diff --git a/.Rbuildignore b/.Rbuildignore index 151285cf..da54524e 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -5,4 +5,6 @@ ^_pkgdown\.yml$ ^docs$ ^pkgdown$ -appspec.yml \ No newline at end of file +appspec.yml +^\.positai$ +^\.claude$ diff --git a/.gitignore b/.gitignore index 66a5f25d..230ee3ad 100644 --- a/.gitignore +++ b/.gitignore @@ -9,3 +9,4 @@ .idea *.Rproj +.positai diff --git a/R/groupComparisonPlots.R b/R/groupComparisonPlots.R index 8dec5e40..43852ba8 100644 --- a/R/groupComparisonPlots.R +++ b/R/groupComparisonPlots.R @@ -369,7 +369,7 @@ groupComparisonPlots = function( plot = .makeVolcano(single_label, label_name, log_base_FC, log_base_pval, x.lim, ProteinName, dot.size, y.limdown, y.limup, text.size, FCcutoff, sig, x.axis.size, y.axis.size, legend.size, log_adjp) - print(plot) + if (!isPlotly) print(plot) plots[[i]] = plot } if (address != FALSE) { @@ -423,7 +423,7 @@ groupComparisonPlots = function( plot = .makeComparison(single_protein, log_base_FC, dot.size, x.axis.size, y.axis.size, text.angle, hjust, vjust, y.limdown, y.limup, sig) - print(plot) + if (!isPlotly) print(plot) plots[[i]] = plot } if (address != FALSE) {