Skip database-dependent tests when test database is empty #64
Workflow file for this run
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| name: CI - Build and Test | |
| on: | |
| push: | |
| branches: [ main, master, develop ] | |
| pull_request: | |
| branches: [ main, master, develop ] | |
| workflow_dispatch: | |
| jobs: | |
| build-and-test: | |
| name: Build and Test treebase-core | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| checks: write | |
| pull-requests: write | |
| services: | |
| postgres: | |
| image: postgres:12 | |
| env: | |
| POSTGRES_DB: treebasedb | |
| POSTGRES_USER: treebase_user | |
| POSTGRES_PASSWORD: treebase_pass | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up JDK 8 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '8' | |
| distribution: 'temurin' | |
| cache: 'maven' | |
| - name: Configure database properties for tests | |
| run: | | |
| mkdir -p /tmp/mesquite | |
| cat > treebase-core/src/test/resources/jdbc.properties << EOF | |
| jdbc.driverClassName=org.postgresql.Driver | |
| jdbc.url=jdbc:postgresql://localhost:5432/treebasedb | |
| jdbc.username=treebase_user | |
| jdbc.password=treebase_pass | |
| mesquite.folder_dir=/tmp/mesquite | |
| EOF | |
| - name: Initialize database schema | |
| run: | | |
| # Install PostgreSQL client if not already available | |
| sudo apt-get update | |
| sudo apt-get install -y postgresql-client | |
| # Initialize the database with schema and data | |
| # The init_db_uptodate.pg script uses \i commands with relative paths, | |
| # so we must run it from the schema directory | |
| cd treebase-core/db/schema | |
| PGPASSWORD=treebase_pass psql -h localhost -U treebase_user -d treebasedb -f init_db_uptodate.pg | |
| - name: Build treebase-core | |
| run: mvn -B clean compile -f treebase-core/pom.xml | |
| - name: Run tests | |
| run: mvn -B test -f treebase-core/pom.xml | |
| - name: Publish Test Report | |
| uses: dorny/test-reporter@v1 | |
| if: always() | |
| with: | |
| name: JUnit Test Results | |
| path: treebase-core/target/surefire-reports/*.xml | |
| reporter: java-junit | |
| fail-on-error: true |