tail -1 && grep -q glucose monitor/cgm-glucose.json && rsync -rtu monitor/cgm-glucose.json monitor/glucose.json "' || die "Can't add get-bg"
openaps alias add gather '! bash -c "rm monitor/*; ( openaps get-bg | egrep \"reporting|Copied\" && echo -n R && openaps report invoke monitor/status.json 2>/dev/null >/dev/null && echo -n e && test $(cat monitor/status.json | json bolusing) == false && echo -n fr && openaps ns-meal-carbs && echo -n esh && ( (openaps monitor-pump || openaps monitor-pump) >/dev/null && echo ed ) || (echo; sleep 10; exit 1)) 2>/dev/null"' || die "Can't add gather"
openaps alias add wait-for-bg '! bash -c "cp monitor/glucose.json monitor/last-glucose.json; while(diff -q monitor/last-glucose.json monitor/glucose.json); do echo -n .; sleep 10; openaps get-bg >/dev/null; done"'
# add aliases to enact and loop
openaps alias add enact '! bash -c "rm enact/suggested.json; openaps invoke enact/suggested.json && if (cat enact/suggested.json && grep -q duration enact/suggested.json); then ( rm enact/enacted.json; openaps invoke enact/enacted.json ; grep -q duration enact/enacted.json || openaps invoke enact/enacted.json ) 2>&1 | egrep -v \"^  |subg_rfspy|handler\" && cat enact/enacted.json | json -0 | tee enact/enacted.json; else echo No action required; fi"' || die "Can't add enact"
#openaps alias add wait-loop '! bash -c "openaps preflight && openaps gather && openaps enact && openaps report invoke monitor/temp_basal.json 2>/dev/null >/dev/null && openaps upload && (openaps get-settings || openaps get-settings) 2>/dev/null >/dev/null && openaps wait-for-bg && openaps enact && openaps upload-ns-status >/dev/null"' || die "Can't add wait-loop"
openaps alias add wait-loop '! bash -c "openaps preflight && openaps get-bg && openaps enact && openaps gather && openaps enact && openaps report invoke monitor/temp_basal.json 2>/dev/null >/dev/null && openaps upload && (openaps get-settings || openaps get-settings) 2>/dev/null >/dev/null && openaps wait-for-bg && openaps enact && openaps upload-ns-status >/dev/null"' || die "Can't add wait-loop"
openaps alias add loop '! bash -c "openaps preflight && openaps gather && openaps get-settings 2>/dev/null >/dev/null && openaps enact && openaps upload"' || die "Can't add loop"
openaps alias add retry-loop '! bash -c "openaps wait-loop || openaps loop"' || die "Can't add retry-loop"

# add aliases to upload results
openaps alias add pebble '! bash -c "grep -q iob monitor/iob.json && grep -q absolute enact/suggested.json && openaps report invoke upload/pebble.json"' || die "Can't add pebble"
openaps alias add prep-pumphistory-entries '! bash -c "cat monitor/pumphistory-zoned.json | json -e \"this.dateString = this.timestamp\" | json -e \"this.medtronic = this._type\" | json -e \"this.type = \\\"medtronic\\\"\" | json -e \"this.date = new Date(Date.parse(this.timestamp)).getTime( )\" > upload/pumphistory-entries.json"' || die "Can't add prep-pumphistory-entries"
openaps alias add upload-pumphistory-entries '! bash -c "openaps prep-pumphistory-entries && ns-upload-entries upload/pumphistory-entries.json"' || die "Can't add upload-pumphistory-entries"
openaps alias add latest-ns-treatment-time '! bash -c "nightscout latest-openaps-treatment $NIGHTSCOUT_HOST | json created_at"' || die "Can't add latest-ns-treatment-time"
openaps alias add format-latest-nightscout-treatments '! bash -c "nightscout cull-latest-openaps-treatments monitor/pumphistory-zoned.json settings/model.json $(openaps latest-ns-treatment-time) > upload/latest-treatments.json"' || die "Can't add format-latest-nightscout-treatments"
openaps alias add upload-recent-treatments '! bash -c "openaps format-latest-nightscout-treatments && test $(json -f upload/latest-treatments.json -a created_at eventType | wc -l ) -gt 0 && (ns-upload $NIGHTSCOUT_HOST $API_SECRET treatments.json upload/latest-treatments.json ) || echo \"No recent treatments to upload\""' || die "Can't add upload-recent-treatments"
openaps alias add format-ns-status '! bash -c "ns-status monitor/clock-zoned.json monitor/iob.json enact/suggested.json enact/enacted.json monitor/battery.json monitor/reservoir.json monitor/status.json > upload/ns-status.json"' || die "Can't add format-ns-status"
openaps alias add upload-ns-status '! bash -c "grep -q iob monitor/iob.json && grep -q absolute enact/suggested.json && openaps format-ns-status && grep -q iob upload/ns-status.json && ns-upload $NIGHTSCOUT_HOST $API_SECRET devicestatus.json upload/ns-status.json"' || die "Can't add upload-ns-status"
openaps alias add upload '! bash -c "echo -n Upload && ( openaps upload-ns-status; openaps report invoke enact/suggested.json 2>/dev/null; openaps pebble; openaps upload-pumphistory-entries; openaps upload-recent-treatments ) 2>/dev/null >/dev/null && echo ed"' || die "Can't add upload"

read -p "Schedule openaps retry-loop in cron? " -n 1 -r
echo
if [[ $REPLY =~ ^[Yy]$ ]]; then
    # add crontab entries
    (crontab -l; crontab -l | grep -q PATH || echo 'PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | crontab -
    (crontab -l; crontab -l | grep -q killall || echo '* * * * * killall -g --older-than 10m openaps') | crontab -
    (crontab -l; crontab -l | grep -q "reset-git" || echo "* * * * * cd $directory && oref0-reset-git") | crontab -
    (crontab -l; crontab -l | grep -q retry-loop || echo "* * * * * cd $directory && ( ps aux | grep -v grep | grep -q 'openaps retry-loop' || openaps retry-loop ) 2>&1 | tee -a /var/log/openaps/loop.log") | crontab -
    crontab -l
fi

fi