From 0bec2fa22a5ae7e8a012357389da6ccb1dda264e Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 21 Aug 2025 16:10:15 -0400 Subject: [PATCH 01/23] preliminary setup for ptm analysis shiny needs fixing to refer to global protein --- R/annotateProteinInfoFromIndra.R | 10 ++++++-- R/utils_getSubnetworkFromIndra.R | 43 ++++++++++++++++++++++++++++++++ 2 files changed, 51 insertions(+), 2 deletions(-) diff --git a/R/annotateProteinInfoFromIndra.R b/R/annotateProteinInfoFromIndra.R index b4470b7..a6f8fb7 100644 --- a/R/annotateProteinInfoFromIndra.R +++ b/R/annotateProteinInfoFromIndra.R @@ -55,13 +55,19 @@ annotateProteinInfoFromIndra <- function(df, proteinIdType) { #' It can be either "Uniprot" or "Uniprot_Mnemonic". #' @return A data frame with populated Uniprot IDs. .populateUniprotIdsInDataFrame <- function(df, proteinIdType) { + # TODO: Handle PTM dataset more robustly + if ("GlobalProtein" %in% colnames(df)) { + protein_ids = df$GlobalProtein + } else { + protein_ids = df$Protein + } df$UniprotId <- NA if (proteinIdType == "Uniprot") { - df$UniprotId <- as.character(df$Protein) + df$UniprotId <- as.character(protein_ids) } if (proteinIdType == "Uniprot_Mnemonic") { - mnemonicProteins <- df$Protein + mnemonicProteins <- protein_ids if (length(mnemonicProteins) > 0) { uniprotMapping <- .callGetUniprotIdsFromUniprotMnemonicIdsApi(as.list(mnemonicProteins)) for (mnemonicId in names(uniprotMapping)) { diff --git a/R/utils_getSubnetworkFromIndra.R b/R/utils_getSubnetworkFromIndra.R index e514d52..2665769 100644 --- a/R/utils_getSubnetworkFromIndra.R +++ b/R/utils_getSubnetworkFromIndra.R @@ -141,6 +141,49 @@ } input$Protein <- as.character(input$Protein) + # TODO: Make PTM processing more robust + if ("GlobalProtein" %in% colnames(input)) { + input$Site <- as.character(input$Protein) + input$Protein <- as.character(input$GlobalProtein) + # Summarize rows by protein: mean adj.pvalue and log2FC, keep other columns + if (any(duplicated(input$Protein))) { + # Get unique proteins + unique_proteins <- unique(input$Protein) + + # Initialize result data frame + result_list <- list() + + for (i in seq_along(unique_proteins)) { + protein <- unique_proteins[i] + protein_rows <- input[input$Protein == protein, , drop = FALSE] + + if (nrow(protein_rows) == 1) { + # Single row, keep as is + result_list[[i]] <- protein_rows + } else { + # Multiple rows, summarize + summarized_row <- protein_rows[1, , drop = FALSE] # Start with first row + + # Calculate mean for adj.pvalue if it exists + if ("adj.pvalue" %in% names(protein_rows) && is.numeric(protein_rows$adj.pvalue)) { + summarized_row$adj.pvalue <- mean(protein_rows$adj.pvalue, na.rm = TRUE) + } + + # Calculate mean for log2FC if it exists + if ("log2FC" %in% names(protein_rows) && is.numeric(protein_rows$log2FC)) { + summarized_row$log2FC <- mean(protein_rows$log2FC, na.rm = TRUE) + } + + result_list[[i]] <- summarized_row + } + } + + # Combine all results + input <- do.call(rbind, result_list) + rownames(input) <- NULL + } + } + return(input) } #' Add additional metadata to an edge From 3e616c85d730abe674153a7eae746992544386b8 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Sun, 8 Jun 2025 18:38:13 -0400 Subject: [PATCH 02/23] Add preliminary PTM data and vignette to PTM feature branch --- inst/extdata/2_egf_data.csv | 633 ++++++++++++++++++++++++++++++++++++ vignettes/PTM-Analysis.Rmd | 104 ++++++ 2 files changed, 737 insertions(+) create mode 100644 inst/extdata/2_egf_data.csv create mode 100644 vignettes/PTM-Analysis.Rmd diff --git a/inst/extdata/2_egf_data.csv b/inst/extdata/2_egf_data.csv new file mode 100644 index 0000000..f457fe9 --- /dev/null +++ b/inst/extdata/2_egf_data.csv @@ -0,0 +1,633 @@ +"Protein","Label","log2FC","Tvalue","pvalue","adj.pvalue","GlobalProtein" +"Q13480_Y659","This study (HEK293F TR) 1min",1.70376713958474,11.3151143700444,5.96335812410164e-08,9.49193483604991e-05,"Q13480" +"Q13480_T638","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480" +"Q13480_S650","This study (HEK293F TR) 1min",1.06751538239836,7.50672863997618,5.48699890642222e-06,0.001124729874958,"Q13480" +"Q13480_Y265","This study (HEK293F TR) 1min",0.586083652098868,5.60798678181296,9.69062701618218e-05,0.0071061337032964,"Q13480" +"P84103_S150","This study (HEK293F TR) 1min",-1.10504046382547,-5.22069888817077,0.000184969365551,0.0106146248093664,"P84103" +"P84103_S148","This study (HEK293F TR) 1min",-1.10960028782523,-5.08641427759661,0.0002325701098662,0.012320066445345,"P84103" +"Q13480_S651","This study (HEK293F TR) 1min",1.0861403567649,5.08102358287817,0.0002347301004535,0.0123416586748211,"Q13480" +"Q13480_S634","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480" +"Q13480_S637","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480" +"Q13480_S266","This study (HEK293F TR) 1min",0.366472954535347,4.37076222805317,0.0008205492144159,0.0260878607518859,"Q13480" +"P84103_S152","This study (HEK293F TR) 1min",-0.939674889678251,-3.92826734122249,0.0018447735121165,0.042278987184565,"P84103" +"Q13480_S389","This study (HEK293F TR) 1min",-0.444828839203883,-3.76541404142624,0.0024975699639907,0.0505279191198013,"Q13480" +"P00533_Y1110","This study (HEK293F TR) 1min",0.4729517886929,3.75948401069197,0.0025253801476862,0.0508611561744001,"P00533" +"P21333_S2158","This study (HEK293F TR) 1min",0.532989570430392,3.71177765595511,0.0027609471504149,0.0535930036360831,"P21333" +"Q99808_S269","This study (HEK293F TR) 1min",0.446638577272779,3.56969435793941,0.0036043463347816,0.0621972219601596,"Q99808" +"P00533_S1064","This study (HEK293F TR) 1min",0.403387983895019,3.4988557092615,0.004118602371085,0.0668151288042883,"P00533" +"Q13480_S500","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480" +"Q13480_T503","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480" +"Q13480_S419","This study (HEK293F TR) 1min",0.332355122205279,3.21384635543824,0.0070593860768096,0.0889962409780329,"Q13480" +"Q99808_S273","This study (HEK293F TR) 1min",0.348067131600315,2.85760689456946,0.0138639473793892,0.125844141931789,"Q99808" +"Q2TAK8_S235","This study (HEK293F TR) 1min",-0.395245276338771,-2.71933672863498,0.0179984120064434,0.143797021787113,"Q2TAK8" +"P84103_S158","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103" +"P84103_S160","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103" +"P21333_S2152","This study (HEK293F TR) 1min",0.235388239881175,2.19158101317147,0.0479216138099419,0.233355984429484,"P21333" +"P21333_S1084","This study (HEK293F TR) 1min",0.224443985987218,2.0704753520104,0.059626425674296,0.261572734421199,"P21333" +"Q13480_S648","This study (HEK293F TR) 1min",0.452818744361604,2.05689686498815,0.0610934625343971,0.26455777067529,"Q13480" +"P00533_T1041","This study (HEK293F TR) 1min",0.271657661801562,2.00737595652264,0.0667322021046199,0.276099869901749,"P00533" +"Q99808_S266","This study (HEK293F TR) 1min",0.421718743267295,1.97693638440734,0.0704329417495169,0.282109132661713,"Q99808" +"Q13480_S646","This study (HEK293F TR) 1min",-0.443829611103984,-1.92563949426819,0.0770987976152556,0.294165738271523,"Q13480" +"O95671_S223","This study (HEK293F TR) 1min",0.386873469280648,1.91311856681102,0.0788112010283812,0.297352889764751,"O95671" +"Q9ULI4_S1059","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4" +"Q9BRP8_T68","This study (HEK293F TR) 1min",-0.217853231282572,-1.69865188465098,0.114011221758164,0.359719656961002,"Q9BRP8" +"Q13480_S253","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480" +"Q13480_S256","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480" +"P21333_S977","This study (HEK293F TR) 1min",-0.292568293874517,-1.68808958236406,0.116060371830274,0.36242335903682,"P21333" +"Q9BRP8_S55","This study (HEK293F TR) 1min",0.271474908656177,1.64304570139027,0.125167558329347,0.375524351863621,"Q9BRP8" +"Q13480_S418","This study (HEK293F TR) 1min",0.181323359909273,1.59674837782528,0.13517349095986,0.389512427331363,"Q13480" +"Q13480_S692","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480" +"Q13480_T684","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480" +"Q13480_T369","This study (HEK293F TR) 1min",-0.251957076418126,-1.39200273990806,0.188089661184504,0.45798216891286,"Q13480" +"P00533_S695","This study (HEK293F TR) 1min",-0.168567207702282,-1.3339621543218,0.205910161052075,0.478556124383805,"P00533" +"O95671_T234","This study (HEK293F TR) 1min",-0.156675662315562,-1.29897946821877,0.217301232302363,0.491577787708395,"O95671" +"O95671_S228","This study (HEK293F TR) 1min",0.162546456010681,1.28081940357915,0.223412290527193,0.498207287543873,"O95671" +"P26583_T179","This study (HEK293F TR) 1min",0.333007351272826,1.24722589564544,0.235079770638176,0.51066542362367,"P26583" +"P26583_S181","This study (HEK293F TR) 1min",0.330986639809748,1.22712453257631,0.242289787055476,0.518593228471161,"P26583" +"Q9BRP8_S64","This study (HEK293F TR) 1min",0.253341533263867,1.05817473499178,0.309911354836916,0.584520502733944,"Q9BRP8" +"Q13480_T387","This study (HEK293F TR) 1min",-0.108576383788634,-1.00300191798484,0.334800326491917,0.607980734215025,"Q13480" +"Q13480_S381","This study (HEK293F TR) 1min",-0.14544164513781,-0.977526453196785,0.346769414529359,0.618941697273364,"Q13480" +"Q9BRP8_T112","This study (HEK293F TR) 1min",0.264359185664373,0.9218428134622,0.373986162515971,0.64218907092272,"Q9BRP8" +"P00533_T693","This study (HEK293F TR) 1min",-0.100727642101091,-0.897999989178961,0.386083280139053,0.652213608541932,"P00533" +"O95671_T249","This study (HEK293F TR) 1min",-0.0965557732785615,-0.886808870104599,0.391852935916219,0.65697319746248,"O95671" +"Q9BRP8_T72","This study (HEK293F TR) 1min",0.164745862786635,0.87455092473495,0.398239695546514,0.661872791180291,"Q9BRP8" +"P00533_S1042","This study (HEK293F TR) 1min",-0.0770847337352726,-0.738315704706098,0.473898731438467,0.722176047660012,"P00533" +"P84103_S5","This study (HEK293F TR) 1min",-0.125625140776993,-0.711473446111361,0.489799939092637,0.733859605703944,"P84103" +"P26583_S168","This study (HEK293F TR) 1min",0.261442060514788,0.687373048408072,0.50434819267248,0.742911602813247,"P26583" +"P00533_S991","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533" +"P00533_S995","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533" +"P84103_S138","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103" +"P84103_S140","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103" +"Q9ULI4_S1262","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4" +"Q9ULI4_S879","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4" +"Q9BRP8_S126","This study (HEK293F TR) 1min",0.0971218156828257,0.516730648927641,0.614325294369067,0.814900075274285,"Q9BRP8" +"P21333_S2339","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333" +"P21333_T2336","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333" +"Q9BRP8_S131","This study (HEK293F TR) 1min",0.106411616104776,0.393890119434163,0.70027040804751,0.864225244902764,"Q9BRP8" +"Q13480_S401","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480" +"Q13480_S402","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480" +"Q9BRP8_S117","This study (HEK293F TR) 1min",-0.0682104620799144,-0.321055481667722,0.753450037173131,0.893447041469526,"Q9BRP8" +"P21333_S1459","This study (HEK293F TR) 1min",-0.0301357324557081,-0.309028903741594,0.762367953656862,0.89823761092272,"P21333" +"O95671_S21","This study (HEK293F TR) 1min",0.0361812416067515,0.300822870748626,0.768473367421129,0.901359831579359,"O95671" +"P00533_S1045","This study (HEK293F TR) 1min",0.0291655004487889,0.264608048034519,0.795605590500253,0.914135909932564,"P00533" +"P00533_S1039","This study (HEK293F TR) 1min",0.0318122946808987,0.217614660629752,0.831226107627063,0.930639948749166,"P00533" +"O95671_S239","This study (HEK293F TR) 1min",0.0231111665258367,0.173794281189501,0.864798021392135,0.944482708489422,"O95671" +"Q13480_S274","This study (HEK293F TR) 1min",0.0137576395281051,0.0830030475697277,0.935157887951278,0.973627044957429,"Q13480" +"Q13480_S367","This study (HEK293F TR) 1min",-0.0155050786974335,-0.0749903486078975,0.9414040905418,0.976574672126427,"Q13480" +"Q13480_T638","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480" +"Q13480_Y659","This study (HEK293F TR) 2min",1.53392426207866,10.1871482652472,1.97505081494113e-07,7.73451844140002e-05,"Q13480" +"Q13480_S650","This study (HEK293F TR) 2min",0.896359565618345,6.30316727411138,3.20069618421293e-05,0.0019890674032445,"Q13480" +"P84103_S150","This study (HEK293F TR) 2min",-1.18411375056542,-5.59427599568965,9.91141101890676e-05,0.0042123923678373,"P84103" +"Q13480_Y265","This study (HEK293F TR) 2min",0.580689647874493,5.55637383495289,0.0001054971830743,0.0043863112430809,"Q13480" +"P84103_S148","This study (HEK293F TR) 2min",-1.19493437282168,-5.47758622758076,0.0001201889852968,0.0048168619697193,"P84103" +"Q13480_S651","This study (HEK293F TR) 2min",1.09278736799033,5.11211866242446,0.0002225530163094,0.0073849586306375,"Q13480" +"Q13480_S266","This study (HEK293F TR) 2min",0.4038022568649,4.81597244780447,0.0003716011999828,0.01040040726645,"Q13480" +"Q13480_S419","This study (HEK293F TR) 2min",0.476692890568188,4.6095805560344,0.0005348342755941,0.0131034397520578,"Q13480" +"P21333_S2158","This study (HEK293F TR) 2min",0.649109433673935,4.52044472509101,0.0006269666756207,0.0146340665445381,"P21333" +"Q13480_S418","This study (HEK293F TR) 2min",0.511031965638642,4.50018939952721,0.0006501138216861,0.0149829828600927,"Q13480" +"Q99808_S269","This study (HEK293F TR) 2min",0.491633864941996,3.9293126997034,0.0018412032290874,0.0285065864238666,"Q99808" +"P84103_S152","This study (HEK293F TR) 2min",-0.928196684000575,-3.8802832341715,0.0020165446810385,0.0301796676361804,"P84103" +"P00533_S1064","This study (HEK293F TR) 2min",0.436525530785271,3.78627997512177,0.0024021799478382,0.0337082052956873,"P00533" +"Q99808_S273","This study (HEK293F TR) 2min",0.450972396950133,3.70245195189826,0.0028095580813648,0.0371139948346673,"Q99808" +"Q13480_S500","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480" +"Q13480_T503","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480" +"Q2TAK8_S235","This study (HEK293F TR) 2min",-0.434520604850169,-2.98955588049831,0.0107994170685152,0.08403652994981,"Q2TAK8" +"P21333_S2152","This study (HEK293F TR) 2min",0.32018683815949,2.98109793221604,0.010973878827176,0.0847898952963221,"P21333" +"Q13480_S634","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480" +"Q13480_S637","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480" +"Q13480_S648","This study (HEK293F TR) 2min",0.633940882545705,2.87963126556173,0.013298278653527,0.0944547234203235,"Q13480" +"P00533_Y1110","This study (HEK293F TR) 2min",0.360094363283572,2.86238266451284,0.0137393011954488,0.0961498328009507,"P00533" +"P21333_S977","This study (HEK293F TR) 2min",-0.469231782120286,-2.7074201124853,0.0184068657711229,0.114576518873285,"P21333" +"Q13480_S389","This study (HEK293F TR) 2min",-0.312408532177169,-2.6444946236548,0.020718892461938,0.122596915174104,"Q13480" +"P00533_T1041","This study (HEK293F TR) 2min",0.329817671278109,2.43714113921656,0.0305182449356552,0.153714275915501,"P00533" +"Q13480_S253","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480" +"Q13480_S256","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480" +"P84103_S158","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103" +"P84103_S160","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103" +"Q9ULI4_S1059","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4" +"Q13480_S646","This study (HEK293F TR) 2min",-0.430733838418522,-1.8688209845064,0.0851514044386808,0.274651964257931,"Q13480" +"P84103_S5","This study (HEK293F TR) 2min",-0.326571020989046,-1.84952317876912,0.0880555036238635,0.279807922032812,"P84103" +"P21333_S1084","This study (HEK293F TR) 2min",0.197434612274215,1.8213163366773,0.0924615508268959,0.286984111506247,"P21333" +"Q13480_S274","This study (HEK293F TR) 2min",0.281472158278026,1.69818717050822,0.114100702850856,0.323691277906633,"Q13480" +"Q9BRP8_S64","This study (HEK293F TR) 2min",0.399533854596605,1.66880110521659,0.119886338958943,0.332745619487633,"Q9BRP8" +"O95671_T234","This study (HEK293F TR) 2min",-0.189141689965618,-1.56815148069831,0.141694719619396,0.366645882964786,"O95671" +"Q9BRP8_T72","This study (HEK293F TR) 2min",0.291158427826943,1.54561011726411,0.147024551772785,0.374806075800659,"Q9BRP8" +"P84103_S138","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103" +"P84103_S140","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103" +"Q13480_S367","This study (HEK293F TR) 2min",0.306902684123715,1.48433553419799,0.162388208749263,0.395807221118104,"Q13480" +"Q13480_T369","This study (HEK293F TR) 2min",-0.260020218164765,-1.43654967450165,0.175294781386693,0.412690032824256,"Q13480" +"Q9ULI4_S1262","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4" +"P00533_S1045","This study (HEK293F TR) 2min",0.150452844596394,1.36500430019351,0.196214317150538,0.438566907553858,"P00533" +"Q9BRP8_T68","This study (HEK293F TR) 2min",-0.16579615527638,-1.29275085785997,0.219381860614282,0.466298693591792,"Q9BRP8" +"P00533_S1042","This study (HEK293F TR) 2min",0.131773109895089,1.26211964132385,0.229848400038462,0.47823367861317,"P00533" +"Q9BRP8_S117","This study (HEK293F TR) 2min",-0.198247036676712,-0.933116356474329,0.368358889085155,0.613409357231576,"Q9BRP8" +"P26583_T179","This study (HEK293F TR) 2min",0.247496358028005,0.926958115580953,0.371425453330428,0.616125033041865,"P26583" +"P26583_S168","This study (HEK293F TR) 2min",-0.343340232494674,-0.902696458964186,0.38367941486351,0.627236966756459,"P26583" +"O95671_T249","This study (HEK293F TR) 2min",0.0821012646494896,0.754052577756511,0.464726100044519,0.693298187888527,"O95671" +"P00533_S695","This study (HEK293F TR) 2min",-0.0908929544419194,-0.719284390912856,0.485139735829573,0.708988059738136,"P00533" +"P26583_S181","This study (HEK293F TR) 2min",0.174684425506943,0.647638056091278,0.528884652253245,0.741153486016639,"P26583" +"O95671_S239","This study (HEK293F TR) 2min",0.080256664347921,0.603524243374771,0.556907186371671,0.761985173089798,"O95671" +"P21333_S2339","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333" +"P21333_T2336","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333" +"P00533_T693","This study (HEK293F TR) 2min",0.0637686410983846,0.568505703318612,0.579718799597352,0.777224259072107,"P00533" +"Q9ULI4_S879","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4" +"Q13480_S401","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480" +"Q13480_S402","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480" +"P00533_S1039","This study (HEK293F TR) 2min",0.07711090241499,0.527483572883148,0.607054163964584,0.794490308538127,"P00533" +"P21333_S1459","This study (HEK293F TR) 2min",0.0513012072480769,0.526071694450907,0.60800641233835,0.79514604834379,"P21333" +"Q99808_S266","This study (HEK293F TR) 2min",0.107278422718196,0.502900619238089,0.623740056153892,0.805258346689767,"Q99808" +"Q9BRP8_S131","This study (HEK293F TR) 2min",-0.100860850372776,-0.373343567683875,0.715120630373446,0.860345181267785,"Q9BRP8" +"O95671_S223","This study (HEK293F TR) 2min",-0.053394822381362,-0.264041435199212,0.796032418590052,0.90453729804921,"O95671" +"Q9BRP8_T112","This study (HEK293F TR) 2min",0.0741987887600501,0.258737444716187,0.800031208816391,0.90621850559117,"Q9BRP8" +"O95671_S228","This study (HEK293F TR) 2min",0.024946759661848,0.196573303506667,0.847307701707302,0.93027900165439,"O95671" +"Q13480_S692","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480" +"Q13480_T684","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480" +"O95671_S21","This study (HEK293F TR) 2min",-0.0211222359114024,-0.17561729120739,0.863395391360773,0.937534798880188,"O95671" +"Q9BRP8_S55","This study (HEK293F TR) 2min",0.0261460947034706,0.15824382711217,0.876781556764774,0.944422108219874,"Q9BRP8" +"Q13480_T387","This study (HEK293F TR) 2min",-0.0148992409276118,-0.137635521698756,0.892711300521128,0.952203158960805,"Q13480" +"P00533_S991","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533" +"P00533_S995","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533" +"Q13480_S381","This study (HEK293F TR) 2min",0.0123554922163631,0.0830423808278424,0.935127236886922,0.97237231049062,"Q13480" +"Q9BRP8_S126","This study (HEK293F TR) 2min",0.0025408843401635,0.0135186189087582,0.989426489479751,0.995844391033133,"Q9BRP8" +"Q13480_T638","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480" +"Q13480_Y659","This study (HEK293F TR) 3min",1.21276599288191,8.0542614038816,2.61257827330921e-06,0.0002647072889936,"Q13480" +"P84103_S150","This study (HEK293F TR) 3min",-1.47891469175969,-6.98704575960999,1.14811459927821e-05,0.0007134939379368,"P84103" +"P84103_S148","This study (HEK293F TR) 3min",-1.49208154426403,-6.83971061773762,1.42438692967131e-05,0.0008172502822182,"P84103" +"Q13480_S418","This study (HEK293F TR) 3min",0.67591857726473,5.95219442398075,5.55243504261198e-05,0.0021139953881759,"Q13480" +"Q13480_Y265","This study (HEK293F TR) 3min",0.573283167282483,5.48550435222461,0.0001186197335806,0.0036444916027821,"Q13480" +"P84103_S152","This study (HEK293F TR) 3min",-1.27252645747826,-5.31973789941863,0.0001564738994305,0.0044018766360321,"P84103" +"Q13480_S650","This study (HEK293F TR) 3min",0.70013849495635,4.9233479710903,0.0003081487892753,0.0071755477627244,"Q13480" +"Q13480_S266","This study (HEK293F TR) 3min",0.400521317427366,4.77684212184553,0.0003979930144865,0.0086283696457855,"Q13480" +"Q13480_S419","This study (HEK293F TR) 3min",0.464803885054938,4.49461486275724,0.0006566386574765,0.0121944001790981,"Q13480" +"P21333_S2158","This study (HEK293F TR) 3min",0.602485166897726,4.19574998199223,0.0011276606624867,0.0175804613172465,"P21333" +"Q99808_S269","This study (HEK293F TR) 3min",0.511424131815868,4.0874835510283,0.0013750662085058,0.0200065180847649,"Q99808" +"Q13480_S651","This study (HEK293F TR) 3min",0.861180623684671,4.0286497327957,0.0015323453317053,0.0215127806369725,"Q13480" +"P00533_T1041","This study (HEK293F TR) 3min",0.504292168698397,3.7263958166852,0.0026864706403833,0.0314165887194938,"P00533" +"P00533_S1042","This study (HEK293F TR) 3min",0.297204100764812,2.84661364792789,0.0141551315696634,0.0928798746066363,"P00533" +"Q13480_S500","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480" +"Q13480_T503","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480" +"Q13480_S648","This study (HEK293F TR) 3min",0.61957213253876,2.81436224299785,0.0150446979398548,0.0967519439370365,"Q13480" +"P21333_S2152","This study (HEK293F TR) 3min",0.297910905400229,2.77369797327789,0.0162452281908146,0.101415523104677,"P21333" +"Q13480_S634","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480" +"Q13480_S637","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480" +"Q99808_S273","This study (HEK293F TR) 3min",0.316701505231324,2.6000972878668,0.0225184300074042,0.12369218433211,"Q99808" +"Q2TAK8_S235","This study (HEK293F TR) 3min",-0.366101986456474,-2.51882726447567,0.026214385895867,0.13562927998949,"Q2TAK8" +"P00533_S1064","This study (HEK293F TR) 3min",0.282900441162347,2.4537860898977,0.0295893548436515,0.145978585967694,"P00533" +"P00533_T693","This study (HEK293F TR) 3min",0.265319395778178,2.36535681336266,0.0348552902087417,0.160758176136729,"P00533" +"P26583_T179","This study (HEK293F TR) 3min",0.612900233528975,2.29552002315468,0.0396366690395622,0.173481258839896,"P26583" +"P00533_S1045","This study (HEK293F TR) 3min",0.252779247922989,2.29337478689872,0.0397930074469168,0.173823155670434,"P00533" +"P21333_S1084","This study (HEK293F TR) 3min",0.241630363044717,2.22901811684053,0.0447648057798837,0.186446341824665,"P21333" +"P00533_Y1110","This study (HEK293F TR) 3min",0.278752634772754,2.21579894276898,0.0458563654579875,0.189188180668351,"P00533" +"O95671_T234","This study (HEK293F TR) 3min",-0.257734607186693,-2.13684728078976,0.0529161454021445,0.205325352168615,"O95671" +"P26583_S181","This study (HEK293F TR) 3min",0.564021512901842,2.09109538614759,0.0574611678902723,0.21479593994013,"P26583" +"P21333_S977","This study (HEK293F TR) 3min",-0.359691674572552,-2.07538472699108,0.0591041226527984,0.218914181358432,"P21333" +"P84103_S5","This study (HEK293F TR) 3min",-0.35624792552462,-2.01759725541692,0.0655303378255179,0.232673487754517,"P84103" +"Q9BRP8_S64","This study (HEK293F TR) 3min",0.467693969457141,1.95349706702888,0.0734103020374468,0.248808622047895,"Q9BRP8" +"Q13480_S646","This study (HEK293F TR) 3min",-0.42985113345325,-1.86499120050734,0.0857207449212001,0.272445650025557,"Q13480" +"Q9BRP8_T68","This study (HEK293F TR) 3min",-0.237984925053956,-1.85562334366792,0.0871279499819063,0.275320723179913,"Q9BRP8" +"Q9BRP8_T72","This study (HEK293F TR) 3min",0.335475150315677,1.78086476935779,0.0991269222995888,0.2959298865747,"Q9BRP8" +"Q9ULI4_S1059","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4" +"Q9ULI4_S879","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4" +"Q13480_S253","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480" +"Q13480_S256","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480" +"Q13480_S274","This study (HEK293F TR) 3min",0.261948487877737,1.58039631404186,0.138869871666238,0.359370971056622,"Q13480" +"P84103_S158","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103" +"P84103_S160","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103" +"Q9ULI4_S1262","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4" +"P21333_S1459","This study (HEK293F TR) 3min",0.128046899040161,1.31306557410044,0.212654616503816,0.458170323209666,"P21333" +"P84103_S138","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103" +"P84103_S140","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103" +"Q9BRP8_S126","This study (HEK293F TR) 3min",0.233272080040749,1.241109759416,0.237255274834602,0.48663121029903,"Q9BRP8" +"P00533_S1039","This study (HEK293F TR) 3min",0.16484935201419,1.1276657705281,0.280551339632174,0.532780847148919,"P00533" +"Q13480_S389","This study (HEK293F TR) 3min",-0.129457523956244,-1.09583987258005,0.293725108851004,0.546812980420113,"Q13480" +"Q99808_S266","This study (HEK293F TR) 3min",0.227100806241164,1.06460491489665,0.307102055594803,0.560031662695483,"Q99808" +"Q13480_S367","This study (HEK293F TR) 3min",0.210024359757735,1.01578329666847,0.328909048077413,0.581941195531104,"Q13480" +"Q13480_T387","This study (HEK293F TR) 3min",0.0993114434855506,0.9174146791236,0.376212760642871,0.624149897397659,"Q13480" +"O95671_S223","This study (HEK293F TR) 3min",0.181459919886247,0.897333028578877,0.386425496565956,0.632902171189564,"O95671" +"P21333_S2339","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333" +"P21333_T2336","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333" +"Q9BRP8_T112","This study (HEK293F TR) 3min",0.244564227534452,0.85281612218611,0.409736346758745,0.653017716258668,"Q9BRP8" +"Q13480_T369","This study (HEK293F TR) 3min",-0.152031430268384,-0.839937383360218,0.416652207970843,0.658684797446664,"Q13480" +"Q13480_S692","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480" +"Q13480_T684","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480" +"O95671_S228","This study (HEK293F TR) 3min",0.0931621164762965,0.734090729443533,0.476380289409323,0.703636471156852,"O95671" +"P00533_S695","This study (HEK293F TR) 3min",-0.0904038576144969,-0.715413907047852,0.487445586040152,0.711230850184818,"P00533" +"Q9BRP8_S55","This study (HEK293F TR) 3min",0.113338480966059,0.685957700014308,0.505210471170108,0.724000517658459,"Q9BRP8" +"O95671_T249","This study (HEK293F TR) 3min",-0.0727469521861507,-0.668138634089087,0.516140753807215,0.732110650964711,"O95671" +"Q9BRP8_S117","This study (HEK293F TR) 3min",-0.127808572587547,-0.60157403398447,0.558164581145576,0.761404260960582,"Q9BRP8" +"P00533_S991","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533" +"P00533_S995","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533" +"Q9BRP8_S131","This study (HEK293F TR) 3min",0.106617881560162,0.394653625598538,0.699721002291539,0.851916261416113,"Q9BRP8" +"O95671_S239","This study (HEK293F TR) 3min",0.0381413204037883,0.286819938568845,0.778928903207655,0.894995549342756,"O95671" +"P26583_S168","This study (HEK293F TR) 3min",0.076170004265748,0.2002631402396,0.844482219885772,0.929597868544003,"P26583" +"O95671_S21","This study (HEK293F TR) 3min",-0.015083524334118,-0.125409435654896,0.902185294547149,0.956937827880533,"O95671" +"Q13480_S381","This study (HEK293F TR) 3min",0.0149134770863756,0.100234828527022,0.921740798333989,0.965375681864678,"Q13480" +"Q13480_S401","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480" +"Q13480_S402","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480" +"Q13480_Y659","This study (HEK293F TR) 5min",0.96149464558723,6.38550986706809,2.81957799208171e-05,0.0010275216902753,"Q13480" +"Q13480_S418","This study (HEK293F TR) 5min",0.687774707113656,6.05660047576046,4.70479376330071e-05,0.0014777125312701,"Q13480" +"Q13480_T638","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480" +"P84103_S150","This study (HEK293F TR) 5min",-0.987065216025538,-4.66333174625761,0.0004861886098434,0.0078168799529186,"P84103" +"P84103_S148","This study (HEK293F TR) 5min",-0.990302361639888,-4.53955187886192,0.0006059155595428,0.0091351796830444,"P84103" +"Q13480_S389","This study (HEK293F TR) 5min",-0.524029613808988,-4.43583754482056,0.0007297187629433,0.0104215666917261,"Q13480" +"Q13480_S266","This study (HEK293F TR) 5min",0.35869793972493,4.27803303580211,0.0009706780466285,0.0128419139449146,"Q13480" +"P00533_T1041","This study (HEK293F TR) 5min",0.51668972589909,3.81800581612068,0.0022642300532271,0.0236302672411981,"P00533" +"Q9BRP8_T68","This study (HEK293F TR) 5min",-0.449612949618791,-3.50573585591129,0.0040655454290081,0.0357014073862877,"Q9BRP8" +"Q13480_T387","This study (HEK293F TR) 5min",-0.36363813432121,-3.35919961090824,0.005361202267745,0.0432958761861446,"Q13480" +"P84103_S152","This study (HEK293F TR) 5min",-0.774282656761766,-3.23685277412668,0.0067582903348887,0.0505800576360409,"P84103" +"P21333_S977","This study (HEK293F TR) 5min",-0.554994186821087,-3.20226054791542,0.0072160818400963,0.052954063985109,"P21333" +"P26583_T179","This study (HEK293F TR) 5min",0.847039146571802,3.17244996001376,0.0076355062981983,0.0549824951255408,"P26583" +"Q13480_S500","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480" +"Q13480_T503","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480" +"Q13480_S634","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480" +"Q13480_S637","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480" +"Q99808_S269","This study (HEK293F TR) 5min",0.384654730496244,3.07429740975676,0.0091969808085241,0.061910862760574,"Q99808" +"Q13480_S651","This study (HEK293F TR) 5min",0.645065267756046,3.01765035941256,0.0102394897843786,0.0662793053168823,"Q13480" +"P26583_S181","This study (HEK293F TR) 5min",0.808191366960536,2.9963488979003,0.0106612983882562,0.0679751505998564,"P26583" +"Q13480_S650","This study (HEK293F TR) 5min",0.394430618061241,2.77362150082717,0.0162475724584144,0.0898670516551446,"Q13480" +"Q13480_S253","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480" +"Q13480_S256","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480" +"Q2TAK8_S235","This study (HEK293F TR) 5min",-0.394616259132977,-2.71500901191563,0.0181457103876402,0.0961929294861768,"Q2TAK8" +"P00533_S1042","This study (HEK293F TR) 5min",0.258191118952979,2.47294825708657,0.0285537166113875,0.129105723814067,"P00533" +"P84103_S5","This study (HEK293F TR) 5min",-0.435111633104363,-2.46423901404772,0.0290200076088459,0.130207319686338,"P84103" +"P00533_S991","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533" +"P00533_S995","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533" +"P84103_S158","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103" +"P84103_S160","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103" +"Q13480_Y265","This study (HEK293F TR) 5min",0.229185052774778,2.1929749139859,0.0478004054038426,0.178615327818387,"Q13480" +"P21333_S2158","This study (HEK293F TR) 5min",0.310716541283021,2.16385231391802,0.0503937596017678,0.184191057780002,"P21333" +"P00533_S1045","This study (HEK293F TR) 5min",0.219845820743592,1.99458170099474,0.0682652830941085,0.221518733638866,"P00533" +"P21333_S1084","This study (HEK293F TR) 5min",-0.215233156425089,-1.98550628725211,0.0693723677053264,0.22360397557112,"P21333" +"O95671_T234","This study (HEK293F TR) 5min",-0.235750583933722,-1.9545803325452,0.0732701934695059,0.231368946394844,"O95671" +"Q13480_S419","This study (HEK293F TR) 5min",0.199154802880692,1.92581035959122,0.0770756664195951,0.238815987952407,"Q13480" +"Q9ULI4_S1262","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4" +"P21333_S1459","This study (HEK293F TR) 5min",-0.178003878770223,-1.82535279668287,0.0918190814556798,0.265336980162086,"P21333" +"Q13480_S274","This study (HEK293F TR) 5min",0.239761611121315,1.44653771256631,0.172528113502483,0.386957032025137,"Q13480" +"Q13480_S648","This study (HEK293F TR) 5min",0.315398720212013,1.43267620190939,0.176377680597204,0.392416083222465,"Q13480" +"O95671_S21","This study (HEK293F TR) 5min",-0.163361915657431,-1.35824527453179,0.198292917102341,0.418851344545411,"O95671" +"Q9BRP8_S126","This study (HEK293F TR) 5min",0.245227525123361,1.30471796991252,0.215398448877986,0.438918259879681,"Q9BRP8" +"P26583_S168","This study (HEK293F TR) 5min",0.47404113706089,1.24633006950288,0.235397421024411,0.46361035548845,"P26583" +"Q9ULI4_S879","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4" +"P00533_T693","This study (HEK293F TR) 5min",0.132774787634869,1.18370444668692,0.25845840766427,0.488028626499306,"P00533" +"P00533_S1039","This study (HEK293F TR) 5min",0.165469813249521,1.1319100874664,0.278829016682789,0.508639156695712,"P00533" +"Q13480_S692","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480" +"Q13480_T684","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480" +"P00533_Y1110","This study (HEK293F TR) 5min",0.137000797900502,1.08901651600141,0.296609311793398,0.528055753781991,"P00533" +"Q9ULI4_S1059","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4" +"Q9BRP8_T112","This study (HEK293F TR) 5min",0.279419234387438,0.974358475631675,0.348278971297888,0.578807886905782,"Q9BRP8" +"Q13480_S401","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480" +"Q13480_S402","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480" +"O95671_S228","This study (HEK293F TR) 5min",0.117677154423358,0.927262189792152,0.371273619860154,0.599105890498014,"O95671" +"P00533_S1064","This study (HEK293F TR) 5min",-0.100032805064227,-0.867651901112409,0.401865112469493,0.627669861549287,"P00533" +"Q13480_S367","This study (HEK293F TR) 5min",0.169059921108289,0.817658695381709,0.428797266488978,0.650364201811877,"Q13480" +"Q9BRP8_T72","This study (HEK293F TR) 5min",-0.15158073751136,-0.804664056020953,0.435986978162188,0.656425674076753,"Q9BRP8" +"Q9BRP8_S131","This study (HEK293F TR) 5min",0.210047616710483,0.777506101885433,0.451263200521798,0.668654375007106,"Q9BRP8" +"O95671_S223","This study (HEK293F TR) 5min",0.13702643262045,0.677606073317719,0.510316286685563,0.713592442937221,"O95671" +"O95671_S239","This study (HEK293F TR) 5min",0.0899607512350328,0.676498266700709,0.51099582176578,0.714138859632162,"O95671" +"Q13480_S646","This study (HEK293F TR) 5min",-0.114557429494987,-0.497029276727792,0.627758068696753,0.797448499966613,"Q13480" +"Q9BRP8_S117","This study (HEK293F TR) 5min",0.0989010053581047,0.465510846055656,0.649537420188096,0.81151883638885,"Q9BRP8" +"Q9BRP8_S55","This study (HEK293F TR) 5min",0.0615826623552617,0.372716319028694,0.715575929974441,0.851919681337858,"Q9BRP8" +"P21333_S2152","This study (HEK293F TR) 5min",0.0397315284351869,0.369920193917902,0.717606927778133,0.853209688972964,"P21333" +"Q13480_S381","This study (HEK293F TR) 5min",0.0516821846361104,0.347360637958466,0.734074214966415,0.863572880631665,"Q13480" +"Q9BRP8_S64","This study (HEK293F TR) 5min",-0.0748100203406814,-0.312471754744925,0.759811331094997,0.878046889710519,"Q9BRP8" +"P84103_S138","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103" +"P84103_S140","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103" +"Q99808_S273","This study (HEK293F TR) 5min",-0.0356433470307919,-0.292629395233108,0.774585578182977,0.886125757773408,"Q99808" +"Q13480_T369","This study (HEK293F TR) 5min",-0.0517394563116866,-0.285848153070726,0.77965620173143,0.889364863636702,"Q13480" +"P21333_S2339","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333" +"P21333_T2336","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333" +"Q99808_S266","This study (HEK293F TR) 5min",0.0406590944931011,0.190602017443461,0.851884854642904,0.928673627082712,"Q99808" +"O95671_T249","This study (HEK293F TR) 5min",0.0191085886093507,0.175501322174325,0.863484603973436,0.934855783819616,"O95671" +"P00533_S695","This study (HEK293F TR) 5min",-0.0168234424441156,-0.133132866301596,0.896198489905016,0.95215300248871,"P00533" +"Q13480_S418","This study (HEK293F TR) 7min",1.1037995737909,9.72014957023043,3.34652817160609e-07,4.32857234845081e-05,"Q13480" +"P84103_S150","This study (HEK293F TR) 7min",-1.36644568044178,-6.45569250915216,2.53263208550614e-05,0.0007680864474193,"P84103" +"P84103_S148","This study (HEK293F TR) 7min",-1.37579563187301,-6.30665530803837,3.18349312216953e-05,0.0009070452183221,"P84103" +"Q13480_Y659","This study (HEK293F TR) 7min",0.792176512639632,5.26102871309338,0.0001727592939515,0.0030250736236118,"Q13480" +"P00533_T1041","This study (HEK293F TR) 7min",0.697451166751218,5.15371697488788,0.0002072876990016,0.0034426781998778,"P00533" +"Q13480_S253","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480" +"Q13480_S256","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480" +"P84103_S152","This study (HEK293F TR) 7min",-1.21143888805105,-5.06436414561133,0.0002415390204995,0.0038620414415131,"P84103" +"Q13480_T638","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480" +"Q13480_S419","This study (HEK293F TR) 7min",0.483808265698794,4.67838564102704,0.0004734069385915,0.0063385423968833,"Q13480" +"Q13480_S266","This study (HEK293F TR) 7min",0.375216829491048,4.47504659040579,0.0006800859268684,0.0082694627623141,"Q13480" +"P00533_S1042","This study (HEK293F TR) 7min",0.442948339454276,4.24254842101028,0.0010354069477496,0.011206423562801,"P00533" +"P00533_S1045","This study (HEK293F TR) 7min",0.45594435889104,4.13661843486446,0.0012564974840463,0.0127912843728693,"P00533" +"Q13480_S634","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480" +"Q13480_S637","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480" +"P21333_S977","This study (HEK293F TR) 7min",-0.600796400495767,-3.46653470670927,0.0043774091151049,0.0307596835611823,"P21333" +"Q13480_S401","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480" +"Q13480_S402","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480" +"Q9BRP8_T68","This study (HEK293F TR) 7min",-0.401600997432656,-3.13137559241367,0.008253757372613,0.0478056726253567,"Q9BRP8" +"Q13480_S389","This study (HEK293F TR) 7min",-0.355636325653229,-3.01041186235259,0.0103809274155062,0.0557446080659887,"Q13480" +"Q99808_S269","This study (HEK293F TR) 7min",0.374719370584309,2.99489047979945,0.0106908026195154,0.0568321777262176,"Q99808" +"P00533_S1039","This study (HEK293F TR) 7min",0.397147945491421,2.71672371467789,0.0180872077875341,0.0819442912050481,"P00533" +"Q13480_S500","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480" +"Q13480_T503","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480" +"P21333_S2158","This study (HEK293F TR) 7min",0.361187229992353,2.51533381566802,0.0263857888347521,0.105472616532176,"P21333" +"Q13480_S651","This study (HEK293F TR) 7min",0.505287784467303,2.3637637005457,0.0349579424770295,0.127069626686521,"Q13480" +"P26583_T179","This study (HEK293F TR) 7min",0.583606449226995,2.18580482851037,0.0484269814361419,0.15820527972746,"P26583" +"P26583_S181","This study (HEK293F TR) 7min",0.576724837670714,2.1381926390099,0.0527877313539815,0.166799610776491,"P26583" +"Q13480_S650","This study (HEK293F TR) 7min",0.302522365950496,2.12732607525697,0.0538333383565838,0.168784997987855,"Q13480" +"P84103_S158","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103" +"P84103_S160","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103" +"Q13480_Y265","This study (HEK293F TR) 7min",0.220715253501599,2.11193098416719,0.0553479061411364,0.172044332412882,"Q13480" +"P00533_T693","This study (HEK293F TR) 7min",0.230349261636213,2.05359353343247,0.0614553946063972,0.184228039858047,"P00533" +"P84103_S5","This study (HEK293F TR) 7min",-0.345894897394597,-1.95896325464448,0.0727058111844041,0.206215027951489,"P84103" +"P00533_S991","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533" +"P00533_S995","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533" +"Q9ULI4_S1059","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4" +"O95671_T234","This study (HEK293F TR) 7min",-0.216271417990969,-1.79308086132101,0.0970699753118389,0.248816820353874,"O95671" +"Q2TAK8_S235","This study (HEK293F TR) 7min",-0.24611393744777,-1.6932945428981,0.115046552384683,0.277611651619465,"Q2TAK8" +"Q13480_T387","This study (HEK293F TR) 7min",-0.176926346528642,-1.63440205612056,0.126985038563461,0.29511123705805,"Q13480" +"Q13480_S646","This study (HEK293F TR) 7min",-0.373749564385765,-1.62158383339173,0.129722708424391,0.29928964332467,"Q13480" +"Q13480_S692","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480" +"Q13480_T684","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480" +"P21333_S2152","This study (HEK293F TR) 7min",0.153280640767058,1.42711862819238,0.177941170624865,0.364760549297608,"P21333" +"Q9ULI4_S1262","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4" +"Q13480_S274","This study (HEK293F TR) 7min",0.209465361581399,1.26375337397328,0.229280255517313,0.427468285649164,"Q13480" +"P00533_Y1110","This study (HEK293F TR) 7min",0.152405669772214,1.21146952468655,0.248025052922553,0.448616987841922,"P00533" +"Q9BRP8_S126","This study (HEK293F TR) 7min",0.221764565592352,1.17988473631837,0.25992012882842,0.462220741585782,"Q9BRP8" +"P26583_S168","This study (HEK293F TR) 7min",0.442062866036459,1.16225407349213,0.266750341608761,0.469906075716093,"P26583" +"Q13480_S648","This study (HEK293F TR) 7min",0.231929312793405,1.05352236921237,0.311955791963061,0.517674603234076,"Q13480" +"O95671_T249","This study (HEK293F TR) 7min",-0.11309753638146,-1.03873538623842,0.318520007128247,0.524373265354362,"O95671" +"Q9BRP8_T112","This study (HEK293F TR) 7min",0.291082861844382,1.01503052991669,0.329253915581703,0.535177255873372,"Q9BRP8" +"P21333_S1084","This study (HEK293F TR) 7min",-0.108606213194125,-1.00188243629941,0.335319941974884,0.541342894515348,"P21333" +"Q99808_S273","This study (HEK293F TR) 7min",-0.119598613714306,-0.981896284086366,0.344694853164643,0.550560650271822,"Q99808" +"P00533_S1064","This study (HEK293F TR) 7min",-0.110747413479764,-0.960586917334802,0.354895645676274,0.560282061897437,"P00533" +"Q9BRP8_S131","This study (HEK293F TR) 7min",0.235992512154962,0.873542966462983,0.398767990853891,0.601557072923401,"Q9BRP8" +"P00533_S695","This study (HEK293F TR) 7min",-0.0890833414201246,-0.704963958617947,0.493704257750478,0.682740091089987,"P00533" +"O95671_S223","This study (HEK293F TR) 7min",0.139082224187964,0.687772118109102,0.504105223441676,0.690868238103636,"O95671" +"Q9ULI4_S879","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4" +"Q9BRP8_S55","This study (HEK293F TR) 7min",0.0950606833069915,0.575335112375293,0.575231542512794,0.744759881746609,"Q9BRP8" +"Q9BRP8_T72","This study (HEK293F TR) 7min",-0.0651972218391101,-0.346098467573591,0.734999697278246,0.852100231727844,"Q9BRP8" +"O95671_S239","This study (HEK293F TR) 7min",0.0412077495785574,0.30987926158708,0.761736215153427,0.868171944370563,"O95671" +"Q9BRP8_S117","This study (HEK293F TR) 7min",0.057739839616218,0.271771975355971,0.790214991764914,0.8855885516059,"Q9BRP8" +"O95671_S228","This study (HEK293F TR) 7min",0.0338566919163412,0.266781011482661,0.793969340478379,0.887538324170831,"O95671" +"P21333_S1459","This study (HEK293F TR) 7min",-0.0239298948281394,-0.245390722666535,0.810119427622841,0.896733089700785,"P21333" +"Q99808_S266","This study (HEK293F TR) 7min",-0.0506435705627694,-0.237407321538899,0.816170853856404,0.900644491598715,"Q99808" +"Q13480_S381","This study (HEK293F TR) 7min",0.0326430791622023,0.219397087846569,0.829867354092036,0.909416972496865,"Q13480" +"O95671_S21","This study (HEK293F TR) 7min",0.0259075469099361,0.215403957669805,0.832912125216958,0.911191534998678,"O95671" +"Q13480_T369","This study (HEK293F TR) 7min",0.0283255991048836,0.156492177652125,0.878133467775698,0.93558481852733,"Q13480" +"Q13480_S367","This study (HEK293F TR) 7min",0.0251815521598963,0.121790634656447,0.904992577603532,0.950267622743852,"Q13480" +"P21333_S2339","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333" +"P21333_T2336","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333" +"Q9BRP8_S64","This study (HEK293F TR) 7min",0.0154904149712216,0.0647014547749363,0.949430555085256,0.974015212026464,"Q9BRP8" +"P84103_S138","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103" +"P84103_S140","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103" +"Q13480_S418","This study (HEK293F TR) 9min",1.34281990556529,11.8249822140717,3.58418773652344e-08,1.07838155782486e-05,"Q13480" +"P00533_S1042","This study (HEK293F TR) 9min",0.86346067692395,8.27020536074574,1.96855408160295e-06,0.000110505533616,"P00533" +"Q13480_S401","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480" +"Q13480_S402","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480" +"P00533_T1041","This study (HEK293F TR) 9min",1.02430571177988,7.56896251082995,5.03405987618794e-06,0.0002175092963841,"P00533" +"P00533_S1045","This study (HEK293F TR) 9min",0.786826367251601,7.13859134857336,9.22449929705528e-06,0.0003262827733437,"P00533" +"Q13480_S253","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480" +"Q13480_S256","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480" +"Q13480_S419","This study (HEK293F TR) 9min",0.64730209276652,6.25935733411177,3.42533870901217e-05,0.0008333054567232,"Q13480" +"P84103_S150","This study (HEK293F TR) 9min",-1.19256729892051,-5.63421428930265,9.28257766047161e-05,0.0017109833003386,"P84103" +"P84103_S148","This study (HEK293F TR) 9min",-1.20064152884553,-5.5037478645258,0.0001150855336849,0.0019995301016256,"P84103" +"P00533_S1039","This study (HEK293F TR) 9min",0.76105132314717,5.20603518450171,0.0001896302605604,0.0028711033896398,"P00533" +"Q13480_S266","This study (HEK293F TR) 9min",0.414276614970547,4.94089552385877,0.0002989062372522,0.0039808179392007,"Q13480" +"P84103_S152","This study (HEK293F TR) 9min",-1.10782416697773,-4.63120760462771,0.0005146794136814,0.0058854753903324,"P84103" +"P00533_S991","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533" +"P00533_S995","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533" +"Q9BRP8_T68","This study (HEK293F TR) 9min",-0.493333938082928,-3.84663848570558,0.0021466977465303,0.0164078722359052,"Q9BRP8" +"P84103_S158","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103" +"P84103_S160","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103" +"Q13480_Y659","This study (HEK293F TR) 9min",0.541049789789273,3.59323766089666,0.0034482903376149,0.0230117649619874,"Q13480" +"P21333_S977","This study (HEK293F TR) 9min",-0.574754991480809,-3.31627840010112,0.0058146542047515,0.033288372482313,"P21333" +"Q2TAK8_S235","This study (HEK293F TR) 9min",-0.429348140146745,-2.95396867911318,0.01155260565003,0.0540068515875285,"Q2TAK8" +"O95671_S21","This study (HEK293F TR) 9min",-0.333699201335193,-2.7744860942927,0.0162210876768497,0.0681833052759804,"O95671" +"Q13480_T638","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480" +"P21333_S2158","This study (HEK293F TR) 9min",0.360885642804305,2.51323354082584,0.0264893586038732,0.0953713550960174,"P21333" +"P26583_T179","This study (HEK293F TR) 9min",0.627009335300997,2.34836341242852,0.0359652825163965,0.117471035626303,"P26583" +"P00533_T693","This study (HEK293F TR) 9min",0.252207061284317,2.24845865126947,0.0432040696201188,0.133748566865269,"P00533" +"Q9BRP8_T72","This study (HEK293F TR) 9min",-0.41749554561012,-2.21626879916813,0.0458171403347397,0.13909023711161,"Q9BRP8" +"P26583_S181","This study (HEK293F TR) 9min",0.591827691734299,2.19418608558526,0.0476953210305215,0.143008712308463,"P26583" +"P21333_S1084","This study (HEK293F TR) 9min",-0.236450193628468,-2.18123152523993,0.0488306618067355,0.14524154220171,"P21333" +"Q9ULI4_S1262","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4" +"Q13480_S651","This study (HEK293F TR) 9min",0.404909330680219,1.89418784165381,0.0814661840931408,0.205059731760845,"Q13480" +"P84103_S5","This study (HEK293F TR) 9min",-0.334045621896479,-1.89185531096039,0.0817988906208661,0.205645420079757,"P84103" +"O95671_S228","This study (HEK293F TR) 9min",0.224438688352642,1.76851242414679,0.101246401427713,0.237318948536775,"O95671" +"Q13480_S634","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480" +"Q13480_S637","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480" +"Q9BRP8_S64","This study (HEK293F TR) 9min",-0.411134776057704,-1.71725664992972,0.110479431688592,0.251065564307567,"Q9BRP8" +"Q99808_S273","This study (HEK293F TR) 9min",-0.207065890940088,-1.69999653474901,0.11375265733017,0.255981090465753,"Q99808" +"Q13480_S274","This study (HEK293F TR) 9min",0.28121679147228,1.69664648301734,0.114397807341695,0.257034333940225,"Q13480" +"P00533_S1064","This study (HEK293F TR) 9min",-0.187290803353122,-1.62449929786403,0.129095554115199,0.278115697114315,"P00533" +"Q99808_S269","This study (HEK293F TR) 9min",0.190859872397834,1.52541998010056,0.151943608873438,0.309220191090377,"Q99808" +"Q13480_S692","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480" +"Q13480_T684","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480" +"O95671_T249","This study (HEK293F TR) 9min",0.162366286784415,1.49124033123286,0.160591393142969,0.320549613465477,"O95671" +"Q13480_S650","This study (HEK293F TR) 9min",0.211691794627006,1.48860886107728,0.161274175622051,0.321421425305714,"Q13480" +"Q13480_S500","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480" +"Q13480_T503","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480" +"Q13480_S367","This study (HEK293F TR) 9min",0.274001878414593,1.32521071208301,0.208713224518601,0.380188151115672,"Q13480" +"Q9BRP8_S126","This study (HEK293F TR) 9min",0.217755930625859,1.15855704044504,0.268200033374105,0.44813214631777,"Q9BRP8" +"P84103_S138","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103" +"P84103_S140","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103" +"O95671_S223","This study (HEK293F TR) 9min",0.218493149069754,1.08046514790376,0.300253903449531,0.481974962032279,"O95671" +"P00533_Y1110","This study (HEK293F TR) 9min",0.130269181438862,1.03550703563009,0.319966553711467,0.502006666447852,"P00533" +"P26583_S168","This study (HEK293F TR) 9min",0.373270721538564,0.981388508185086,0.344935460546253,0.526515821002716,"P26583" +"Q99808_S266","This study (HEK293F TR) 9min",-0.19472892269923,-0.912851749006924,0.378516732260439,0.557959942639866,"Q99808" +"Q13480_S648","This study (HEK293F TR) 9min",0.19868154050242,0.902496733801499,0.383781433335196,0.562507173927707,"Q13480" +"Q13480_S381","This study (HEK293F TR) 9min",0.124994378467113,0.840098524303129,0.416565200083806,0.593496857555951,"Q13480" +"Q9ULI4_S1059","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4" +"P00533_S695","This study (HEK293F TR) 9min",0.0942230517222206,0.74563722550437,0.469617348896385,0.640013501811697,"P00533" +"O95671_T234","This study (HEK293F TR) 9min",-0.0872524560456788,-0.723399839387433,0.482695238841633,0.650843863100497,"O95671" +"Q9ULI4_S879","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4" +"P21333_S1459","This study (HEK293F TR) 9min",0.0582392146534189,0.597217959960633,0.560978743612849,0.713614018048643,"P21333" +"Q13480_S646","This study (HEK293F TR) 9min",-0.134850694893446,-0.585075482616889,0.56886369623831,0.719950789050142,"Q13480" +"O95671_S239","This study (HEK293F TR) 9min",0.0650025565003282,0.488814468530832,0.633400661867893,0.768664261154634,"O95671" +"Q13480_S389","This study (HEK293F TR) 9min",-0.04181148155903,-0.353928355987382,0.729265489090173,0.836494724272797,"Q13480" +"Q9BRP8_T112","This study (HEK293F TR) 9min",-0.0818735826436469,-0.285500099354485,0.779916742989811,0.870114664215326,"Q9BRP8" +"Q9BRP8_S55","This study (HEK293F TR) 9min",-0.0407263748641497,-0.246487955314125,0.809288710162003,0.889625328669485,"Q9BRP8" +"Q9BRP8_S117","This study (HEK293F TR) 9min",-0.0407225172113818,-0.191674223855935,0.851062561103756,0.915120834024333,"Q9BRP8" +"Q13480_Y265","This study (HEK293F TR) 9min",0.0143109870543085,0.136935787148897,0.893253075752858,0.939962605124081,"Q13480" +"P21333_S2339","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333" +"P21333_T2336","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333" +"P21333_S2152","This study (HEK293F TR) 9min",-0.0142071497466957,-0.132275595636638,0.896862681473085,0.941935040992472,"P21333" +"Q9BRP8_S131","This study (HEK293F TR) 9min",-0.031191359515386,-0.11545702221769,0.909909062699392,0.949129944207173,"Q9BRP8" +"Q13480_T387","This study (HEK293F TR) 9min",0.0105187450499038,0.0971695786109935,0.924125773034881,0.957486343559405,"Q13480" +"Q13480_T369","This study (HEK293F TR) 9min",0.0013739350822774,0.0075906635613288,0.99406287219463,0.996604381840525,"Q13480" +"Q13480_S418","This study (HEK293F TR) 12min",1.22802565942112,10.8140946681642,1.00231715879494e-07,2.3110904470289e-05,"Q13480" +"Q13480_S419","This study (HEK293F TR) 12min",0.738599752638109,7.14219810241838,9.1769089885754e-06,0.0003545937511537,"Q13480" +"P84103_S150","This study (HEK293F TR) 12min",-1.4276699947204,-6.74494319267636,1.63875691221844e-05,0.000521617557938,"P84103" +"P84103_S148","This study (HEK293F TR) 12min",-1.43263528491908,-6.56720861354789,2.13848044893434e-05,0.0006259210711296,"P84103" +"Q13480_S401","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480" +"Q13480_S402","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480" +"Q13480_S253","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480" +"Q13480_S256","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480" +"P00533_S1042","This study (HEK293F TR) 12min",0.598529044819585,5.73269663265156,7.90474886446553e-05,0.0015894214475115,"P00533" +"P00533_S1045","This study (HEK293F TR) 12min",0.612488360936476,5.55688560584916,0.0001054081747554,0.0019436306304023,"P00533" +"P84103_S152","This study (HEK293F TR) 12min",-1.262820964745,-5.27916453670207,0.0001675468599323,0.0026824350128627,"P84103" +"Q13480_S266","This study (HEK293F TR) 12min",0.439881933079729,5.24627892485434,0.000177123839181,0.0027904922084,"Q13480" +"P00533_T1041","This study (HEK293F TR) 12min",0.635730680478977,4.69764215135396,0.0004575649887099,0.0053948370582447,"P00533" +"Q99808_S269","This study (HEK293F TR) 12min",0.56759342706096,4.53640853540863,0.0006093276000663,0.0065985953883397,"Q99808" +"Q9BRP8_T68","This study (HEK293F TR) 12min",-0.495689206430953,-3.86500305617661,0.0020746221048463,0.01539369601796,"Q9BRP8" +"P84103_S158","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103" +"P84103_S160","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103" +"Q13480_T638","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480" +"Q13480_Y659","This study (HEK293F TR) 12min",0.452361055616073,3.00423512223471,0.0105031563119427,0.0466058670773552,"Q13480" +"P26583_S168","This study (HEK293F TR) 12min",0.994261219026512,2.61407198096008,0.0219361667939551,0.0771707028457242,"P26583" +"O95671_S223","This study (HEK293F TR) 12min",0.522119409154012,2.58191996882663,0.0232983537076516,0.0803923543354305,"O95671" +"O95671_S21","This study (HEK293F TR) 12min",-0.308407207386958,-2.56420004857986,0.0240839078599614,0.0821266251232947,"O95671" +"Q13480_T387","This study (HEK293F TR) 12min",0.261440202541962,2.41512026315417,0.0317903458648704,0.0996462352947721,"Q13480" +"P00533_S1039","This study (HEK293F TR) 12min",0.316931537520061,2.16799667147888,0.0500167990173577,0.136134310437061,"P00533" +"P21333_S977","This study (HEK293F TR) 12min",-0.371776330669387,-2.14511197526313,0.0521318833876477,0.139968632168718,"P21333" +"Q99808_S266","This study (HEK293F TR) 12min",0.457418491059631,2.14428993805316,0.0522093982680528,0.140123379860785,"Q99808" +"Q9BRP8_T72","This study (HEK293F TR) 12min",-0.402712129742984,-2.13779125928544,0.0528260123391726,0.141263634489955,"Q9BRP8" +"Q9BRP8_S126","This study (HEK293F TR) 12min",0.383407056161037,2.03989366900358,0.0629777730243479,0.159392298642819,"Q9BRP8" +"Q13480_S500","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480" +"Q13480_T503","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480" +"Q13480_S389","This study (HEK293F TR) 12min",0.228785992039377,1.93664149214897,0.0756222666353915,0.180882713781091,"Q13480" +"O95671_S228","This study (HEK293F TR) 12min",0.237468371098316,1.87118258314456,0.0848020377383626,0.195212827064335,"O95671" +"Q9ULI4_S1262","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4" +"Q9ULI4_S1267","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4" +"P00533_S991","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533" +"P00533_S995","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533" +"P26583_S181","This study (HEK293F TR) 12min",0.463931752115329,1.72001514861467,0.109964110250647,0.233756638467073,"P26583" +"Q2TAK8_S235","This study (HEK293F TR) 12min",-0.244786646125297,-1.68416261328661,0.116830470117705,0.243571030715184,"Q2TAK8" +"Q9ULI4_S879","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4" +"Q9BRP8_S64","This study (HEK293F TR) 12min",-0.381948637154169,-1.59534993214131,0.135486241778974,0.269611938542504,"Q9BRP8" +"Q9BRP8_S55","This study (HEK293F TR) 12min",0.263269714953562,1.59338546461594,0.135926637898369,0.270281204667307,"Q9BRP8" +"P21333_S2158","This study (HEK293F TR) 12min",0.217817818547985,1.51689893538148,0.15406148739414,0.293802889869716,"P21333" +"Q13480_S634","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480" +"Q13480_S637","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480" +"P00533_Y1110","This study (HEK293F TR) 12min",0.182232933285991,1.44856582698123,0.171970827810516,0.317727807565592,"P00533" +"P26583_T179","This study (HEK293F TR) 12min",0.37595083276565,1.40806385301275,0.183389876434761,0.3317068329613,"P26583" +"P00533_T693","This study (HEK293F TR) 12min",0.142229130541327,1.26799113950133,0.227811765275613,0.384475696343489,"P00533" +"Q9ULI4_S1059","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4" +"P84103_S138","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103" +"P84103_S140","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103" +"Q9BRP8_S131","This study (HEK293F TR) 12min",0.308646201724812,1.14247573442154,0.274576623538234,0.436863068237419,"Q9BRP8" +"P21333_S2339","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333" +"P21333_T2336","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333" +"Q13480_Y265","This study (HEK293F TR) 12min",0.114953294053219,1.09993949032307,0.292002403574503,0.455684267966104,"Q13480" +"Q9BRP8_S117","This study (HEK293F TR) 12min",0.215841379723052,1.01593004969857,0.328841846262963,0.493988590134667,"Q9BRP8" +"Q13480_S367","This study (HEK293F TR) 12min",0.191708380502693,0.92719802108015,0.371305657642422,0.53649590234407,"Q13480" +"Q13480_S274","This study (HEK293F TR) 12min",0.149512763261884,0.902045367299778,0.384012057448678,0.54881259842318,"Q13480" +"O95671_S239","This study (HEK293F TR) 12min",0.108603373215278,0.81668941987864,0.429330865409643,0.59052441578603,"O95671" +"P21333_S1084","This study (HEK293F TR) 12min",-0.0864207147878026,-0.797223231819882,0.440138816950366,0.599946394112229,"P21333" +"P21333_S2152","This study (HEK293F TR) 12min",0.0816936932427836,0.760608716463993,0.460937618461087,0.618414402842063,"P21333" +"Q13480_S648","This study (HEK293F TR) 12min",-0.164182265564548,-0.745786236836282,0.469530461939005,0.626434176494061,"Q13480" +"P84103_S5","This study (HEK293F TR) 12min",-0.124327407381937,-0.704123779913945,0.49420954817595,0.647421593363933,"P84103" +"Q13480_S651","This study (HEK293F TR) 12min",0.147218162711148,0.688694561346873,0.503543869489854,0.655017614046599,"Q13480" +"Q13480_S646","This study (HEK293F TR) 12min",-0.12629115776509,-0.547938296781049,0.593343039718602,0.730381080424971,"Q13480" +"P00533_S695","This study (HEK293F TR) 12min",-0.0667963474886992,-0.528595097536559,0.6063050173937,0.74035260643068,"P00533" +"Q13480_S381","This study (HEK293F TR) 12min",0.078263978246408,0.526019277324531,0.608041779725835,0.74170244337623,"Q13480" +"P00533_S1064","This study (HEK293F TR) 12min",-0.0474659432084152,-0.411704098834701,0.687498272416577,0.800511463689956,"P00533" +"P21333_S1459","This study (HEK293F TR) 12min",0.0375077397661947,0.384625650589643,0.706950920127375,0.814587470561265,"P21333" +"Q13480_S650","This study (HEK293F TR) 12min",0.0409547331526969,0.287992167016107,0.778051879597256,0.863562856129909,"Q13480" +"O95671_T249","This study (HEK293F TR) 12min",0.0298440893599583,0.274100680528459,0.788465134956283,0.870691608475478,"O95671" +"O95671_T234","This study (HEK293F TR) 12min",-0.0237811195920656,-0.197166462389864,0.846853342120868,0.908436985526979,"O95671" +"Q13480_T369","This study (HEK293F TR) 12min",-0.0332424931421329,-0.183656844225451,0.85721556604946,0.914681326521504,"Q13480" +"Q99808_S273","This study (HEK293F TR) 12min",-0.0221335212303035,-0.18171466687479,0.858707590795976,0.915828310495618,"Q99808" +"Q9BRP8_T112","This study (HEK293F TR) 12min",0.0236583320625598,0.0824986025568328,0.935550994272012,0.963302746964072,"Q9BRP8" +"Q13480_S692","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480" 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15min",-1.41677309205398,-5.92275427232507,5.8195448312691e-05,0.0013745993327396,"P84103" +"Q13480_S253","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480" +"Q13480_S256","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480" +"P00533_T1041","This study (HEK293F TR) 15min",0.723730501484713,5.34790441045508,0.0001492403084544,0.0026489081079376,"P00533" +"Q13480_S266","This study (HEK293F TR) 15min",0.420109140926637,5.01045750333784,0.0002650230072609,0.0039448055044581,"Q13480" +"Q13480_S401","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480" +"Q13480_S402","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480" +"Q99808_S269","This study (HEK293F TR) 15min",0.42514576944972,3.39791619383473,0.0049828685300707,0.0317251202424877,"Q99808" +"P00533_S1039","This study (HEK293F TR) 15min",0.46835256947163,3.20380489628238,0.0071949947049766,0.0414213771704189,"P00533" +"Q13480_T638","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480" +"Q13480_Y627","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480" +"P84103_S158","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103" +"P84103_S160","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103" +"P00533_S991","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533" +"P00533_S995","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533" +"P21333_S977","This study (HEK293F TR) 15min",-0.493961862021035,-2.85011018220758,0.0140618674822364,0.0659996886879095,"P21333" +"P00533_T693","This study (HEK293F TR) 15min",0.302970924035009,2.70102506948318,0.0186297949781265,0.0796232112261325,"P00533" +"Q13480_Y659","This study (HEK293F TR) 15min",0.40142027081858,2.66592550662378,0.0199012507037629,0.0834185558368584,"Q13480" +"Q13480_T387","This study (HEK293F TR) 15min",0.283010041859999,2.61437713146848,0.0219236176140641,0.0891084896153846,"Q13480" +"Q9BRP8_T68","This study (HEK293F TR) 15min",-0.324276876289879,-2.52846158771942,0.0257472549046568,0.0994401063525738,"Q9BRP8" +"Q13480_S500","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480" +"Q13480_T503","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480" +"P26583_T179","This study (HEK293F TR) 15min",0.594304072262581,2.22587106855234,0.0450224204893746,0.145255740434629,"P26583" 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15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4" +"Q9BRP8_S126","This study (HEK293F TR) 15min",0.345230442598623,1.83677734378589,0.0900224335815617,0.229808936841792,"Q9BRP8" +"P21333_S2158","This study (HEK293F TR) 15min",0.261661206390812,1.82222743782285,0.0923161811418474,0.233431833428747,"P21333" +"Q9BRP8_T112","This study (HEK293F TR) 15min",0.515214106322935,1.79659511400951,0.0964853757143596,0.240084613911934,"Q9BRP8" +"O95671_S239","This study (HEK293F TR) 15min",0.231370741987128,1.73989104993818,0.106313659496786,0.256044264962412,"O95671" +"Q13480_S274","This study (HEK293F TR) 15min",0.268740390601147,1.62137344705138,0.129768067771291,0.292354386267867,"Q13480" +"P84103_S5","This study (HEK293F TR) 15min",-0.275797441045292,-1.56196884314357,0.143139766362122,0.311761534736955,"P84103" +"Q13480_Y265","This study (HEK293F TR) 15min",0.160439380588173,1.53517662947704,0.14954922262543,0.320779311946034,"Q13480" +"Q9BRP8_S55","This study (HEK293F TR) 15min",0.241586899117331,1.4621547091472,0.168275760731246,0.346375325323939,"Q9BRP8" +"Q13480_S381","This study (HEK293F TR) 15min",0.210201808893093,1.41278537181092,0.18202697812748,0.364557057630292,"Q13480" +"Q99808_S273","This study (HEK293F TR) 15min",0.169516093914348,1.39171531791279,0.188174667079203,0.372163317074396,"Q99808" +"Q13480_S692","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480" +"Q13480_T684","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480" +"Q9ULI4_S1059","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4" +"Q9ULI4_S1062","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4" +"Q9BRP8_S131","This study (HEK293F TR) 15min",0.331919525527716,1.22862358770976,0.241746138067417,0.436189698711396,"Q9BRP8" +"P26583_S168","This study (HEK293F TR) 15min",0.453378525882943,1.19200475549071,0.255304123215189,0.451992083233722,"P26583" +"Q99808_S266","This study (HEK293F TR) 15min",0.250295915548659,1.17333912759733,0.26243991816857,0.460586394412772,"Q99808" +"Q13480_S367","This study (HEK293F TR) 15min",0.228413165524687,1.10472079784831,0.290002886037876,0.490131803250929,"Q13480" +"Q13480_S651","This study (HEK293F TR) 15min",0.214935586237271,1.00548034668756,0.333652019434038,0.534074858721006,"Q13480" +"Q13480_S389","This study (HEK293F TR) 15min",0.116999989141352,0.990388579004969,0.340688634230938,0.541089932556352,"Q13480" +"Q13480_T369","This study (HEK293F TR) 15min",0.177355166169711,0.979844982942209,0.345667591618793,0.546010499175559,"Q13480" +"Q13480_S646","This study (HEK293F TR) 15min",-0.215355438843879,-0.934360682496404,0.3677414175638,0.567613387351433,"Q13480" +"Q2TAK8_S235","This study (HEK293F TR) 15min",-0.127054642270805,-0.874151763358307,0.398448849028704,0.596687577898067,"Q2TAK8" +"P00533_S1064","This study (HEK293F TR) 15min",0.0933249044970843,0.809469761005293,0.433319005715053,0.626870053319967,"P00533" +"P00533_Y1110","This study (HEK293F TR) 15min",0.0967046875601518,0.768703566268617,0.456286824500938,0.646056399640043,"P00533" +"Q9ULI4_S879","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4" +"Q9ULI4_S885","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4" +"Q9BRP8_S117","This study (HEK293F TR) 15min",0.0913532575775306,0.429984832518911,0.674494851065323,0.808414084289545,"Q9BRP8" +"O95671_T249","This study (HEK293F TR) 15min",0.0319545032353651,0.293483610008018,0.773947605181916,0.874876182642409,"O95671" +"O95671_S228","This study (HEK293F TR) 15min",0.0369635109008434,0.29126185306125,0.775607287266316,0.875862006535801,"O95671" +"P21333_S1084","This study (HEK293F TR) 15min",0.0289944901738117,0.267471534088705,0.793449587031667,0.887214175708526,"P21333" +"Q13480_S648","This study (HEK293F TR) 15min",0.0520249411043067,0.236319586128236,0.816996322222741,0.900709375682836,"Q13480" +"O95671_S223","This study (HEK293F TR) 15min",0.0445685528352051,0.220394864717579,0.829106992757838,0.908049038850524,"O95671" +"P21333_S2339","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333" +"P21333_T2336","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333" +"P84103_S138","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103" +"P84103_S140","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103" +"P00533_S695","This study (HEK293F TR) 15min",-0.0245724730021255,-0.194455075039402,0.848930728584608,0.918916067578158,"P00533" +"Q9BRP8_S64","This study (HEK293F TR) 15min",0.0447796224341097,0.187038676571412,0.854618936445188,0.922321519236564,"Q9BRP8" +"Q9BRP8_T72","This study (HEK293F TR) 15min",-0.0304428670675775,-0.161605500102992,0.874188175237224,0.934059364936993,"Q9BRP8" +"O95671_S21","This study (HEK293F TR) 15min",-0.0170432300035212,-0.141703080071516,0.889563082631497,0.942942431396507,"O95671" +"Q13480_S650","This study (HEK293F TR) 15min",0.0018571547029626,0.0130594431026136,0.989785608782202,0.994805705262154,"Q13480" diff --git a/vignettes/PTM-Analysis.Rmd b/vignettes/PTM-Analysis.Rmd new file mode 100644 index 0000000..7dd17c4 --- /dev/null +++ b/vignettes/PTM-Analysis.Rmd @@ -0,0 +1,104 @@ +--- +title: "PTM Analysis" +author: "Anthony Wu" +package: MSstatsBioNet +output: BiocStyle::html_document +vignette: > + %\VignetteIndexEntry{MSstatsBioNet: PTM Analysis} + %\VignetteEngine{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r, include = FALSE} +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>" +) +``` + + +# Installation + +Run this code below to install MSstatsBioNet from bioconductor + +```{r eval = FALSE} +# if (!require("BiocManager", quietly = TRUE)) { +# install.packages("BiocManager") +# } +# +# BiocManager::install("MSstatsBioNet") + +install.packages("devtools") +devtools::install_github("Vitek-Lab/MSstatsBioNet@feature-ptm", build_vignettes = TRUE) +``` + +## Dataset + +We will be taking a subset of the dataset found in this [paper](https://www.biorxiv.org/content/10.1101/2024.10.21.619348v1). The table is the output of the MSstatsPTM function `groupComparisonPTM` (filtered down to the columns that are actually needed) + +```{r} +input = data.table::fread(system.file( + "extdata/2_egf_data.csv", + package = "MSstatsBioNet" +)) +head(input) +``` + +I'm going to do some renaming of the columns such that the PTM analysis goes smoothly. Specifically, the `GlobalProtein` column will be renamed to `Protein` and the `Protein` column will be renamed to `Site`. In the future, you won't need to do this. +```{r} +library(tidyverse) +input <- input %>% + rename(Site = Protein, Protein = GlobalProtein) +``` + +## ID Conversion + +First, we need to convert the group comparison results to a format that can be +processed by INDRA. We can use the `annotateProteinInfoFromIndra` function +to obtain these mappings. + +In the below example, we convert uniprot IDs to their corresponding Hgnc IDs. We +can also extract other information, such as hgnc gene name and protein function. + +```{r} +library(MSstatsBioNet) +annotated_df = annotateProteinInfoFromIndra(input, "Uniprot") +head(annotated_df) +``` + +## Subnetwork Query + +The package provides a function `getSubnetworkFromIndra` that retrieves a +subnetwork of proteins from the INDRA database based on differential abundance +analysis results. + +```{r} +subnetwork <- getSubnetworkFromIndra(annotated_df) +head(subnetwork$nodes) +head(subnetwork$edges) +``` + + +## Visualize Networks + +The function `visualizeNetworks` then takes the output of +`getSubnetworkFromIndra` and visualizes the subnetwork. The function requires +Cytoscape desktop to be open for the visualization to work. + +```{r} +visualizeNetworks(subnetwork$nodes, subnetwork$edges) +``` + +## getPathwaysFromIndra + +Here, we will get pathways from INDRA and rank them based on relevance. We will see here that GAB1 is rated as the most relevant edge to track. + +```{r} +print("hello world") +``` + +# Session info + +```{r} +sessionInfo() +``` From 64b27edabf1007b4ac57c59c595a41d622e96bb9 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Sun, 8 Jun 2025 19:03:04 -0400 Subject: [PATCH 03/23] Code is working with PTM analysis, but analysis is protein specific --- R/getPathwaysFromIndra.R | 2 +- inst/extdata/2_egf_data.csv | 1266 +++++++++++++++++------------------ vignettes/PTM-Analysis.Rmd | 24 +- 3 files changed, 646 insertions(+), 646 deletions(-) diff --git a/R/getPathwaysFromIndra.R b/R/getPathwaysFromIndra.R index 76c654e..f070fb0 100644 --- a/R/getPathwaysFromIndra.R +++ b/R/getPathwaysFromIndra.R @@ -40,7 +40,7 @@ getPathwaysFromIndra <- function(annotated_df, main_target = 'MEN1_HUMAN', targe # Call INDRA if (target_type == "Protein") { main_target_row = annotated_df[annotated_df$Protein == main_target,] - source_id = as.character(main_target_row$HgncId) + source_id = as.character(main_target_row$HgncId[1]) namespace = "@HGNC" id_field = "HGNC" } else if (target_type == "Drug") { diff --git a/inst/extdata/2_egf_data.csv b/inst/extdata/2_egf_data.csv index f457fe9..ce3c902 100644 --- a/inst/extdata/2_egf_data.csv +++ b/inst/extdata/2_egf_data.csv @@ -1,633 +1,633 @@ -"Protein","Label","log2FC","Tvalue","pvalue","adj.pvalue","GlobalProtein" -"Q13480_Y659","This study (HEK293F TR) 1min",1.70376713958474,11.3151143700444,5.96335812410164e-08,9.49193483604991e-05,"Q13480" -"Q13480_T638","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480" -"Q13480_S650","This study (HEK293F TR) 1min",1.06751538239836,7.50672863997618,5.48699890642222e-06,0.001124729874958,"Q13480" -"Q13480_Y265","This study (HEK293F TR) 1min",0.586083652098868,5.60798678181296,9.69062701618218e-05,0.0071061337032964,"Q13480" -"P84103_S150","This study (HEK293F TR) 1min",-1.10504046382547,-5.22069888817077,0.000184969365551,0.0106146248093664,"P84103" -"P84103_S148","This study (HEK293F TR) 1min",-1.10960028782523,-5.08641427759661,0.0002325701098662,0.012320066445345,"P84103" -"Q13480_S651","This study (HEK293F TR) 1min",1.0861403567649,5.08102358287817,0.0002347301004535,0.0123416586748211,"Q13480" -"Q13480_S634","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480" -"Q13480_S637","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480" -"Q13480_S266","This study (HEK293F TR) 1min",0.366472954535347,4.37076222805317,0.0008205492144159,0.0260878607518859,"Q13480" -"P84103_S152","This study (HEK293F TR) 1min",-0.939674889678251,-3.92826734122249,0.0018447735121165,0.042278987184565,"P84103" -"Q13480_S389","This study (HEK293F TR) 1min",-0.444828839203883,-3.76541404142624,0.0024975699639907,0.0505279191198013,"Q13480" -"P00533_Y1110","This study (HEK293F TR) 1min",0.4729517886929,3.75948401069197,0.0025253801476862,0.0508611561744001,"P00533" -"P21333_S2158","This study (HEK293F TR) 1min",0.532989570430392,3.71177765595511,0.0027609471504149,0.0535930036360831,"P21333" -"Q99808_S269","This study (HEK293F TR) 1min",0.446638577272779,3.56969435793941,0.0036043463347816,0.0621972219601596,"Q99808" -"P00533_S1064","This study (HEK293F TR) 1min",0.403387983895019,3.4988557092615,0.004118602371085,0.0668151288042883,"P00533" -"Q13480_S500","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480" -"Q13480_T503","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480" -"Q13480_S419","This study (HEK293F TR) 1min",0.332355122205279,3.21384635543824,0.0070593860768096,0.0889962409780329,"Q13480" -"Q99808_S273","This study (HEK293F TR) 1min",0.348067131600315,2.85760689456946,0.0138639473793892,0.125844141931789,"Q99808" -"Q2TAK8_S235","This study (HEK293F TR) 1min",-0.395245276338771,-2.71933672863498,0.0179984120064434,0.143797021787113,"Q2TAK8" -"P84103_S158","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103" -"P84103_S160","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103" -"P21333_S2152","This study (HEK293F TR) 1min",0.235388239881175,2.19158101317147,0.0479216138099419,0.233355984429484,"P21333" -"P21333_S1084","This study (HEK293F TR) 1min",0.224443985987218,2.0704753520104,0.059626425674296,0.261572734421199,"P21333" -"Q13480_S648","This study (HEK293F TR) 1min",0.452818744361604,2.05689686498815,0.0610934625343971,0.26455777067529,"Q13480" -"P00533_T1041","This study (HEK293F TR) 1min",0.271657661801562,2.00737595652264,0.0667322021046199,0.276099869901749,"P00533" -"Q99808_S266","This study (HEK293F TR) 1min",0.421718743267295,1.97693638440734,0.0704329417495169,0.282109132661713,"Q99808" -"Q13480_S646","This study (HEK293F TR) 1min",-0.443829611103984,-1.92563949426819,0.0770987976152556,0.294165738271523,"Q13480" -"O95671_S223","This study (HEK293F TR) 1min",0.386873469280648,1.91311856681102,0.0788112010283812,0.297352889764751,"O95671" -"Q9ULI4_S1059","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4" -"Q9BRP8_T68","This study (HEK293F TR) 1min",-0.217853231282572,-1.69865188465098,0.114011221758164,0.359719656961002,"Q9BRP8" -"Q13480_S253","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480" -"Q13480_S256","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480" -"P21333_S977","This study (HEK293F TR) 1min",-0.292568293874517,-1.68808958236406,0.116060371830274,0.36242335903682,"P21333" -"Q9BRP8_S55","This study (HEK293F TR) 1min",0.271474908656177,1.64304570139027,0.125167558329347,0.375524351863621,"Q9BRP8" -"Q13480_S418","This study (HEK293F TR) 1min",0.181323359909273,1.59674837782528,0.13517349095986,0.389512427331363,"Q13480" -"Q13480_S692","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480" -"Q13480_T684","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480" -"Q13480_T369","This study (HEK293F TR) 1min",-0.251957076418126,-1.39200273990806,0.188089661184504,0.45798216891286,"Q13480" -"P00533_S695","This study (HEK293F TR) 1min",-0.168567207702282,-1.3339621543218,0.205910161052075,0.478556124383805,"P00533" -"O95671_T234","This study (HEK293F TR) 1min",-0.156675662315562,-1.29897946821877,0.217301232302363,0.491577787708395,"O95671" -"O95671_S228","This study (HEK293F TR) 1min",0.162546456010681,1.28081940357915,0.223412290527193,0.498207287543873,"O95671" -"P26583_T179","This study (HEK293F TR) 1min",0.333007351272826,1.24722589564544,0.235079770638176,0.51066542362367,"P26583" -"P26583_S181","This study (HEK293F TR) 1min",0.330986639809748,1.22712453257631,0.242289787055476,0.518593228471161,"P26583" -"Q9BRP8_S64","This study (HEK293F TR) 1min",0.253341533263867,1.05817473499178,0.309911354836916,0.584520502733944,"Q9BRP8" -"Q13480_T387","This study (HEK293F TR) 1min",-0.108576383788634,-1.00300191798484,0.334800326491917,0.607980734215025,"Q13480" -"Q13480_S381","This study (HEK293F TR) 1min",-0.14544164513781,-0.977526453196785,0.346769414529359,0.618941697273364,"Q13480" -"Q9BRP8_T112","This study (HEK293F TR) 1min",0.264359185664373,0.9218428134622,0.373986162515971,0.64218907092272,"Q9BRP8" -"P00533_T693","This study (HEK293F TR) 1min",-0.100727642101091,-0.897999989178961,0.386083280139053,0.652213608541932,"P00533" -"O95671_T249","This study (HEK293F TR) 1min",-0.0965557732785615,-0.886808870104599,0.391852935916219,0.65697319746248,"O95671" -"Q9BRP8_T72","This study (HEK293F TR) 1min",0.164745862786635,0.87455092473495,0.398239695546514,0.661872791180291,"Q9BRP8" -"P00533_S1042","This study (HEK293F TR) 1min",-0.0770847337352726,-0.738315704706098,0.473898731438467,0.722176047660012,"P00533" -"P84103_S5","This study (HEK293F TR) 1min",-0.125625140776993,-0.711473446111361,0.489799939092637,0.733859605703944,"P84103" -"P26583_S168","This study (HEK293F TR) 1min",0.261442060514788,0.687373048408072,0.50434819267248,0.742911602813247,"P26583" -"P00533_S991","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533" -"P00533_S995","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533" -"P84103_S138","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103" -"P84103_S140","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103" -"Q9ULI4_S1262","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4" -"Q9ULI4_S879","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4" -"Q9BRP8_S126","This study (HEK293F TR) 1min",0.0971218156828257,0.516730648927641,0.614325294369067,0.814900075274285,"Q9BRP8" -"P21333_S2339","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333" -"P21333_T2336","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333" -"Q9BRP8_S131","This study (HEK293F TR) 1min",0.106411616104776,0.393890119434163,0.70027040804751,0.864225244902764,"Q9BRP8" -"Q13480_S401","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480" -"Q13480_S402","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480" -"Q9BRP8_S117","This study (HEK293F TR) 1min",-0.0682104620799144,-0.321055481667722,0.753450037173131,0.893447041469526,"Q9BRP8" -"P21333_S1459","This study (HEK293F TR) 1min",-0.0301357324557081,-0.309028903741594,0.762367953656862,0.89823761092272,"P21333" -"O95671_S21","This study (HEK293F TR) 1min",0.0361812416067515,0.300822870748626,0.768473367421129,0.901359831579359,"O95671" -"P00533_S1045","This study (HEK293F TR) 1min",0.0291655004487889,0.264608048034519,0.795605590500253,0.914135909932564,"P00533" -"P00533_S1039","This study (HEK293F TR) 1min",0.0318122946808987,0.217614660629752,0.831226107627063,0.930639948749166,"P00533" -"O95671_S239","This study (HEK293F TR) 1min",0.0231111665258367,0.173794281189501,0.864798021392135,0.944482708489422,"O95671" -"Q13480_S274","This study (HEK293F TR) 1min",0.0137576395281051,0.0830030475697277,0.935157887951278,0.973627044957429,"Q13480" -"Q13480_S367","This study (HEK293F TR) 1min",-0.0155050786974335,-0.0749903486078975,0.9414040905418,0.976574672126427,"Q13480" -"Q13480_T638","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480" -"Q13480_Y659","This study (HEK293F TR) 2min",1.53392426207866,10.1871482652472,1.97505081494113e-07,7.73451844140002e-05,"Q13480" -"Q13480_S650","This study (HEK293F TR) 2min",0.896359565618345,6.30316727411138,3.20069618421293e-05,0.0019890674032445,"Q13480" -"P84103_S150","This study (HEK293F TR) 2min",-1.18411375056542,-5.59427599568965,9.91141101890676e-05,0.0042123923678373,"P84103" -"Q13480_Y265","This study (HEK293F TR) 2min",0.580689647874493,5.55637383495289,0.0001054971830743,0.0043863112430809,"Q13480" -"P84103_S148","This study (HEK293F TR) 2min",-1.19493437282168,-5.47758622758076,0.0001201889852968,0.0048168619697193,"P84103" -"Q13480_S651","This study (HEK293F TR) 2min",1.09278736799033,5.11211866242446,0.0002225530163094,0.0073849586306375,"Q13480" -"Q13480_S266","This study (HEK293F TR) 2min",0.4038022568649,4.81597244780447,0.0003716011999828,0.01040040726645,"Q13480" -"Q13480_S419","This study (HEK293F TR) 2min",0.476692890568188,4.6095805560344,0.0005348342755941,0.0131034397520578,"Q13480" -"P21333_S2158","This study (HEK293F TR) 2min",0.649109433673935,4.52044472509101,0.0006269666756207,0.0146340665445381,"P21333" -"Q13480_S418","This study (HEK293F TR) 2min",0.511031965638642,4.50018939952721,0.0006501138216861,0.0149829828600927,"Q13480" -"Q99808_S269","This study (HEK293F TR) 2min",0.491633864941996,3.9293126997034,0.0018412032290874,0.0285065864238666,"Q99808" -"P84103_S152","This study (HEK293F TR) 2min",-0.928196684000575,-3.8802832341715,0.0020165446810385,0.0301796676361804,"P84103" -"P00533_S1064","This study (HEK293F TR) 2min",0.436525530785271,3.78627997512177,0.0024021799478382,0.0337082052956873,"P00533" -"Q99808_S273","This study (HEK293F TR) 2min",0.450972396950133,3.70245195189826,0.0028095580813648,0.0371139948346673,"Q99808" -"Q13480_S500","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480" -"Q13480_T503","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480" -"Q2TAK8_S235","This study (HEK293F TR) 2min",-0.434520604850169,-2.98955588049831,0.0107994170685152,0.08403652994981,"Q2TAK8" -"P21333_S2152","This study (HEK293F TR) 2min",0.32018683815949,2.98109793221604,0.010973878827176,0.0847898952963221,"P21333" -"Q13480_S634","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480" -"Q13480_S637","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480" -"Q13480_S648","This study (HEK293F TR) 2min",0.633940882545705,2.87963126556173,0.013298278653527,0.0944547234203235,"Q13480" -"P00533_Y1110","This study (HEK293F TR) 2min",0.360094363283572,2.86238266451284,0.0137393011954488,0.0961498328009507,"P00533" -"P21333_S977","This study (HEK293F TR) 2min",-0.469231782120286,-2.7074201124853,0.0184068657711229,0.114576518873285,"P21333" -"Q13480_S389","This study (HEK293F TR) 2min",-0.312408532177169,-2.6444946236548,0.020718892461938,0.122596915174104,"Q13480" -"P00533_T1041","This study (HEK293F TR) 2min",0.329817671278109,2.43714113921656,0.0305182449356552,0.153714275915501,"P00533" -"Q13480_S253","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480" -"Q13480_S256","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480" -"P84103_S158","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103" -"P84103_S160","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103" -"Q9ULI4_S1059","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4" -"Q13480_S646","This study (HEK293F TR) 2min",-0.430733838418522,-1.8688209845064,0.0851514044386808,0.274651964257931,"Q13480" -"P84103_S5","This study (HEK293F TR) 2min",-0.326571020989046,-1.84952317876912,0.0880555036238635,0.279807922032812,"P84103" -"P21333_S1084","This study (HEK293F TR) 2min",0.197434612274215,1.8213163366773,0.0924615508268959,0.286984111506247,"P21333" -"Q13480_S274","This study (HEK293F TR) 2min",0.281472158278026,1.69818717050822,0.114100702850856,0.323691277906633,"Q13480" -"Q9BRP8_S64","This study (HEK293F TR) 2min",0.399533854596605,1.66880110521659,0.119886338958943,0.332745619487633,"Q9BRP8" -"O95671_T234","This study (HEK293F TR) 2min",-0.189141689965618,-1.56815148069831,0.141694719619396,0.366645882964786,"O95671" -"Q9BRP8_T72","This study (HEK293F TR) 2min",0.291158427826943,1.54561011726411,0.147024551772785,0.374806075800659,"Q9BRP8" -"P84103_S138","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103" -"P84103_S140","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103" -"Q13480_S367","This study (HEK293F TR) 2min",0.306902684123715,1.48433553419799,0.162388208749263,0.395807221118104,"Q13480" -"Q13480_T369","This study (HEK293F TR) 2min",-0.260020218164765,-1.43654967450165,0.175294781386693,0.412690032824256,"Q13480" -"Q9ULI4_S1262","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4" -"P00533_S1045","This study (HEK293F TR) 2min",0.150452844596394,1.36500430019351,0.196214317150538,0.438566907553858,"P00533" -"Q9BRP8_T68","This study (HEK293F TR) 2min",-0.16579615527638,-1.29275085785997,0.219381860614282,0.466298693591792,"Q9BRP8" -"P00533_S1042","This study (HEK293F TR) 2min",0.131773109895089,1.26211964132385,0.229848400038462,0.47823367861317,"P00533" -"Q9BRP8_S117","This study (HEK293F TR) 2min",-0.198247036676712,-0.933116356474329,0.368358889085155,0.613409357231576,"Q9BRP8" -"P26583_T179","This study (HEK293F TR) 2min",0.247496358028005,0.926958115580953,0.371425453330428,0.616125033041865,"P26583" -"P26583_S168","This study (HEK293F TR) 2min",-0.343340232494674,-0.902696458964186,0.38367941486351,0.627236966756459,"P26583" -"O95671_T249","This study (HEK293F TR) 2min",0.0821012646494896,0.754052577756511,0.464726100044519,0.693298187888527,"O95671" -"P00533_S695","This study (HEK293F TR) 2min",-0.0908929544419194,-0.719284390912856,0.485139735829573,0.708988059738136,"P00533" -"P26583_S181","This study (HEK293F TR) 2min",0.174684425506943,0.647638056091278,0.528884652253245,0.741153486016639,"P26583" -"O95671_S239","This study (HEK293F TR) 2min",0.080256664347921,0.603524243374771,0.556907186371671,0.761985173089798,"O95671" -"P21333_S2339","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333" -"P21333_T2336","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333" -"P00533_T693","This study (HEK293F TR) 2min",0.0637686410983846,0.568505703318612,0.579718799597352,0.777224259072107,"P00533" -"Q9ULI4_S879","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4" -"Q13480_S401","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480" -"Q13480_S402","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480" -"P00533_S1039","This study (HEK293F TR) 2min",0.07711090241499,0.527483572883148,0.607054163964584,0.794490308538127,"P00533" -"P21333_S1459","This study (HEK293F TR) 2min",0.0513012072480769,0.526071694450907,0.60800641233835,0.79514604834379,"P21333" -"Q99808_S266","This study (HEK293F TR) 2min",0.107278422718196,0.502900619238089,0.623740056153892,0.805258346689767,"Q99808" -"Q9BRP8_S131","This study (HEK293F TR) 2min",-0.100860850372776,-0.373343567683875,0.715120630373446,0.860345181267785,"Q9BRP8" -"O95671_S223","This study (HEK293F TR) 2min",-0.053394822381362,-0.264041435199212,0.796032418590052,0.90453729804921,"O95671" -"Q9BRP8_T112","This study (HEK293F TR) 2min",0.0741987887600501,0.258737444716187,0.800031208816391,0.90621850559117,"Q9BRP8" -"O95671_S228","This study (HEK293F TR) 2min",0.024946759661848,0.196573303506667,0.847307701707302,0.93027900165439,"O95671" -"Q13480_S692","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480" -"Q13480_T684","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480" -"O95671_S21","This study (HEK293F TR) 2min",-0.0211222359114024,-0.17561729120739,0.863395391360773,0.937534798880188,"O95671" -"Q9BRP8_S55","This study (HEK293F TR) 2min",0.0261460947034706,0.15824382711217,0.876781556764774,0.944422108219874,"Q9BRP8" -"Q13480_T387","This study (HEK293F TR) 2min",-0.0148992409276118,-0.137635521698756,0.892711300521128,0.952203158960805,"Q13480" -"P00533_S991","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533" -"P00533_S995","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533" -"Q13480_S381","This study (HEK293F TR) 2min",0.0123554922163631,0.0830423808278424,0.935127236886922,0.97237231049062,"Q13480" -"Q9BRP8_S126","This study (HEK293F TR) 2min",0.0025408843401635,0.0135186189087582,0.989426489479751,0.995844391033133,"Q9BRP8" -"Q13480_T638","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480" -"Q13480_Y659","This study (HEK293F TR) 3min",1.21276599288191,8.0542614038816,2.61257827330921e-06,0.0002647072889936,"Q13480" -"P84103_S150","This study (HEK293F TR) 3min",-1.47891469175969,-6.98704575960999,1.14811459927821e-05,0.0007134939379368,"P84103" -"P84103_S148","This study (HEK293F TR) 3min",-1.49208154426403,-6.83971061773762,1.42438692967131e-05,0.0008172502822182,"P84103" -"Q13480_S418","This study (HEK293F TR) 3min",0.67591857726473,5.95219442398075,5.55243504261198e-05,0.0021139953881759,"Q13480" -"Q13480_Y265","This study (HEK293F TR) 3min",0.573283167282483,5.48550435222461,0.0001186197335806,0.0036444916027821,"Q13480" -"P84103_S152","This study (HEK293F TR) 3min",-1.27252645747826,-5.31973789941863,0.0001564738994305,0.0044018766360321,"P84103" -"Q13480_S650","This study (HEK293F TR) 3min",0.70013849495635,4.9233479710903,0.0003081487892753,0.0071755477627244,"Q13480" -"Q13480_S266","This study (HEK293F TR) 3min",0.400521317427366,4.77684212184553,0.0003979930144865,0.0086283696457855,"Q13480" -"Q13480_S419","This study (HEK293F TR) 3min",0.464803885054938,4.49461486275724,0.0006566386574765,0.0121944001790981,"Q13480" -"P21333_S2158","This study (HEK293F TR) 3min",0.602485166897726,4.19574998199223,0.0011276606624867,0.0175804613172465,"P21333" -"Q99808_S269","This study (HEK293F TR) 3min",0.511424131815868,4.0874835510283,0.0013750662085058,0.0200065180847649,"Q99808" -"Q13480_S651","This study (HEK293F TR) 3min",0.861180623684671,4.0286497327957,0.0015323453317053,0.0215127806369725,"Q13480" -"P00533_T1041","This study (HEK293F TR) 3min",0.504292168698397,3.7263958166852,0.0026864706403833,0.0314165887194938,"P00533" -"P00533_S1042","This study (HEK293F TR) 3min",0.297204100764812,2.84661364792789,0.0141551315696634,0.0928798746066363,"P00533" -"Q13480_S500","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480" -"Q13480_T503","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480" -"Q13480_S648","This study (HEK293F TR) 3min",0.61957213253876,2.81436224299785,0.0150446979398548,0.0967519439370365,"Q13480" -"P21333_S2152","This study (HEK293F TR) 3min",0.297910905400229,2.77369797327789,0.0162452281908146,0.101415523104677,"P21333" -"Q13480_S634","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480" -"Q13480_S637","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480" -"Q99808_S273","This study (HEK293F TR) 3min",0.316701505231324,2.6000972878668,0.0225184300074042,0.12369218433211,"Q99808" -"Q2TAK8_S235","This study (HEK293F TR) 3min",-0.366101986456474,-2.51882726447567,0.026214385895867,0.13562927998949,"Q2TAK8" -"P00533_S1064","This study (HEK293F TR) 3min",0.282900441162347,2.4537860898977,0.0295893548436515,0.145978585967694,"P00533" -"P00533_T693","This study (HEK293F TR) 3min",0.265319395778178,2.36535681336266,0.0348552902087417,0.160758176136729,"P00533" -"P26583_T179","This study (HEK293F TR) 3min",0.612900233528975,2.29552002315468,0.0396366690395622,0.173481258839896,"P26583" -"P00533_S1045","This study (HEK293F TR) 3min",0.252779247922989,2.29337478689872,0.0397930074469168,0.173823155670434,"P00533" -"P21333_S1084","This study (HEK293F TR) 3min",0.241630363044717,2.22901811684053,0.0447648057798837,0.186446341824665,"P21333" -"P00533_Y1110","This study (HEK293F TR) 3min",0.278752634772754,2.21579894276898,0.0458563654579875,0.189188180668351,"P00533" -"O95671_T234","This study (HEK293F TR) 3min",-0.257734607186693,-2.13684728078976,0.0529161454021445,0.205325352168615,"O95671" -"P26583_S181","This study (HEK293F TR) 3min",0.564021512901842,2.09109538614759,0.0574611678902723,0.21479593994013,"P26583" -"P21333_S977","This study (HEK293F TR) 3min",-0.359691674572552,-2.07538472699108,0.0591041226527984,0.218914181358432,"P21333" -"P84103_S5","This study (HEK293F TR) 3min",-0.35624792552462,-2.01759725541692,0.0655303378255179,0.232673487754517,"P84103" -"Q9BRP8_S64","This study (HEK293F TR) 3min",0.467693969457141,1.95349706702888,0.0734103020374468,0.248808622047895,"Q9BRP8" -"Q13480_S646","This study (HEK293F TR) 3min",-0.42985113345325,-1.86499120050734,0.0857207449212001,0.272445650025557,"Q13480" -"Q9BRP8_T68","This study (HEK293F TR) 3min",-0.237984925053956,-1.85562334366792,0.0871279499819063,0.275320723179913,"Q9BRP8" -"Q9BRP8_T72","This study (HEK293F TR) 3min",0.335475150315677,1.78086476935779,0.0991269222995888,0.2959298865747,"Q9BRP8" -"Q9ULI4_S1059","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4" -"Q9ULI4_S879","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4" -"Q13480_S253","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480" -"Q13480_S256","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480" -"Q13480_S274","This study (HEK293F TR) 3min",0.261948487877737,1.58039631404186,0.138869871666238,0.359370971056622,"Q13480" -"P84103_S158","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103" -"P84103_S160","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103" -"Q9ULI4_S1262","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4" -"P21333_S1459","This study (HEK293F TR) 3min",0.128046899040161,1.31306557410044,0.212654616503816,0.458170323209666,"P21333" -"P84103_S138","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103" -"P84103_S140","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103" -"Q9BRP8_S126","This study (HEK293F TR) 3min",0.233272080040749,1.241109759416,0.237255274834602,0.48663121029903,"Q9BRP8" -"P00533_S1039","This study (HEK293F TR) 3min",0.16484935201419,1.1276657705281,0.280551339632174,0.532780847148919,"P00533" -"Q13480_S389","This study (HEK293F TR) 3min",-0.129457523956244,-1.09583987258005,0.293725108851004,0.546812980420113,"Q13480" -"Q99808_S266","This study (HEK293F TR) 3min",0.227100806241164,1.06460491489665,0.307102055594803,0.560031662695483,"Q99808" -"Q13480_S367","This study (HEK293F TR) 3min",0.210024359757735,1.01578329666847,0.328909048077413,0.581941195531104,"Q13480" -"Q13480_T387","This study (HEK293F TR) 3min",0.0993114434855506,0.9174146791236,0.376212760642871,0.624149897397659,"Q13480" -"O95671_S223","This study (HEK293F TR) 3min",0.181459919886247,0.897333028578877,0.386425496565956,0.632902171189564,"O95671" -"P21333_S2339","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333" -"P21333_T2336","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333" -"Q9BRP8_T112","This study (HEK293F TR) 3min",0.244564227534452,0.85281612218611,0.409736346758745,0.653017716258668,"Q9BRP8" -"Q13480_T369","This study (HEK293F TR) 3min",-0.152031430268384,-0.839937383360218,0.416652207970843,0.658684797446664,"Q13480" -"Q13480_S692","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480" -"Q13480_T684","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480" -"O95671_S228","This study (HEK293F TR) 3min",0.0931621164762965,0.734090729443533,0.476380289409323,0.703636471156852,"O95671" -"P00533_S695","This study (HEK293F TR) 3min",-0.0904038576144969,-0.715413907047852,0.487445586040152,0.711230850184818,"P00533" -"Q9BRP8_S55","This study (HEK293F TR) 3min",0.113338480966059,0.685957700014308,0.505210471170108,0.724000517658459,"Q9BRP8" -"O95671_T249","This study (HEK293F TR) 3min",-0.0727469521861507,-0.668138634089087,0.516140753807215,0.732110650964711,"O95671" -"Q9BRP8_S117","This study (HEK293F TR) 3min",-0.127808572587547,-0.60157403398447,0.558164581145576,0.761404260960582,"Q9BRP8" -"P00533_S991","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533" -"P00533_S995","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533" -"Q9BRP8_S131","This study (HEK293F TR) 3min",0.106617881560162,0.394653625598538,0.699721002291539,0.851916261416113,"Q9BRP8" -"O95671_S239","This study (HEK293F TR) 3min",0.0381413204037883,0.286819938568845,0.778928903207655,0.894995549342756,"O95671" -"P26583_S168","This study (HEK293F TR) 3min",0.076170004265748,0.2002631402396,0.844482219885772,0.929597868544003,"P26583" -"O95671_S21","This study (HEK293F TR) 3min",-0.015083524334118,-0.125409435654896,0.902185294547149,0.956937827880533,"O95671" -"Q13480_S381","This study (HEK293F TR) 3min",0.0149134770863756,0.100234828527022,0.921740798333989,0.965375681864678,"Q13480" -"Q13480_S401","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480" -"Q13480_S402","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480" -"Q13480_Y659","This study (HEK293F TR) 5min",0.96149464558723,6.38550986706809,2.81957799208171e-05,0.0010275216902753,"Q13480" -"Q13480_S418","This study (HEK293F TR) 5min",0.687774707113656,6.05660047576046,4.70479376330071e-05,0.0014777125312701,"Q13480" -"Q13480_T638","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480" -"P84103_S150","This study (HEK293F TR) 5min",-0.987065216025538,-4.66333174625761,0.0004861886098434,0.0078168799529186,"P84103" -"P84103_S148","This study (HEK293F TR) 5min",-0.990302361639888,-4.53955187886192,0.0006059155595428,0.0091351796830444,"P84103" -"Q13480_S389","This study (HEK293F TR) 5min",-0.524029613808988,-4.43583754482056,0.0007297187629433,0.0104215666917261,"Q13480" -"Q13480_S266","This study (HEK293F TR) 5min",0.35869793972493,4.27803303580211,0.0009706780466285,0.0128419139449146,"Q13480" -"P00533_T1041","This study (HEK293F TR) 5min",0.51668972589909,3.81800581612068,0.0022642300532271,0.0236302672411981,"P00533" -"Q9BRP8_T68","This study (HEK293F TR) 5min",-0.449612949618791,-3.50573585591129,0.0040655454290081,0.0357014073862877,"Q9BRP8" -"Q13480_T387","This study (HEK293F TR) 5min",-0.36363813432121,-3.35919961090824,0.005361202267745,0.0432958761861446,"Q13480" -"P84103_S152","This study (HEK293F TR) 5min",-0.774282656761766,-3.23685277412668,0.0067582903348887,0.0505800576360409,"P84103" -"P21333_S977","This study (HEK293F TR) 5min",-0.554994186821087,-3.20226054791542,0.0072160818400963,0.052954063985109,"P21333" -"P26583_T179","This study (HEK293F TR) 5min",0.847039146571802,3.17244996001376,0.0076355062981983,0.0549824951255408,"P26583" -"Q13480_S500","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480" -"Q13480_T503","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480" -"Q13480_S634","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480" -"Q13480_S637","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480" -"Q99808_S269","This study (HEK293F TR) 5min",0.384654730496244,3.07429740975676,0.0091969808085241,0.061910862760574,"Q99808" -"Q13480_S651","This study (HEK293F TR) 5min",0.645065267756046,3.01765035941256,0.0102394897843786,0.0662793053168823,"Q13480" -"P26583_S181","This study (HEK293F TR) 5min",0.808191366960536,2.9963488979003,0.0106612983882562,0.0679751505998564,"P26583" -"Q13480_S650","This study (HEK293F TR) 5min",0.394430618061241,2.77362150082717,0.0162475724584144,0.0898670516551446,"Q13480" -"Q13480_S253","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480" -"Q13480_S256","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480" -"Q2TAK8_S235","This study (HEK293F TR) 5min",-0.394616259132977,-2.71500901191563,0.0181457103876402,0.0961929294861768,"Q2TAK8" -"P00533_S1042","This study (HEK293F TR) 5min",0.258191118952979,2.47294825708657,0.0285537166113875,0.129105723814067,"P00533" -"P84103_S5","This study (HEK293F TR) 5min",-0.435111633104363,-2.46423901404772,0.0290200076088459,0.130207319686338,"P84103" -"P00533_S991","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533" -"P00533_S995","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533" -"P84103_S158","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103" -"P84103_S160","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103" -"Q13480_Y265","This study (HEK293F TR) 5min",0.229185052774778,2.1929749139859,0.0478004054038426,0.178615327818387,"Q13480" -"P21333_S2158","This study (HEK293F TR) 5min",0.310716541283021,2.16385231391802,0.0503937596017678,0.184191057780002,"P21333" -"P00533_S1045","This study (HEK293F TR) 5min",0.219845820743592,1.99458170099474,0.0682652830941085,0.221518733638866,"P00533" -"P21333_S1084","This study (HEK293F TR) 5min",-0.215233156425089,-1.98550628725211,0.0693723677053264,0.22360397557112,"P21333" -"O95671_T234","This study (HEK293F TR) 5min",-0.235750583933722,-1.9545803325452,0.0732701934695059,0.231368946394844,"O95671" -"Q13480_S419","This study (HEK293F TR) 5min",0.199154802880692,1.92581035959122,0.0770756664195951,0.238815987952407,"Q13480" -"Q9ULI4_S1262","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4" -"P21333_S1459","This study (HEK293F TR) 5min",-0.178003878770223,-1.82535279668287,0.0918190814556798,0.265336980162086,"P21333" -"Q13480_S274","This study (HEK293F TR) 5min",0.239761611121315,1.44653771256631,0.172528113502483,0.386957032025137,"Q13480" -"Q13480_S648","This study (HEK293F TR) 5min",0.315398720212013,1.43267620190939,0.176377680597204,0.392416083222465,"Q13480" -"O95671_S21","This study (HEK293F TR) 5min",-0.163361915657431,-1.35824527453179,0.198292917102341,0.418851344545411,"O95671" -"Q9BRP8_S126","This study (HEK293F TR) 5min",0.245227525123361,1.30471796991252,0.215398448877986,0.438918259879681,"Q9BRP8" -"P26583_S168","This study (HEK293F TR) 5min",0.47404113706089,1.24633006950288,0.235397421024411,0.46361035548845,"P26583" -"Q9ULI4_S879","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4" -"P00533_T693","This study (HEK293F TR) 5min",0.132774787634869,1.18370444668692,0.25845840766427,0.488028626499306,"P00533" -"P00533_S1039","This study (HEK293F TR) 5min",0.165469813249521,1.1319100874664,0.278829016682789,0.508639156695712,"P00533" -"Q13480_S692","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480" -"Q13480_T684","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480" -"P00533_Y1110","This study (HEK293F TR) 5min",0.137000797900502,1.08901651600141,0.296609311793398,0.528055753781991,"P00533" -"Q9ULI4_S1059","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4" -"Q9BRP8_T112","This study (HEK293F TR) 5min",0.279419234387438,0.974358475631675,0.348278971297888,0.578807886905782,"Q9BRP8" -"Q13480_S401","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480" -"Q13480_S402","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480" -"O95671_S228","This study (HEK293F TR) 5min",0.117677154423358,0.927262189792152,0.371273619860154,0.599105890498014,"O95671" -"P00533_S1064","This study (HEK293F TR) 5min",-0.100032805064227,-0.867651901112409,0.401865112469493,0.627669861549287,"P00533" -"Q13480_S367","This study (HEK293F TR) 5min",0.169059921108289,0.817658695381709,0.428797266488978,0.650364201811877,"Q13480" -"Q9BRP8_T72","This study (HEK293F TR) 5min",-0.15158073751136,-0.804664056020953,0.435986978162188,0.656425674076753,"Q9BRP8" -"Q9BRP8_S131","This study (HEK293F TR) 5min",0.210047616710483,0.777506101885433,0.451263200521798,0.668654375007106,"Q9BRP8" -"O95671_S223","This study (HEK293F TR) 5min",0.13702643262045,0.677606073317719,0.510316286685563,0.713592442937221,"O95671" -"O95671_S239","This study (HEK293F TR) 5min",0.0899607512350328,0.676498266700709,0.51099582176578,0.714138859632162,"O95671" -"Q13480_S646","This study (HEK293F TR) 5min",-0.114557429494987,-0.497029276727792,0.627758068696753,0.797448499966613,"Q13480" -"Q9BRP8_S117","This study (HEK293F TR) 5min",0.0989010053581047,0.465510846055656,0.649537420188096,0.81151883638885,"Q9BRP8" -"Q9BRP8_S55","This study (HEK293F TR) 5min",0.0615826623552617,0.372716319028694,0.715575929974441,0.851919681337858,"Q9BRP8" -"P21333_S2152","This study (HEK293F TR) 5min",0.0397315284351869,0.369920193917902,0.717606927778133,0.853209688972964,"P21333" -"Q13480_S381","This study (HEK293F TR) 5min",0.0516821846361104,0.347360637958466,0.734074214966415,0.863572880631665,"Q13480" -"Q9BRP8_S64","This study (HEK293F TR) 5min",-0.0748100203406814,-0.312471754744925,0.759811331094997,0.878046889710519,"Q9BRP8" -"P84103_S138","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103" -"P84103_S140","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103" -"Q99808_S273","This study (HEK293F TR) 5min",-0.0356433470307919,-0.292629395233108,0.774585578182977,0.886125757773408,"Q99808" -"Q13480_T369","This study (HEK293F TR) 5min",-0.0517394563116866,-0.285848153070726,0.77965620173143,0.889364863636702,"Q13480" -"P21333_S2339","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333" -"P21333_T2336","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333" -"Q99808_S266","This study (HEK293F TR) 5min",0.0406590944931011,0.190602017443461,0.851884854642904,0.928673627082712,"Q99808" -"O95671_T249","This study (HEK293F TR) 5min",0.0191085886093507,0.175501322174325,0.863484603973436,0.934855783819616,"O95671" -"P00533_S695","This study (HEK293F TR) 5min",-0.0168234424441156,-0.133132866301596,0.896198489905016,0.95215300248871,"P00533" -"Q13480_S418","This study (HEK293F TR) 7min",1.1037995737909,9.72014957023043,3.34652817160609e-07,4.32857234845081e-05,"Q13480" -"P84103_S150","This study (HEK293F TR) 7min",-1.36644568044178,-6.45569250915216,2.53263208550614e-05,0.0007680864474193,"P84103" -"P84103_S148","This study (HEK293F TR) 7min",-1.37579563187301,-6.30665530803837,3.18349312216953e-05,0.0009070452183221,"P84103" -"Q13480_Y659","This study (HEK293F TR) 7min",0.792176512639632,5.26102871309338,0.0001727592939515,0.0030250736236118,"Q13480" -"P00533_T1041","This study (HEK293F TR) 7min",0.697451166751218,5.15371697488788,0.0002072876990016,0.0034426781998778,"P00533" -"Q13480_S253","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480" -"Q13480_S256","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480" -"P84103_S152","This study (HEK293F TR) 7min",-1.21143888805105,-5.06436414561133,0.0002415390204995,0.0038620414415131,"P84103" -"Q13480_T638","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480" -"Q13480_S419","This study (HEK293F TR) 7min",0.483808265698794,4.67838564102704,0.0004734069385915,0.0063385423968833,"Q13480" -"Q13480_S266","This study (HEK293F TR) 7min",0.375216829491048,4.47504659040579,0.0006800859268684,0.0082694627623141,"Q13480" -"P00533_S1042","This study (HEK293F TR) 7min",0.442948339454276,4.24254842101028,0.0010354069477496,0.011206423562801,"P00533" -"P00533_S1045","This study (HEK293F TR) 7min",0.45594435889104,4.13661843486446,0.0012564974840463,0.0127912843728693,"P00533" -"Q13480_S634","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480" -"Q13480_S637","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480" -"P21333_S977","This study (HEK293F TR) 7min",-0.600796400495767,-3.46653470670927,0.0043774091151049,0.0307596835611823,"P21333" -"Q13480_S401","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480" -"Q13480_S402","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480" -"Q9BRP8_T68","This study (HEK293F TR) 7min",-0.401600997432656,-3.13137559241367,0.008253757372613,0.0478056726253567,"Q9BRP8" -"Q13480_S389","This study (HEK293F TR) 7min",-0.355636325653229,-3.01041186235259,0.0103809274155062,0.0557446080659887,"Q13480" -"Q99808_S269","This study (HEK293F TR) 7min",0.374719370584309,2.99489047979945,0.0106908026195154,0.0568321777262176,"Q99808" -"P00533_S1039","This study (HEK293F TR) 7min",0.397147945491421,2.71672371467789,0.0180872077875341,0.0819442912050481,"P00533" -"Q13480_S500","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480" -"Q13480_T503","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480" -"P21333_S2158","This study (HEK293F TR) 7min",0.361187229992353,2.51533381566802,0.0263857888347521,0.105472616532176,"P21333" -"Q13480_S651","This study (HEK293F TR) 7min",0.505287784467303,2.3637637005457,0.0349579424770295,0.127069626686521,"Q13480" -"P26583_T179","This study (HEK293F TR) 7min",0.583606449226995,2.18580482851037,0.0484269814361419,0.15820527972746,"P26583" -"P26583_S181","This study (HEK293F TR) 7min",0.576724837670714,2.1381926390099,0.0527877313539815,0.166799610776491,"P26583" -"Q13480_S650","This study (HEK293F TR) 7min",0.302522365950496,2.12732607525697,0.0538333383565838,0.168784997987855,"Q13480" -"P84103_S158","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103" -"P84103_S160","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103" -"Q13480_Y265","This study (HEK293F TR) 7min",0.220715253501599,2.11193098416719,0.0553479061411364,0.172044332412882,"Q13480" -"P00533_T693","This study (HEK293F TR) 7min",0.230349261636213,2.05359353343247,0.0614553946063972,0.184228039858047,"P00533" -"P84103_S5","This study (HEK293F TR) 7min",-0.345894897394597,-1.95896325464448,0.0727058111844041,0.206215027951489,"P84103" -"P00533_S991","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533" -"P00533_S995","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533" -"Q9ULI4_S1059","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4" -"O95671_T234","This study (HEK293F TR) 7min",-0.216271417990969,-1.79308086132101,0.0970699753118389,0.248816820353874,"O95671" -"Q2TAK8_S235","This study (HEK293F TR) 7min",-0.24611393744777,-1.6932945428981,0.115046552384683,0.277611651619465,"Q2TAK8" -"Q13480_T387","This study (HEK293F TR) 7min",-0.176926346528642,-1.63440205612056,0.126985038563461,0.29511123705805,"Q13480" -"Q13480_S646","This study (HEK293F TR) 7min",-0.373749564385765,-1.62158383339173,0.129722708424391,0.29928964332467,"Q13480" -"Q13480_S692","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480" -"Q13480_T684","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480" -"P21333_S2152","This study (HEK293F TR) 7min",0.153280640767058,1.42711862819238,0.177941170624865,0.364760549297608,"P21333" -"Q9ULI4_S1262","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4" -"Q13480_S274","This study (HEK293F TR) 7min",0.209465361581399,1.26375337397328,0.229280255517313,0.427468285649164,"Q13480" -"P00533_Y1110","This study (HEK293F TR) 7min",0.152405669772214,1.21146952468655,0.248025052922553,0.448616987841922,"P00533" -"Q9BRP8_S126","This study (HEK293F TR) 7min",0.221764565592352,1.17988473631837,0.25992012882842,0.462220741585782,"Q9BRP8" -"P26583_S168","This study (HEK293F TR) 7min",0.442062866036459,1.16225407349213,0.266750341608761,0.469906075716093,"P26583" -"Q13480_S648","This study (HEK293F TR) 7min",0.231929312793405,1.05352236921237,0.311955791963061,0.517674603234076,"Q13480" -"O95671_T249","This study (HEK293F TR) 7min",-0.11309753638146,-1.03873538623842,0.318520007128247,0.524373265354362,"O95671" -"Q9BRP8_T112","This study (HEK293F TR) 7min",0.291082861844382,1.01503052991669,0.329253915581703,0.535177255873372,"Q9BRP8" -"P21333_S1084","This study (HEK293F TR) 7min",-0.108606213194125,-1.00188243629941,0.335319941974884,0.541342894515348,"P21333" -"Q99808_S273","This study (HEK293F TR) 7min",-0.119598613714306,-0.981896284086366,0.344694853164643,0.550560650271822,"Q99808" -"P00533_S1064","This study (HEK293F TR) 7min",-0.110747413479764,-0.960586917334802,0.354895645676274,0.560282061897437,"P00533" -"Q9BRP8_S131","This study (HEK293F TR) 7min",0.235992512154962,0.873542966462983,0.398767990853891,0.601557072923401,"Q9BRP8" -"P00533_S695","This study (HEK293F TR) 7min",-0.0890833414201246,-0.704963958617947,0.493704257750478,0.682740091089987,"P00533" -"O95671_S223","This study (HEK293F TR) 7min",0.139082224187964,0.687772118109102,0.504105223441676,0.690868238103636,"O95671" -"Q9ULI4_S879","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4" -"Q9BRP8_S55","This study (HEK293F TR) 7min",0.0950606833069915,0.575335112375293,0.575231542512794,0.744759881746609,"Q9BRP8" -"Q9BRP8_T72","This study (HEK293F TR) 7min",-0.0651972218391101,-0.346098467573591,0.734999697278246,0.852100231727844,"Q9BRP8" -"O95671_S239","This study (HEK293F TR) 7min",0.0412077495785574,0.30987926158708,0.761736215153427,0.868171944370563,"O95671" -"Q9BRP8_S117","This study (HEK293F TR) 7min",0.057739839616218,0.271771975355971,0.790214991764914,0.8855885516059,"Q9BRP8" -"O95671_S228","This study (HEK293F TR) 7min",0.0338566919163412,0.266781011482661,0.793969340478379,0.887538324170831,"O95671" -"P21333_S1459","This study (HEK293F TR) 7min",-0.0239298948281394,-0.245390722666535,0.810119427622841,0.896733089700785,"P21333" -"Q99808_S266","This study (HEK293F TR) 7min",-0.0506435705627694,-0.237407321538899,0.816170853856404,0.900644491598715,"Q99808" -"Q13480_S381","This study (HEK293F TR) 7min",0.0326430791622023,0.219397087846569,0.829867354092036,0.909416972496865,"Q13480" -"O95671_S21","This study (HEK293F TR) 7min",0.0259075469099361,0.215403957669805,0.832912125216958,0.911191534998678,"O95671" -"Q13480_T369","This study (HEK293F TR) 7min",0.0283255991048836,0.156492177652125,0.878133467775698,0.93558481852733,"Q13480" -"Q13480_S367","This study (HEK293F TR) 7min",0.0251815521598963,0.121790634656447,0.904992577603532,0.950267622743852,"Q13480" -"P21333_S2339","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333" -"P21333_T2336","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333" -"Q9BRP8_S64","This study (HEK293F TR) 7min",0.0154904149712216,0.0647014547749363,0.949430555085256,0.974015212026464,"Q9BRP8" -"P84103_S138","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103" -"P84103_S140","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103" -"Q13480_S418","This study (HEK293F TR) 9min",1.34281990556529,11.8249822140717,3.58418773652344e-08,1.07838155782486e-05,"Q13480" -"P00533_S1042","This study (HEK293F TR) 9min",0.86346067692395,8.27020536074574,1.96855408160295e-06,0.000110505533616,"P00533" -"Q13480_S401","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480" -"Q13480_S402","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480" -"P00533_T1041","This study (HEK293F TR) 9min",1.02430571177988,7.56896251082995,5.03405987618794e-06,0.0002175092963841,"P00533" -"P00533_S1045","This study (HEK293F TR) 9min",0.786826367251601,7.13859134857336,9.22449929705528e-06,0.0003262827733437,"P00533" -"Q13480_S253","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480" -"Q13480_S256","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480" -"Q13480_S419","This study (HEK293F TR) 9min",0.64730209276652,6.25935733411177,3.42533870901217e-05,0.0008333054567232,"Q13480" -"P84103_S150","This study (HEK293F TR) 9min",-1.19256729892051,-5.63421428930265,9.28257766047161e-05,0.0017109833003386,"P84103" -"P84103_S148","This study (HEK293F TR) 9min",-1.20064152884553,-5.5037478645258,0.0001150855336849,0.0019995301016256,"P84103" -"P00533_S1039","This study (HEK293F TR) 9min",0.76105132314717,5.20603518450171,0.0001896302605604,0.0028711033896398,"P00533" -"Q13480_S266","This study (HEK293F TR) 9min",0.414276614970547,4.94089552385877,0.0002989062372522,0.0039808179392007,"Q13480" -"P84103_S152","This study (HEK293F TR) 9min",-1.10782416697773,-4.63120760462771,0.0005146794136814,0.0058854753903324,"P84103" -"P00533_S991","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533" -"P00533_S995","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533" -"Q9BRP8_T68","This study (HEK293F TR) 9min",-0.493333938082928,-3.84663848570558,0.0021466977465303,0.0164078722359052,"Q9BRP8" -"P84103_S158","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103" -"P84103_S160","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103" -"Q13480_Y659","This study (HEK293F TR) 9min",0.541049789789273,3.59323766089666,0.0034482903376149,0.0230117649619874,"Q13480" -"P21333_S977","This study (HEK293F TR) 9min",-0.574754991480809,-3.31627840010112,0.0058146542047515,0.033288372482313,"P21333" -"Q2TAK8_S235","This study (HEK293F TR) 9min",-0.429348140146745,-2.95396867911318,0.01155260565003,0.0540068515875285,"Q2TAK8" -"O95671_S21","This study (HEK293F TR) 9min",-0.333699201335193,-2.7744860942927,0.0162210876768497,0.0681833052759804,"O95671" -"Q13480_T638","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480" -"P21333_S2158","This study (HEK293F TR) 9min",0.360885642804305,2.51323354082584,0.0264893586038732,0.0953713550960174,"P21333" -"P26583_T179","This study (HEK293F TR) 9min",0.627009335300997,2.34836341242852,0.0359652825163965,0.117471035626303,"P26583" -"P00533_T693","This study (HEK293F TR) 9min",0.252207061284317,2.24845865126947,0.0432040696201188,0.133748566865269,"P00533" -"Q9BRP8_T72","This study (HEK293F TR) 9min",-0.41749554561012,-2.21626879916813,0.0458171403347397,0.13909023711161,"Q9BRP8" -"P26583_S181","This study (HEK293F TR) 9min",0.591827691734299,2.19418608558526,0.0476953210305215,0.143008712308463,"P26583" -"P21333_S1084","This study (HEK293F TR) 9min",-0.236450193628468,-2.18123152523993,0.0488306618067355,0.14524154220171,"P21333" -"Q9ULI4_S1262","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4" -"Q13480_S651","This study (HEK293F TR) 9min",0.404909330680219,1.89418784165381,0.0814661840931408,0.205059731760845,"Q13480" -"P84103_S5","This study (HEK293F TR) 9min",-0.334045621896479,-1.89185531096039,0.0817988906208661,0.205645420079757,"P84103" -"O95671_S228","This study (HEK293F TR) 9min",0.224438688352642,1.76851242414679,0.101246401427713,0.237318948536775,"O95671" -"Q13480_S634","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480" -"Q13480_S637","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480" -"Q9BRP8_S64","This study (HEK293F TR) 9min",-0.411134776057704,-1.71725664992972,0.110479431688592,0.251065564307567,"Q9BRP8" -"Q99808_S273","This study (HEK293F TR) 9min",-0.207065890940088,-1.69999653474901,0.11375265733017,0.255981090465753,"Q99808" -"Q13480_S274","This study (HEK293F TR) 9min",0.28121679147228,1.69664648301734,0.114397807341695,0.257034333940225,"Q13480" -"P00533_S1064","This study (HEK293F TR) 9min",-0.187290803353122,-1.62449929786403,0.129095554115199,0.278115697114315,"P00533" -"Q99808_S269","This study (HEK293F TR) 9min",0.190859872397834,1.52541998010056,0.151943608873438,0.309220191090377,"Q99808" -"Q13480_S692","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480" -"Q13480_T684","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480" -"O95671_T249","This study (HEK293F TR) 9min",0.162366286784415,1.49124033123286,0.160591393142969,0.320549613465477,"O95671" -"Q13480_S650","This study (HEK293F TR) 9min",0.211691794627006,1.48860886107728,0.161274175622051,0.321421425305714,"Q13480" -"Q13480_S500","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480" -"Q13480_T503","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480" -"Q13480_S367","This study (HEK293F TR) 9min",0.274001878414593,1.32521071208301,0.208713224518601,0.380188151115672,"Q13480" -"Q9BRP8_S126","This study (HEK293F TR) 9min",0.217755930625859,1.15855704044504,0.268200033374105,0.44813214631777,"Q9BRP8" -"P84103_S138","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103" -"P84103_S140","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103" -"O95671_S223","This study (HEK293F TR) 9min",0.218493149069754,1.08046514790376,0.300253903449531,0.481974962032279,"O95671" -"P00533_Y1110","This study (HEK293F TR) 9min",0.130269181438862,1.03550703563009,0.319966553711467,0.502006666447852,"P00533" -"P26583_S168","This study (HEK293F TR) 9min",0.373270721538564,0.981388508185086,0.344935460546253,0.526515821002716,"P26583" -"Q99808_S266","This study (HEK293F TR) 9min",-0.19472892269923,-0.912851749006924,0.378516732260439,0.557959942639866,"Q99808" -"Q13480_S648","This study (HEK293F TR) 9min",0.19868154050242,0.902496733801499,0.383781433335196,0.562507173927707,"Q13480" -"Q13480_S381","This study (HEK293F TR) 9min",0.124994378467113,0.840098524303129,0.416565200083806,0.593496857555951,"Q13480" -"Q9ULI4_S1059","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4" -"P00533_S695","This study (HEK293F TR) 9min",0.0942230517222206,0.74563722550437,0.469617348896385,0.640013501811697,"P00533" -"O95671_T234","This study (HEK293F TR) 9min",-0.0872524560456788,-0.723399839387433,0.482695238841633,0.650843863100497,"O95671" -"Q9ULI4_S879","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4" -"P21333_S1459","This study (HEK293F TR) 9min",0.0582392146534189,0.597217959960633,0.560978743612849,0.713614018048643,"P21333" -"Q13480_S646","This study (HEK293F TR) 9min",-0.134850694893446,-0.585075482616889,0.56886369623831,0.719950789050142,"Q13480" -"O95671_S239","This study (HEK293F TR) 9min",0.0650025565003282,0.488814468530832,0.633400661867893,0.768664261154634,"O95671" -"Q13480_S389","This study (HEK293F TR) 9min",-0.04181148155903,-0.353928355987382,0.729265489090173,0.836494724272797,"Q13480" -"Q9BRP8_T112","This study (HEK293F TR) 9min",-0.0818735826436469,-0.285500099354485,0.779916742989811,0.870114664215326,"Q9BRP8" -"Q9BRP8_S55","This study (HEK293F TR) 9min",-0.0407263748641497,-0.246487955314125,0.809288710162003,0.889625328669485,"Q9BRP8" -"Q9BRP8_S117","This study (HEK293F TR) 9min",-0.0407225172113818,-0.191674223855935,0.851062561103756,0.915120834024333,"Q9BRP8" -"Q13480_Y265","This study (HEK293F TR) 9min",0.0143109870543085,0.136935787148897,0.893253075752858,0.939962605124081,"Q13480" -"P21333_S2339","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333" -"P21333_T2336","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333" -"P21333_S2152","This study (HEK293F TR) 9min",-0.0142071497466957,-0.132275595636638,0.896862681473085,0.941935040992472,"P21333" -"Q9BRP8_S131","This study (HEK293F TR) 9min",-0.031191359515386,-0.11545702221769,0.909909062699392,0.949129944207173,"Q9BRP8" -"Q13480_T387","This study (HEK293F TR) 9min",0.0105187450499038,0.0971695786109935,0.924125773034881,0.957486343559405,"Q13480" -"Q13480_T369","This study (HEK293F TR) 9min",0.0013739350822774,0.0075906635613288,0.99406287219463,0.996604381840525,"Q13480" -"Q13480_S418","This study (HEK293F TR) 12min",1.22802565942112,10.8140946681642,1.00231715879494e-07,2.3110904470289e-05,"Q13480" -"Q13480_S419","This study (HEK293F TR) 12min",0.738599752638109,7.14219810241838,9.1769089885754e-06,0.0003545937511537,"Q13480" -"P84103_S150","This study (HEK293F TR) 12min",-1.4276699947204,-6.74494319267636,1.63875691221844e-05,0.000521617557938,"P84103" -"P84103_S148","This study (HEK293F TR) 12min",-1.43263528491908,-6.56720861354789,2.13848044893434e-05,0.0006259210711296,"P84103" -"Q13480_S401","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480" -"Q13480_S402","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480" -"Q13480_S253","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480" -"Q13480_S256","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480" -"P00533_S1042","This study (HEK293F TR) 12min",0.598529044819585,5.73269663265156,7.90474886446553e-05,0.0015894214475115,"P00533" -"P00533_S1045","This study (HEK293F TR) 12min",0.612488360936476,5.55688560584916,0.0001054081747554,0.0019436306304023,"P00533" -"P84103_S152","This study (HEK293F TR) 12min",-1.262820964745,-5.27916453670207,0.0001675468599323,0.0026824350128627,"P84103" -"Q13480_S266","This study (HEK293F TR) 12min",0.439881933079729,5.24627892485434,0.000177123839181,0.0027904922084,"Q13480" -"P00533_T1041","This study (HEK293F TR) 12min",0.635730680478977,4.69764215135396,0.0004575649887099,0.0053948370582447,"P00533" -"Q99808_S269","This study (HEK293F TR) 12min",0.56759342706096,4.53640853540863,0.0006093276000663,0.0065985953883397,"Q99808" -"Q9BRP8_T68","This study (HEK293F TR) 12min",-0.495689206430953,-3.86500305617661,0.0020746221048463,0.01539369601796,"Q9BRP8" -"P84103_S158","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103" -"P84103_S160","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103" -"Q13480_T638","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480" -"Q13480_Y659","This study (HEK293F TR) 12min",0.452361055616073,3.00423512223471,0.0105031563119427,0.0466058670773552,"Q13480" -"P26583_S168","This study (HEK293F TR) 12min",0.994261219026512,2.61407198096008,0.0219361667939551,0.0771707028457242,"P26583" -"O95671_S223","This study (HEK293F TR) 12min",0.522119409154012,2.58191996882663,0.0232983537076516,0.0803923543354305,"O95671" -"O95671_S21","This study (HEK293F TR) 12min",-0.308407207386958,-2.56420004857986,0.0240839078599614,0.0821266251232947,"O95671" -"Q13480_T387","This study (HEK293F TR) 12min",0.261440202541962,2.41512026315417,0.0317903458648704,0.0996462352947721,"Q13480" -"P00533_S1039","This study (HEK293F TR) 12min",0.316931537520061,2.16799667147888,0.0500167990173577,0.136134310437061,"P00533" -"P21333_S977","This study (HEK293F TR) 12min",-0.371776330669387,-2.14511197526313,0.0521318833876477,0.139968632168718,"P21333" -"Q99808_S266","This study (HEK293F TR) 12min",0.457418491059631,2.14428993805316,0.0522093982680528,0.140123379860785,"Q99808" -"Q9BRP8_T72","This study (HEK293F TR) 12min",-0.402712129742984,-2.13779125928544,0.0528260123391726,0.141263634489955,"Q9BRP8" -"Q9BRP8_S126","This study (HEK293F TR) 12min",0.383407056161037,2.03989366900358,0.0629777730243479,0.159392298642819,"Q9BRP8" -"Q13480_S500","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480" -"Q13480_T503","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480" -"Q13480_S389","This study (HEK293F TR) 12min",0.228785992039377,1.93664149214897,0.0756222666353915,0.180882713781091,"Q13480" -"O95671_S228","This study (HEK293F TR) 12min",0.237468371098316,1.87118258314456,0.0848020377383626,0.195212827064335,"O95671" -"Q9ULI4_S1262","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4" -"P00533_S991","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533" -"P00533_S995","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533" -"P26583_S181","This study (HEK293F TR) 12min",0.463931752115329,1.72001514861467,0.109964110250647,0.233756638467073,"P26583" -"Q2TAK8_S235","This study (HEK293F TR) 12min",-0.244786646125297,-1.68416261328661,0.116830470117705,0.243571030715184,"Q2TAK8" -"Q9ULI4_S879","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4" -"Q9BRP8_S64","This study (HEK293F TR) 12min",-0.381948637154169,-1.59534993214131,0.135486241778974,0.269611938542504,"Q9BRP8" -"Q9BRP8_S55","This study (HEK293F TR) 12min",0.263269714953562,1.59338546461594,0.135926637898369,0.270281204667307,"Q9BRP8" -"P21333_S2158","This study (HEK293F TR) 12min",0.217817818547985,1.51689893538148,0.15406148739414,0.293802889869716,"P21333" -"Q13480_S634","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480" -"Q13480_S637","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480" -"P00533_Y1110","This study (HEK293F TR) 12min",0.182232933285991,1.44856582698123,0.171970827810516,0.317727807565592,"P00533" -"P26583_T179","This study (HEK293F TR) 12min",0.37595083276565,1.40806385301275,0.183389876434761,0.3317068329613,"P26583" -"P00533_T693","This study (HEK293F TR) 12min",0.142229130541327,1.26799113950133,0.227811765275613,0.384475696343489,"P00533" -"Q9ULI4_S1059","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4" -"P84103_S138","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103" -"P84103_S140","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103" -"Q9BRP8_S131","This study (HEK293F TR) 12min",0.308646201724812,1.14247573442154,0.274576623538234,0.436863068237419,"Q9BRP8" -"P21333_S2339","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333" -"P21333_T2336","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333" -"Q13480_Y265","This study (HEK293F TR) 12min",0.114953294053219,1.09993949032307,0.292002403574503,0.455684267966104,"Q13480" -"Q9BRP8_S117","This study (HEK293F TR) 12min",0.215841379723052,1.01593004969857,0.328841846262963,0.493988590134667,"Q9BRP8" -"Q13480_S367","This study (HEK293F TR) 12min",0.191708380502693,0.92719802108015,0.371305657642422,0.53649590234407,"Q13480" -"Q13480_S274","This study (HEK293F TR) 12min",0.149512763261884,0.902045367299778,0.384012057448678,0.54881259842318,"Q13480" -"O95671_S239","This study (HEK293F TR) 12min",0.108603373215278,0.81668941987864,0.429330865409643,0.59052441578603,"O95671" -"P21333_S1084","This study (HEK293F TR) 12min",-0.0864207147878026,-0.797223231819882,0.440138816950366,0.599946394112229,"P21333" -"P21333_S2152","This study (HEK293F TR) 12min",0.0816936932427836,0.760608716463993,0.460937618461087,0.618414402842063,"P21333" -"Q13480_S648","This study (HEK293F TR) 12min",-0.164182265564548,-0.745786236836282,0.469530461939005,0.626434176494061,"Q13480" -"P84103_S5","This study (HEK293F TR) 12min",-0.124327407381937,-0.704123779913945,0.49420954817595,0.647421593363933,"P84103" -"Q13480_S651","This study (HEK293F TR) 12min",0.147218162711148,0.688694561346873,0.503543869489854,0.655017614046599,"Q13480" -"Q13480_S646","This study (HEK293F TR) 12min",-0.12629115776509,-0.547938296781049,0.593343039718602,0.730381080424971,"Q13480" -"P00533_S695","This study (HEK293F TR) 12min",-0.0667963474886992,-0.528595097536559,0.6063050173937,0.74035260643068,"P00533" -"Q13480_S381","This study (HEK293F TR) 12min",0.078263978246408,0.526019277324531,0.608041779725835,0.74170244337623,"Q13480" -"P00533_S1064","This study (HEK293F TR) 12min",-0.0474659432084152,-0.411704098834701,0.687498272416577,0.800511463689956,"P00533" -"P21333_S1459","This study (HEK293F TR) 12min",0.0375077397661947,0.384625650589643,0.706950920127375,0.814587470561265,"P21333" -"Q13480_S650","This study (HEK293F TR) 12min",0.0409547331526969,0.287992167016107,0.778051879597256,0.863562856129909,"Q13480" -"O95671_T249","This study (HEK293F TR) 12min",0.0298440893599583,0.274100680528459,0.788465134956283,0.870691608475478,"O95671" -"O95671_T234","This study (HEK293F TR) 12min",-0.0237811195920656,-0.197166462389864,0.846853342120868,0.908436985526979,"O95671" -"Q13480_T369","This study (HEK293F TR) 12min",-0.0332424931421329,-0.183656844225451,0.85721556604946,0.914681326521504,"Q13480" -"Q99808_S273","This study (HEK293F TR) 12min",-0.0221335212303035,-0.18171466687479,0.858707590795976,0.915828310495618,"Q99808" -"Q9BRP8_T112","This study (HEK293F TR) 12min",0.0236583320625598,0.0824986025568328,0.935550994272012,0.963302746964072,"Q9BRP8" -"Q13480_S692","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480" -"Q13480_T684","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480" -"Q13480_S418","This study (HEK293F TR) 15min",1.19749459863645,10.5452356430193,1.33532459201629e-07,2.7226827001595e-05,"Q13480" -"P84103_S150","This study (HEK293F TR) 15min",-1.56768599675222,-7.40644058581533,6.31053103970649e-06,0.0002896563098532,"P84103" -"P84103_S148","This study (HEK293F TR) 15min",-1.58278198443578,-7.25548197156277,7.80740041793263e-06,0.0003358679675867,"P84103" -"P00533_S1042","This study (HEK293F TR) 15min",0.731570451998518,7.00696399450998,1.1153725624496e-05,0.0004307639349707,"P00533" -"Q13480_S419","This study (HEK293F TR) 15min",0.701683685031043,6.78522280277849,1.5437342018886e-05,0.0005452996245897,"Q13480" -"P00533_S1045","This study (HEK293F TR) 15min",0.725827613903997,6.58517169838804,2.08132253096596e-05,0.0006740087464202,"P00533" -"P84103_S152","This study (HEK293F TR) 15min",-1.41677309205398,-5.92275427232507,5.8195448312691e-05,0.0013745993327396,"P84103" -"Q13480_S253","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480" -"Q13480_S256","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480" -"P00533_T1041","This study (HEK293F TR) 15min",0.723730501484713,5.34790441045508,0.0001492403084544,0.0026489081079376,"P00533" -"Q13480_S266","This study (HEK293F TR) 15min",0.420109140926637,5.01045750333784,0.0002650230072609,0.0039448055044581,"Q13480" -"Q13480_S401","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480" -"Q13480_S402","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480" -"Q99808_S269","This study (HEK293F TR) 15min",0.42514576944972,3.39791619383473,0.0049828685300707,0.0317251202424877,"Q99808" -"P00533_S1039","This study (HEK293F TR) 15min",0.46835256947163,3.20380489628238,0.0071949947049766,0.0414213771704189,"P00533" -"Q13480_T638","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480" -"Q13480_Y627","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480" -"P84103_S158","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103" -"P84103_S160","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103" -"P00533_S991","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533" -"P00533_S995","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533" -"P21333_S977","This study (HEK293F TR) 15min",-0.493961862021035,-2.85011018220758,0.0140618674822364,0.0659996886879095,"P21333" -"P00533_T693","This study (HEK293F TR) 15min",0.302970924035009,2.70102506948318,0.0186297949781265,0.0796232112261325,"P00533" -"Q13480_Y659","This study (HEK293F TR) 15min",0.40142027081858,2.66592550662378,0.0199012507037629,0.0834185558368584,"Q13480" -"Q13480_T387","This study (HEK293F TR) 15min",0.283010041859999,2.61437713146848,0.0219236176140641,0.0891084896153846,"Q13480" -"Q9BRP8_T68","This study (HEK293F TR) 15min",-0.324276876289879,-2.52846158771942,0.0257472549046568,0.0994401063525738,"Q9BRP8" -"Q13480_S500","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480" -"Q13480_T503","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480" -"P26583_T179","This study (HEK293F TR) 15min",0.594304072262581,2.22587106855234,0.0450224204893746,0.145255740434629,"P26583" -"P21333_S2152","This study (HEK293F TR) 15min",0.231500547426709,2.15538467229837,0.0511722669691234,0.158296857191239,"P21333" -"P21333_S1459","This study (HEK293F TR) 15min",0.20735146219727,2.1262995729809,0.0539331068001716,0.164102366013498,"P21333" -"P26583_S181","This study (HEK293F TR) 15min",0.56274483949035,2.0863621520079,0.0579516156115763,0.171972969826382,"P26583" -"Q13480_S634","This study (HEK293F TR) 15min",-0.251780324857542,-1.98330492790206,0.0696433861229981,0.194642514951407,"Q13480" -"Q13480_S637","This study (HEK293F TR) 15min",-0.251780324857542,-1.98330492790206,0.0696433861229981,0.194642514951407,"Q13480" -"O95671_T234","This study (HEK293F TR) 15min",-0.23101300138484,-1.91530159346704,0.0785101662183716,0.210554783116235,"O95671" -"Q9ULI4_S1262","This study (HEK293F TR) 15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4" -"Q9ULI4_S1267","This study (HEK293F TR) 15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4" -"Q9BRP8_S126","This study (HEK293F TR) 15min",0.345230442598623,1.83677734378589,0.0900224335815617,0.229808936841792,"Q9BRP8" -"P21333_S2158","This study (HEK293F TR) 15min",0.261661206390812,1.82222743782285,0.0923161811418474,0.233431833428747,"P21333" -"Q9BRP8_T112","This study (HEK293F TR) 15min",0.515214106322935,1.79659511400951,0.0964853757143596,0.240084613911934,"Q9BRP8" -"O95671_S239","This study (HEK293F TR) 15min",0.231370741987128,1.73989104993818,0.106313659496786,0.256044264962412,"O95671" -"Q13480_S274","This study (HEK293F TR) 15min",0.268740390601147,1.62137344705138,0.129768067771291,0.292354386267867,"Q13480" -"P84103_S5","This study (HEK293F TR) 15min",-0.275797441045292,-1.56196884314357,0.143139766362122,0.311761534736955,"P84103" -"Q13480_Y265","This study (HEK293F TR) 15min",0.160439380588173,1.53517662947704,0.14954922262543,0.320779311946034,"Q13480" -"Q9BRP8_S55","This study (HEK293F TR) 15min",0.241586899117331,1.4621547091472,0.168275760731246,0.346375325323939,"Q9BRP8" -"Q13480_S381","This study (HEK293F TR) 15min",0.210201808893093,1.41278537181092,0.18202697812748,0.364557057630292,"Q13480" -"Q99808_S273","This study (HEK293F TR) 15min",0.169516093914348,1.39171531791279,0.188174667079203,0.372163317074396,"Q99808" -"Q13480_S692","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480" -"Q13480_T684","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480" -"Q9ULI4_S1059","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4" -"Q9ULI4_S1062","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4" -"Q9BRP8_S131","This study (HEK293F TR) 15min",0.331919525527716,1.22862358770976,0.241746138067417,0.436189698711396,"Q9BRP8" -"P26583_S168","This study (HEK293F TR) 15min",0.453378525882943,1.19200475549071,0.255304123215189,0.451992083233722,"P26583" -"Q99808_S266","This study (HEK293F TR) 15min",0.250295915548659,1.17333912759733,0.26243991816857,0.460586394412772,"Q99808" -"Q13480_S367","This study (HEK293F TR) 15min",0.228413165524687,1.10472079784831,0.290002886037876,0.490131803250929,"Q13480" -"Q13480_S651","This study (HEK293F TR) 15min",0.214935586237271,1.00548034668756,0.333652019434038,0.534074858721006,"Q13480" -"Q13480_S389","This study (HEK293F TR) 15min",0.116999989141352,0.990388579004969,0.340688634230938,0.541089932556352,"Q13480" -"Q13480_T369","This study (HEK293F TR) 15min",0.177355166169711,0.979844982942209,0.345667591618793,0.546010499175559,"Q13480" -"Q13480_S646","This study (HEK293F TR) 15min",-0.215355438843879,-0.934360682496404,0.3677414175638,0.567613387351433,"Q13480" -"Q2TAK8_S235","This study (HEK293F TR) 15min",-0.127054642270805,-0.874151763358307,0.398448849028704,0.596687577898067,"Q2TAK8" -"P00533_S1064","This study (HEK293F TR) 15min",0.0933249044970843,0.809469761005293,0.433319005715053,0.626870053319967,"P00533" -"P00533_Y1110","This study (HEK293F TR) 15min",0.0967046875601518,0.768703566268617,0.456286824500938,0.646056399640043,"P00533" -"Q9ULI4_S879","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4" -"Q9ULI4_S885","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4" -"Q9BRP8_S117","This study (HEK293F TR) 15min",0.0913532575775306,0.429984832518911,0.674494851065323,0.808414084289545,"Q9BRP8" -"O95671_T249","This study (HEK293F TR) 15min",0.0319545032353651,0.293483610008018,0.773947605181916,0.874876182642409,"O95671" -"O95671_S228","This study (HEK293F TR) 15min",0.0369635109008434,0.29126185306125,0.775607287266316,0.875862006535801,"O95671" -"P21333_S1084","This study (HEK293F TR) 15min",0.0289944901738117,0.267471534088705,0.793449587031667,0.887214175708526,"P21333" -"Q13480_S648","This study (HEK293F TR) 15min",0.0520249411043067,0.236319586128236,0.816996322222741,0.900709375682836,"Q13480" -"O95671_S223","This study (HEK293F TR) 15min",0.0445685528352051,0.220394864717579,0.829106992757838,0.908049038850524,"O95671" -"P21333_S2339","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333" -"P21333_T2336","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333" -"P84103_S138","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103" -"P84103_S140","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103" -"P00533_S695","This study (HEK293F TR) 15min",-0.0245724730021255,-0.194455075039402,0.848930728584608,0.918916067578158,"P00533" -"Q9BRP8_S64","This study (HEK293F TR) 15min",0.0447796224341097,0.187038676571412,0.854618936445188,0.922321519236564,"Q9BRP8" -"Q9BRP8_T72","This study (HEK293F TR) 15min",-0.0304428670675775,-0.161605500102992,0.874188175237224,0.934059364936993,"Q9BRP8" -"O95671_S21","This study (HEK293F TR) 15min",-0.0170432300035212,-0.141703080071516,0.889563082631497,0.942942431396507,"O95671" -"Q13480_S650","This study (HEK293F TR) 15min",0.0018571547029626,0.0130594431026136,0.989785608782202,0.994805705262154,"Q13480" +"Protein","Label","log2FC","Tvalue","pvalue","adj.pvalue","GlobalProtein","issue" +"Q13480_Y659","This study (HEK293F TR) 1min",1.70376713958474,11.3151143700444,5.96335812410164e-08,9.49193483604991e-05,"Q13480",NA +"Q13480_T638","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480",NA +"Q13480_S650","This study (HEK293F TR) 1min",1.06751538239836,7.50672863997618,5.48699890642222e-06,0.001124729874958,"Q13480",NA +"Q13480_Y265","This study (HEK293F TR) 1min",0.586083652098868,5.60798678181296,9.69062701618218e-05,0.0071061337032964,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 1min",-1.10504046382547,-5.22069888817077,0.000184969365551,0.0106146248093664,"P84103",NA +"P84103_S148","This study (HEK293F TR) 1min",-1.10960028782523,-5.08641427759661,0.0002325701098662,0.012320066445345,"P84103",NA +"Q13480_S651","This study (HEK293F TR) 1min",1.0861403567649,5.08102358287817,0.0002347301004535,0.0123416586748211,"Q13480",NA +"Q13480_S634","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480",NA +"Q13480_S266","This study (HEK293F TR) 1min",0.366472954535347,4.37076222805317,0.0008205492144159,0.0260878607518859,"Q13480",NA +"P84103_S152","This study (HEK293F TR) 1min",-0.939674889678251,-3.92826734122249,0.0018447735121165,0.042278987184565,"P84103",NA +"Q13480_S389","This study (HEK293F TR) 1min",-0.444828839203883,-3.76541404142624,0.0024975699639907,0.0505279191198013,"Q13480",NA +"P00533_Y1110","This study (HEK293F TR) 1min",0.4729517886929,3.75948401069197,0.0025253801476862,0.0508611561744001,"P00533",NA +"P21333_S2158","This study (HEK293F TR) 1min",0.532989570430392,3.71177765595511,0.0027609471504149,0.0535930036360831,"P21333",NA +"Q99808_S269","This study (HEK293F TR) 1min",0.446638577272779,3.56969435793941,0.0036043463347816,0.0621972219601596,"Q99808",NA +"P00533_S1064","This study (HEK293F TR) 1min",0.403387983895019,3.4988557092615,0.004118602371085,0.0668151288042883,"P00533",NA +"Q13480_S500","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480",NA +"Q13480_S419","This study (HEK293F TR) 1min",0.332355122205279,3.21384635543824,0.0070593860768096,0.0889962409780329,"Q13480",NA +"Q99808_S273","This study (HEK293F TR) 1min",0.348067131600315,2.85760689456946,0.0138639473793892,0.125844141931789,"Q99808",NA +"Q2TAK8_S235","This study (HEK293F TR) 1min",-0.395245276338771,-2.71933672863498,0.0179984120064434,0.143797021787113,"Q2TAK8",NA +"P84103_S158","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103",NA +"P84103_S160","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103",NA +"P21333_S2152","This study (HEK293F TR) 1min",0.235388239881175,2.19158101317147,0.0479216138099419,0.233355984429484,"P21333",NA +"P21333_S1084","This study (HEK293F TR) 1min",0.224443985987218,2.0704753520104,0.059626425674296,0.261572734421199,"P21333",NA +"Q13480_S648","This study (HEK293F TR) 1min",0.452818744361604,2.05689686498815,0.0610934625343971,0.26455777067529,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 1min",0.271657661801562,2.00737595652264,0.0667322021046199,0.276099869901749,"P00533",NA +"Q99808_S266","This study (HEK293F TR) 1min",0.421718743267295,1.97693638440734,0.0704329417495169,0.282109132661713,"Q99808",NA +"Q13480_S646","This study (HEK293F TR) 1min",-0.443829611103984,-1.92563949426819,0.0770987976152556,0.294165738271523,"Q13480",NA +"O95671_S223","This study (HEK293F TR) 1min",0.386873469280648,1.91311856681102,0.0788112010283812,0.297352889764751,"O95671",NA +"Q9ULI4_S1059","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4",NA +"Q9BRP8_T68","This study (HEK293F TR) 1min",-0.217853231282572,-1.69865188465098,0.114011221758164,0.359719656961002,"Q9BRP8",NA +"Q13480_S253","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480",NA +"P21333_S977","This study (HEK293F TR) 1min",-0.292568293874517,-1.68808958236406,0.116060371830274,0.36242335903682,"P21333",NA +"Q9BRP8_S55","This study (HEK293F TR) 1min",0.271474908656177,1.64304570139027,0.125167558329347,0.375524351863621,"Q9BRP8",NA +"Q13480_S418","This study (HEK293F TR) 1min",0.181323359909273,1.59674837782528,0.13517349095986,0.389512427331363,"Q13480",NA +"Q13480_S692","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480",NA +"Q13480_T369","This study (HEK293F TR) 1min",-0.251957076418126,-1.39200273990806,0.188089661184504,0.45798216891286,"Q13480",NA +"P00533_S695","This study (HEK293F TR) 1min",-0.168567207702282,-1.3339621543218,0.205910161052075,0.478556124383805,"P00533",NA +"O95671_T234","This study (HEK293F TR) 1min",-0.156675662315562,-1.29897946821877,0.217301232302363,0.491577787708395,"O95671",NA +"O95671_S228","This study (HEK293F TR) 1min",0.162546456010681,1.28081940357915,0.223412290527193,0.498207287543873,"O95671",NA +"P26583_T179","This study (HEK293F TR) 1min",0.333007351272826,1.24722589564544,0.235079770638176,0.51066542362367,"P26583",NA +"P26583_S181","This study (HEK293F TR) 1min",0.330986639809748,1.22712453257631,0.242289787055476,0.518593228471161,"P26583",NA +"Q9BRP8_S64","This study (HEK293F TR) 1min",0.253341533263867,1.05817473499178,0.309911354836916,0.584520502733944,"Q9BRP8",NA +"Q13480_T387","This study (HEK293F TR) 1min",-0.108576383788634,-1.00300191798484,0.334800326491917,0.607980734215025,"Q13480",NA +"Q13480_S381","This study (HEK293F TR) 1min",-0.14544164513781,-0.977526453196785,0.346769414529359,0.618941697273364,"Q13480",NA +"Q9BRP8_T112","This study (HEK293F TR) 1min",0.264359185664373,0.9218428134622,0.373986162515971,0.64218907092272,"Q9BRP8",NA +"P00533_T693","This study (HEK293F TR) 1min",-0.100727642101091,-0.897999989178961,0.386083280139053,0.652213608541932,"P00533",NA +"O95671_T249","This study (HEK293F TR) 1min",-0.0965557732785615,-0.886808870104599,0.391852935916219,0.65697319746248,"O95671",NA +"Q9BRP8_T72","This study (HEK293F TR) 1min",0.164745862786635,0.87455092473495,0.398239695546514,0.661872791180291,"Q9BRP8",NA +"P00533_S1042","This study (HEK293F TR) 1min",-0.0770847337352726,-0.738315704706098,0.473898731438467,0.722176047660012,"P00533",NA +"P84103_S5","This study (HEK293F TR) 1min",-0.125625140776993,-0.711473446111361,0.489799939092637,0.733859605703944,"P84103",NA +"P26583_S168","This study (HEK293F TR) 1min",0.261442060514788,0.687373048408072,0.50434819267248,0.742911602813247,"P26583",NA +"P00533_S991","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533",NA +"P00533_S995","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533",NA +"P84103_S138","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103",NA +"P84103_S140","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103",NA +"Q9ULI4_S1262","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4",NA +"Q9ULI4_S879","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4",NA +"Q9BRP8_S126","This study (HEK293F TR) 1min",0.0971218156828257,0.516730648927641,0.614325294369067,0.814900075274285,"Q9BRP8",NA +"P21333_S2339","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333",NA +"Q9BRP8_S131","This study (HEK293F TR) 1min",0.106411616104776,0.393890119434163,0.70027040804751,0.864225244902764,"Q9BRP8",NA +"Q13480_S401","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480",NA +"Q9BRP8_S117","This study (HEK293F TR) 1min",-0.0682104620799144,-0.321055481667722,0.753450037173131,0.893447041469526,"Q9BRP8",NA +"P21333_S1459","This study (HEK293F TR) 1min",-0.0301357324557081,-0.309028903741594,0.762367953656862,0.89823761092272,"P21333",NA +"O95671_S21","This study (HEK293F TR) 1min",0.0361812416067515,0.300822870748626,0.768473367421129,0.901359831579359,"O95671",NA +"P00533_S1045","This study (HEK293F TR) 1min",0.0291655004487889,0.264608048034519,0.795605590500253,0.914135909932564,"P00533",NA +"P00533_S1039","This study (HEK293F TR) 1min",0.0318122946808987,0.217614660629752,0.831226107627063,0.930639948749166,"P00533",NA +"O95671_S239","This study (HEK293F TR) 1min",0.0231111665258367,0.173794281189501,0.864798021392135,0.944482708489422,"O95671",NA +"Q13480_S274","This study (HEK293F TR) 1min",0.0137576395281051,0.0830030475697277,0.935157887951278,0.973627044957429,"Q13480",NA +"Q13480_S367","This study (HEK293F TR) 1min",-0.0155050786974335,-0.0749903486078975,0.9414040905418,0.976574672126427,"Q13480",NA +"Q13480_T638","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480",NA +"Q13480_Y659","This study (HEK293F TR) 2min",1.53392426207866,10.1871482652472,1.97505081494113e-07,7.73451844140002e-05,"Q13480",NA +"Q13480_S650","This study (HEK293F TR) 2min",0.896359565618345,6.30316727411138,3.20069618421293e-05,0.0019890674032445,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 2min",-1.18411375056542,-5.59427599568965,9.91141101890676e-05,0.0042123923678373,"P84103",NA +"Q13480_Y265","This study (HEK293F TR) 2min",0.580689647874493,5.55637383495289,0.0001054971830743,0.0043863112430809,"Q13480",NA +"P84103_S148","This study (HEK293F TR) 2min",-1.19493437282168,-5.47758622758076,0.0001201889852968,0.0048168619697193,"P84103",NA +"Q13480_S651","This study (HEK293F TR) 2min",1.09278736799033,5.11211866242446,0.0002225530163094,0.0073849586306375,"Q13480",NA +"Q13480_S266","This study (HEK293F TR) 2min",0.4038022568649,4.81597244780447,0.0003716011999828,0.01040040726645,"Q13480",NA +"Q13480_S419","This study (HEK293F TR) 2min",0.476692890568188,4.6095805560344,0.0005348342755941,0.0131034397520578,"Q13480",NA +"P21333_S2158","This study (HEK293F TR) 2min",0.649109433673935,4.52044472509101,0.0006269666756207,0.0146340665445381,"P21333",NA +"Q13480_S418","This study (HEK293F TR) 2min",0.511031965638642,4.50018939952721,0.0006501138216861,0.0149829828600927,"Q13480",NA +"Q99808_S269","This study (HEK293F TR) 2min",0.491633864941996,3.9293126997034,0.0018412032290874,0.0285065864238666,"Q99808",NA +"P84103_S152","This study (HEK293F TR) 2min",-0.928196684000575,-3.8802832341715,0.0020165446810385,0.0301796676361804,"P84103",NA +"P00533_S1064","This study (HEK293F TR) 2min",0.436525530785271,3.78627997512177,0.0024021799478382,0.0337082052956873,"P00533",NA +"Q99808_S273","This study (HEK293F TR) 2min",0.450972396950133,3.70245195189826,0.0028095580813648,0.0371139948346673,"Q99808",NA +"Q13480_S500","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480",NA +"Q2TAK8_S235","This study (HEK293F TR) 2min",-0.434520604850169,-2.98955588049831,0.0107994170685152,0.08403652994981,"Q2TAK8",NA +"P21333_S2152","This study (HEK293F TR) 2min",0.32018683815949,2.98109793221604,0.010973878827176,0.0847898952963221,"P21333",NA +"Q13480_S634","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480",NA +"Q13480_S648","This study (HEK293F TR) 2min",0.633940882545705,2.87963126556173,0.013298278653527,0.0944547234203235,"Q13480",NA +"P00533_Y1110","This study (HEK293F TR) 2min",0.360094363283572,2.86238266451284,0.0137393011954488,0.0961498328009507,"P00533",NA +"P21333_S977","This study (HEK293F TR) 2min",-0.469231782120286,-2.7074201124853,0.0184068657711229,0.114576518873285,"P21333",NA +"Q13480_S389","This study (HEK293F TR) 2min",-0.312408532177169,-2.6444946236548,0.020718892461938,0.122596915174104,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 2min",0.329817671278109,2.43714113921656,0.0305182449356552,0.153714275915501,"P00533",NA +"Q13480_S253","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480",NA +"P84103_S158","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103",NA +"P84103_S160","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103",NA +"Q9ULI4_S1059","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4",NA +"Q13480_S646","This study (HEK293F TR) 2min",-0.430733838418522,-1.8688209845064,0.0851514044386808,0.274651964257931,"Q13480",NA +"P84103_S5","This study (HEK293F TR) 2min",-0.326571020989046,-1.84952317876912,0.0880555036238635,0.279807922032812,"P84103",NA +"P21333_S1084","This study (HEK293F TR) 2min",0.197434612274215,1.8213163366773,0.0924615508268959,0.286984111506247,"P21333",NA +"Q13480_S274","This study (HEK293F TR) 2min",0.281472158278026,1.69818717050822,0.114100702850856,0.323691277906633,"Q13480",NA +"Q9BRP8_S64","This study (HEK293F TR) 2min",0.399533854596605,1.66880110521659,0.119886338958943,0.332745619487633,"Q9BRP8",NA +"O95671_T234","This study (HEK293F TR) 2min",-0.189141689965618,-1.56815148069831,0.141694719619396,0.366645882964786,"O95671",NA +"Q9BRP8_T72","This study (HEK293F TR) 2min",0.291158427826943,1.54561011726411,0.147024551772785,0.374806075800659,"Q9BRP8",NA +"P84103_S138","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103",NA +"P84103_S140","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103",NA +"Q13480_S367","This study (HEK293F TR) 2min",0.306902684123715,1.48433553419799,0.162388208749263,0.395807221118104,"Q13480",NA +"Q13480_T369","This study (HEK293F TR) 2min",-0.260020218164765,-1.43654967450165,0.175294781386693,0.412690032824256,"Q13480",NA +"Q9ULI4_S1262","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4",NA +"P00533_S1045","This study (HEK293F TR) 2min",0.150452844596394,1.36500430019351,0.196214317150538,0.438566907553858,"P00533",NA +"Q9BRP8_T68","This study (HEK293F TR) 2min",-0.16579615527638,-1.29275085785997,0.219381860614282,0.466298693591792,"Q9BRP8",NA +"P00533_S1042","This study (HEK293F TR) 2min",0.131773109895089,1.26211964132385,0.229848400038462,0.47823367861317,"P00533",NA +"Q9BRP8_S117","This study (HEK293F TR) 2min",-0.198247036676712,-0.933116356474329,0.368358889085155,0.613409357231576,"Q9BRP8",NA +"P26583_T179","This study (HEK293F TR) 2min",0.247496358028005,0.926958115580953,0.371425453330428,0.616125033041865,"P26583",NA +"P26583_S168","This study (HEK293F TR) 2min",-0.343340232494674,-0.902696458964186,0.38367941486351,0.627236966756459,"P26583",NA +"O95671_T249","This study (HEK293F TR) 2min",0.0821012646494896,0.754052577756511,0.464726100044519,0.693298187888527,"O95671",NA +"P00533_S695","This study (HEK293F TR) 2min",-0.0908929544419194,-0.719284390912856,0.485139735829573,0.708988059738136,"P00533",NA +"P26583_S181","This study (HEK293F TR) 2min",0.174684425506943,0.647638056091278,0.528884652253245,0.741153486016639,"P26583",NA +"O95671_S239","This study (HEK293F TR) 2min",0.080256664347921,0.603524243374771,0.556907186371671,0.761985173089798,"O95671",NA +"P21333_S2339","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333",NA +"P00533_T693","This study (HEK293F TR) 2min",0.0637686410983846,0.568505703318612,0.579718799597352,0.777224259072107,"P00533",NA +"Q9ULI4_S879","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4",NA +"Q13480_S401","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480",NA +"P00533_S1039","This study (HEK293F TR) 2min",0.07711090241499,0.527483572883148,0.607054163964584,0.794490308538127,"P00533",NA +"P21333_S1459","This study (HEK293F TR) 2min",0.0513012072480769,0.526071694450907,0.60800641233835,0.79514604834379,"P21333",NA +"Q99808_S266","This study (HEK293F TR) 2min",0.107278422718196,0.502900619238089,0.623740056153892,0.805258346689767,"Q99808",NA +"Q9BRP8_S131","This study (HEK293F TR) 2min",-0.100860850372776,-0.373343567683875,0.715120630373446,0.860345181267785,"Q9BRP8",NA +"O95671_S223","This study (HEK293F TR) 2min",-0.053394822381362,-0.264041435199212,0.796032418590052,0.90453729804921,"O95671",NA +"Q9BRP8_T112","This study (HEK293F TR) 2min",0.0741987887600501,0.258737444716187,0.800031208816391,0.90621850559117,"Q9BRP8",NA +"O95671_S228","This study (HEK293F TR) 2min",0.024946759661848,0.196573303506667,0.847307701707302,0.93027900165439,"O95671",NA +"Q13480_S692","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480",NA +"O95671_S21","This study (HEK293F TR) 2min",-0.0211222359114024,-0.17561729120739,0.863395391360773,0.937534798880188,"O95671",NA +"Q9BRP8_S55","This study (HEK293F TR) 2min",0.0261460947034706,0.15824382711217,0.876781556764774,0.944422108219874,"Q9BRP8",NA +"Q13480_T387","This study (HEK293F TR) 2min",-0.0148992409276118,-0.137635521698756,0.892711300521128,0.952203158960805,"Q13480",NA +"P00533_S991","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533",NA +"P00533_S995","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533",NA +"Q13480_S381","This study (HEK293F TR) 2min",0.0123554922163631,0.0830423808278424,0.935127236886922,0.97237231049062,"Q13480",NA +"Q9BRP8_S126","This study (HEK293F TR) 2min",0.0025408843401635,0.0135186189087582,0.989426489479751,0.995844391033133,"Q9BRP8",NA +"Q13480_T638","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480",NA +"Q13480_Y659","This study (HEK293F TR) 3min",1.21276599288191,8.0542614038816,2.61257827330921e-06,0.0002647072889936,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 3min",-1.47891469175969,-6.98704575960999,1.14811459927821e-05,0.0007134939379368,"P84103",NA +"P84103_S148","This study (HEK293F TR) 3min",-1.49208154426403,-6.83971061773762,1.42438692967131e-05,0.0008172502822182,"P84103",NA +"Q13480_S418","This study (HEK293F TR) 3min",0.67591857726473,5.95219442398075,5.55243504261198e-05,0.0021139953881759,"Q13480",NA +"Q13480_Y265","This study (HEK293F TR) 3min",0.573283167282483,5.48550435222461,0.0001186197335806,0.0036444916027821,"Q13480",NA +"P84103_S152","This study (HEK293F TR) 3min",-1.27252645747826,-5.31973789941863,0.0001564738994305,0.0044018766360321,"P84103",NA +"Q13480_S650","This study (HEK293F TR) 3min",0.70013849495635,4.9233479710903,0.0003081487892753,0.0071755477627244,"Q13480",NA +"Q13480_S266","This study (HEK293F TR) 3min",0.400521317427366,4.77684212184553,0.0003979930144865,0.0086283696457855,"Q13480",NA +"Q13480_S419","This study (HEK293F TR) 3min",0.464803885054938,4.49461486275724,0.0006566386574765,0.0121944001790981,"Q13480",NA +"P21333_S2158","This study (HEK293F TR) 3min",0.602485166897726,4.19574998199223,0.0011276606624867,0.0175804613172465,"P21333",NA +"Q99808_S269","This study (HEK293F TR) 3min",0.511424131815868,4.0874835510283,0.0013750662085058,0.0200065180847649,"Q99808",NA +"Q13480_S651","This study (HEK293F TR) 3min",0.861180623684671,4.0286497327957,0.0015323453317053,0.0215127806369725,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 3min",0.504292168698397,3.7263958166852,0.0026864706403833,0.0314165887194938,"P00533",NA +"P00533_S1042","This study (HEK293F TR) 3min",0.297204100764812,2.84661364792789,0.0141551315696634,0.0928798746066363,"P00533",NA +"Q13480_S500","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480",NA +"Q13480_S648","This study (HEK293F TR) 3min",0.61957213253876,2.81436224299785,0.0150446979398548,0.0967519439370365,"Q13480",NA +"P21333_S2152","This study (HEK293F TR) 3min",0.297910905400229,2.77369797327789,0.0162452281908146,0.101415523104677,"P21333",NA +"Q13480_S634","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480",NA +"Q99808_S273","This study (HEK293F TR) 3min",0.316701505231324,2.6000972878668,0.0225184300074042,0.12369218433211,"Q99808",NA +"Q2TAK8_S235","This study (HEK293F TR) 3min",-0.366101986456474,-2.51882726447567,0.026214385895867,0.13562927998949,"Q2TAK8",NA +"P00533_S1064","This study (HEK293F TR) 3min",0.282900441162347,2.4537860898977,0.0295893548436515,0.145978585967694,"P00533",NA +"P00533_T693","This study (HEK293F TR) 3min",0.265319395778178,2.36535681336266,0.0348552902087417,0.160758176136729,"P00533",NA +"P26583_T179","This study (HEK293F TR) 3min",0.612900233528975,2.29552002315468,0.0396366690395622,0.173481258839896,"P26583",NA +"P00533_S1045","This study (HEK293F TR) 3min",0.252779247922989,2.29337478689872,0.0397930074469168,0.173823155670434,"P00533",NA +"P21333_S1084","This study (HEK293F TR) 3min",0.241630363044717,2.22901811684053,0.0447648057798837,0.186446341824665,"P21333",NA +"P00533_Y1110","This study (HEK293F TR) 3min",0.278752634772754,2.21579894276898,0.0458563654579875,0.189188180668351,"P00533",NA +"O95671_T234","This study (HEK293F TR) 3min",-0.257734607186693,-2.13684728078976,0.0529161454021445,0.205325352168615,"O95671",NA +"P26583_S181","This study (HEK293F TR) 3min",0.564021512901842,2.09109538614759,0.0574611678902723,0.21479593994013,"P26583",NA +"P21333_S977","This study (HEK293F TR) 3min",-0.359691674572552,-2.07538472699108,0.0591041226527984,0.218914181358432,"P21333",NA +"P84103_S5","This study (HEK293F TR) 3min",-0.35624792552462,-2.01759725541692,0.0655303378255179,0.232673487754517,"P84103",NA +"Q9BRP8_S64","This study (HEK293F TR) 3min",0.467693969457141,1.95349706702888,0.0734103020374468,0.248808622047895,"Q9BRP8",NA +"Q13480_S646","This study (HEK293F TR) 3min",-0.42985113345325,-1.86499120050734,0.0857207449212001,0.272445650025557,"Q13480",NA +"Q9BRP8_T68","This study (HEK293F TR) 3min",-0.237984925053956,-1.85562334366792,0.0871279499819063,0.275320723179913,"Q9BRP8",NA +"Q9BRP8_T72","This study (HEK293F TR) 3min",0.335475150315677,1.78086476935779,0.0991269222995888,0.2959298865747,"Q9BRP8",NA +"Q9ULI4_S1059","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4",NA +"Q9ULI4_S879","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4",NA +"Q13480_S253","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480",NA +"Q13480_S274","This study (HEK293F TR) 3min",0.261948487877737,1.58039631404186,0.138869871666238,0.359370971056622,"Q13480",NA +"P84103_S158","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103",NA +"P84103_S160","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103",NA +"Q9ULI4_S1262","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4",NA +"P21333_S1459","This study (HEK293F TR) 3min",0.128046899040161,1.31306557410044,0.212654616503816,0.458170323209666,"P21333",NA +"P84103_S138","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103",NA +"P84103_S140","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103",NA +"Q9BRP8_S126","This study (HEK293F TR) 3min",0.233272080040749,1.241109759416,0.237255274834602,0.48663121029903,"Q9BRP8",NA +"P00533_S1039","This study (HEK293F TR) 3min",0.16484935201419,1.1276657705281,0.280551339632174,0.532780847148919,"P00533",NA +"Q13480_S389","This study (HEK293F TR) 3min",-0.129457523956244,-1.09583987258005,0.293725108851004,0.546812980420113,"Q13480",NA +"Q99808_S266","This study (HEK293F TR) 3min",0.227100806241164,1.06460491489665,0.307102055594803,0.560031662695483,"Q99808",NA +"Q13480_S367","This study (HEK293F TR) 3min",0.210024359757735,1.01578329666847,0.328909048077413,0.581941195531104,"Q13480",NA +"Q13480_T387","This study (HEK293F TR) 3min",0.0993114434855506,0.9174146791236,0.376212760642871,0.624149897397659,"Q13480",NA +"O95671_S223","This study (HEK293F TR) 3min",0.181459919886247,0.897333028578877,0.386425496565956,0.632902171189564,"O95671",NA +"P21333_S2339","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333",NA +"Q9BRP8_T112","This study (HEK293F TR) 3min",0.244564227534452,0.85281612218611,0.409736346758745,0.653017716258668,"Q9BRP8",NA +"Q13480_T369","This study (HEK293F TR) 3min",-0.152031430268384,-0.839937383360218,0.416652207970843,0.658684797446664,"Q13480",NA +"Q13480_S692","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480",NA +"O95671_S228","This study (HEK293F TR) 3min",0.0931621164762965,0.734090729443533,0.476380289409323,0.703636471156852,"O95671",NA +"P00533_S695","This study (HEK293F TR) 3min",-0.0904038576144969,-0.715413907047852,0.487445586040152,0.711230850184818,"P00533",NA +"Q9BRP8_S55","This study (HEK293F TR) 3min",0.113338480966059,0.685957700014308,0.505210471170108,0.724000517658459,"Q9BRP8",NA +"O95671_T249","This study (HEK293F TR) 3min",-0.0727469521861507,-0.668138634089087,0.516140753807215,0.732110650964711,"O95671",NA +"Q9BRP8_S117","This study (HEK293F TR) 3min",-0.127808572587547,-0.60157403398447,0.558164581145576,0.761404260960582,"Q9BRP8",NA +"P00533_S991","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533",NA +"P00533_S995","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533",NA +"Q9BRP8_S131","This study (HEK293F TR) 3min",0.106617881560162,0.394653625598538,0.699721002291539,0.851916261416113,"Q9BRP8",NA +"O95671_S239","This study (HEK293F TR) 3min",0.0381413204037883,0.286819938568845,0.778928903207655,0.894995549342756,"O95671",NA +"P26583_S168","This study (HEK293F TR) 3min",0.076170004265748,0.2002631402396,0.844482219885772,0.929597868544003,"P26583",NA +"O95671_S21","This study (HEK293F TR) 3min",-0.015083524334118,-0.125409435654896,0.902185294547149,0.956937827880533,"O95671",NA +"Q13480_S381","This study (HEK293F TR) 3min",0.0149134770863756,0.100234828527022,0.921740798333989,0.965375681864678,"Q13480",NA +"Q13480_S401","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480",NA +"Q13480_Y659","This study (HEK293F TR) 5min",0.96149464558723,6.38550986706809,2.81957799208171e-05,0.0010275216902753,"Q13480",NA +"Q13480_S418","This study (HEK293F TR) 5min",0.687774707113656,6.05660047576046,4.70479376330071e-05,0.0014777125312701,"Q13480",NA +"Q13480_T638","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 5min",-0.987065216025538,-4.66333174625761,0.0004861886098434,0.0078168799529186,"P84103",NA +"P84103_S148","This study (HEK293F TR) 5min",-0.990302361639888,-4.53955187886192,0.0006059155595428,0.0091351796830444,"P84103",NA +"Q13480_S389","This study (HEK293F TR) 5min",-0.524029613808988,-4.43583754482056,0.0007297187629433,0.0104215666917261,"Q13480",NA +"Q13480_S266","This study (HEK293F TR) 5min",0.35869793972493,4.27803303580211,0.0009706780466285,0.0128419139449146,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 5min",0.51668972589909,3.81800581612068,0.0022642300532271,0.0236302672411981,"P00533",NA +"Q9BRP8_T68","This study (HEK293F TR) 5min",-0.449612949618791,-3.50573585591129,0.0040655454290081,0.0357014073862877,"Q9BRP8",NA +"Q13480_T387","This study (HEK293F TR) 5min",-0.36363813432121,-3.35919961090824,0.005361202267745,0.0432958761861446,"Q13480",NA +"P84103_S152","This study (HEK293F TR) 5min",-0.774282656761766,-3.23685277412668,0.0067582903348887,0.0505800576360409,"P84103",NA +"P21333_S977","This study (HEK293F TR) 5min",-0.554994186821087,-3.20226054791542,0.0072160818400963,0.052954063985109,"P21333",NA +"P26583_T179","This study (HEK293F TR) 5min",0.847039146571802,3.17244996001376,0.0076355062981983,0.0549824951255408,"P26583",NA +"Q13480_S500","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480",NA +"Q13480_S634","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480",NA +"Q99808_S269","This study (HEK293F TR) 5min",0.384654730496244,3.07429740975676,0.0091969808085241,0.061910862760574,"Q99808",NA +"Q13480_S651","This study (HEK293F TR) 5min",0.645065267756046,3.01765035941256,0.0102394897843786,0.0662793053168823,"Q13480",NA +"P26583_S181","This study (HEK293F TR) 5min",0.808191366960536,2.9963488979003,0.0106612983882562,0.0679751505998564,"P26583",NA +"Q13480_S650","This study (HEK293F TR) 5min",0.394430618061241,2.77362150082717,0.0162475724584144,0.0898670516551446,"Q13480",NA +"Q13480_S253","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480",NA +"Q2TAK8_S235","This study (HEK293F TR) 5min",-0.394616259132977,-2.71500901191563,0.0181457103876402,0.0961929294861768,"Q2TAK8",NA +"P00533_S1042","This study (HEK293F TR) 5min",0.258191118952979,2.47294825708657,0.0285537166113875,0.129105723814067,"P00533",NA +"P84103_S5","This study (HEK293F TR) 5min",-0.435111633104363,-2.46423901404772,0.0290200076088459,0.130207319686338,"P84103",NA +"P00533_S991","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533",NA +"P00533_S995","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533",NA +"P84103_S158","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103",NA +"P84103_S160","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103",NA +"Q13480_Y265","This study (HEK293F TR) 5min",0.229185052774778,2.1929749139859,0.0478004054038426,0.178615327818387,"Q13480",NA +"P21333_S2158","This study (HEK293F TR) 5min",0.310716541283021,2.16385231391802,0.0503937596017678,0.184191057780002,"P21333",NA +"P00533_S1045","This study (HEK293F TR) 5min",0.219845820743592,1.99458170099474,0.0682652830941085,0.221518733638866,"P00533",NA +"P21333_S1084","This study (HEK293F TR) 5min",-0.215233156425089,-1.98550628725211,0.0693723677053264,0.22360397557112,"P21333",NA +"O95671_T234","This study (HEK293F TR) 5min",-0.235750583933722,-1.9545803325452,0.0732701934695059,0.231368946394844,"O95671",NA +"Q13480_S419","This study (HEK293F TR) 5min",0.199154802880692,1.92581035959122,0.0770756664195951,0.238815987952407,"Q13480",NA +"Q9ULI4_S1262","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4",NA +"P21333_S1459","This study (HEK293F TR) 5min",-0.178003878770223,-1.82535279668287,0.0918190814556798,0.265336980162086,"P21333",NA +"Q13480_S274","This study (HEK293F TR) 5min",0.239761611121315,1.44653771256631,0.172528113502483,0.386957032025137,"Q13480",NA +"Q13480_S648","This study (HEK293F TR) 5min",0.315398720212013,1.43267620190939,0.176377680597204,0.392416083222465,"Q13480",NA +"O95671_S21","This study (HEK293F TR) 5min",-0.163361915657431,-1.35824527453179,0.198292917102341,0.418851344545411,"O95671",NA +"Q9BRP8_S126","This study (HEK293F TR) 5min",0.245227525123361,1.30471796991252,0.215398448877986,0.438918259879681,"Q9BRP8",NA +"P26583_S168","This study (HEK293F TR) 5min",0.47404113706089,1.24633006950288,0.235397421024411,0.46361035548845,"P26583",NA +"Q9ULI4_S879","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4",NA +"P00533_T693","This study (HEK293F TR) 5min",0.132774787634869,1.18370444668692,0.25845840766427,0.488028626499306,"P00533",NA +"P00533_S1039","This study (HEK293F TR) 5min",0.165469813249521,1.1319100874664,0.278829016682789,0.508639156695712,"P00533",NA +"Q13480_S692","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480",NA +"P00533_Y1110","This study (HEK293F TR) 5min",0.137000797900502,1.08901651600141,0.296609311793398,0.528055753781991,"P00533",NA +"Q9ULI4_S1059","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4",NA +"Q9BRP8_T112","This study (HEK293F TR) 5min",0.279419234387438,0.974358475631675,0.348278971297888,0.578807886905782,"Q9BRP8",NA +"Q13480_S401","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480",NA +"O95671_S228","This study (HEK293F TR) 5min",0.117677154423358,0.927262189792152,0.371273619860154,0.599105890498014,"O95671",NA +"P00533_S1064","This study (HEK293F TR) 5min",-0.100032805064227,-0.867651901112409,0.401865112469493,0.627669861549287,"P00533",NA +"Q13480_S367","This study (HEK293F TR) 5min",0.169059921108289,0.817658695381709,0.428797266488978,0.650364201811877,"Q13480",NA +"Q9BRP8_T72","This study (HEK293F TR) 5min",-0.15158073751136,-0.804664056020953,0.435986978162188,0.656425674076753,"Q9BRP8",NA +"Q9BRP8_S131","This study (HEK293F TR) 5min",0.210047616710483,0.777506101885433,0.451263200521798,0.668654375007106,"Q9BRP8",NA +"O95671_S223","This study (HEK293F TR) 5min",0.13702643262045,0.677606073317719,0.510316286685563,0.713592442937221,"O95671",NA +"O95671_S239","This study (HEK293F TR) 5min",0.0899607512350328,0.676498266700709,0.51099582176578,0.714138859632162,"O95671",NA +"Q13480_S646","This study (HEK293F TR) 5min",-0.114557429494987,-0.497029276727792,0.627758068696753,0.797448499966613,"Q13480",NA +"Q9BRP8_S117","This study (HEK293F TR) 5min",0.0989010053581047,0.465510846055656,0.649537420188096,0.81151883638885,"Q9BRP8",NA +"Q9BRP8_S55","This study (HEK293F TR) 5min",0.0615826623552617,0.372716319028694,0.715575929974441,0.851919681337858,"Q9BRP8",NA +"P21333_S2152","This study (HEK293F TR) 5min",0.0397315284351869,0.369920193917902,0.717606927778133,0.853209688972964,"P21333",NA +"Q13480_S381","This study (HEK293F TR) 5min",0.0516821846361104,0.347360637958466,0.734074214966415,0.863572880631665,"Q13480",NA +"Q9BRP8_S64","This study (HEK293F TR) 5min",-0.0748100203406814,-0.312471754744925,0.759811331094997,0.878046889710519,"Q9BRP8",NA +"P84103_S138","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103",NA +"P84103_S140","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103",NA +"Q99808_S273","This study (HEK293F TR) 5min",-0.0356433470307919,-0.292629395233108,0.774585578182977,0.886125757773408,"Q99808",NA +"Q13480_T369","This study (HEK293F TR) 5min",-0.0517394563116866,-0.285848153070726,0.77965620173143,0.889364863636702,"Q13480",NA +"P21333_S2339","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333",NA +"Q99808_S266","This study (HEK293F TR) 5min",0.0406590944931011,0.190602017443461,0.851884854642904,0.928673627082712,"Q99808",NA +"O95671_T249","This study (HEK293F TR) 5min",0.0191085886093507,0.175501322174325,0.863484603973436,0.934855783819616,"O95671",NA +"P00533_S695","This study (HEK293F TR) 5min",-0.0168234424441156,-0.133132866301596,0.896198489905016,0.95215300248871,"P00533",NA +"Q13480_S418","This study (HEK293F TR) 7min",1.1037995737909,9.72014957023043,3.34652817160609e-07,4.32857234845081e-05,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 7min",-1.36644568044178,-6.45569250915216,2.53263208550614e-05,0.0007680864474193,"P84103",NA +"P84103_S148","This study (HEK293F TR) 7min",-1.37579563187301,-6.30665530803837,3.18349312216953e-05,0.0009070452183221,"P84103",NA +"Q13480_Y659","This study (HEK293F TR) 7min",0.792176512639632,5.26102871309338,0.0001727592939515,0.0030250736236118,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 7min",0.697451166751218,5.15371697488788,0.0002072876990016,0.0034426781998778,"P00533",NA +"Q13480_S253","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480",NA +"P84103_S152","This study (HEK293F TR) 7min",-1.21143888805105,-5.06436414561133,0.0002415390204995,0.0038620414415131,"P84103",NA +"Q13480_T638","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480",NA +"Q13480_S419","This study (HEK293F TR) 7min",0.483808265698794,4.67838564102704,0.0004734069385915,0.0063385423968833,"Q13480",NA +"Q13480_S266","This study (HEK293F TR) 7min",0.375216829491048,4.47504659040579,0.0006800859268684,0.0082694627623141,"Q13480",NA +"P00533_S1042","This study (HEK293F TR) 7min",0.442948339454276,4.24254842101028,0.0010354069477496,0.011206423562801,"P00533",NA +"P00533_S1045","This study (HEK293F TR) 7min",0.45594435889104,4.13661843486446,0.0012564974840463,0.0127912843728693,"P00533",NA +"Q13480_S634","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480",NA +"P21333_S977","This study (HEK293F TR) 7min",-0.600796400495767,-3.46653470670927,0.0043774091151049,0.0307596835611823,"P21333",NA +"Q13480_S401","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480",NA +"Q9BRP8_T68","This study (HEK293F TR) 7min",-0.401600997432656,-3.13137559241367,0.008253757372613,0.0478056726253567,"Q9BRP8",NA +"Q13480_S389","This study (HEK293F TR) 7min",-0.355636325653229,-3.01041186235259,0.0103809274155062,0.0557446080659887,"Q13480",NA +"Q99808_S269","This study (HEK293F TR) 7min",0.374719370584309,2.99489047979945,0.0106908026195154,0.0568321777262176,"Q99808",NA +"P00533_S1039","This study (HEK293F TR) 7min",0.397147945491421,2.71672371467789,0.0180872077875341,0.0819442912050481,"P00533",NA +"Q13480_S500","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480",NA +"P21333_S2158","This study (HEK293F TR) 7min",0.361187229992353,2.51533381566802,0.0263857888347521,0.105472616532176,"P21333",NA +"Q13480_S651","This study (HEK293F TR) 7min",0.505287784467303,2.3637637005457,0.0349579424770295,0.127069626686521,"Q13480",NA +"P26583_T179","This study (HEK293F TR) 7min",0.583606449226995,2.18580482851037,0.0484269814361419,0.15820527972746,"P26583",NA +"P26583_S181","This study (HEK293F TR) 7min",0.576724837670714,2.1381926390099,0.0527877313539815,0.166799610776491,"P26583",NA +"Q13480_S650","This study (HEK293F TR) 7min",0.302522365950496,2.12732607525697,0.0538333383565838,0.168784997987855,"Q13480",NA +"P84103_S158","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103",NA +"P84103_S160","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103",NA +"Q13480_Y265","This study (HEK293F TR) 7min",0.220715253501599,2.11193098416719,0.0553479061411364,0.172044332412882,"Q13480",NA +"P00533_T693","This study (HEK293F TR) 7min",0.230349261636213,2.05359353343247,0.0614553946063972,0.184228039858047,"P00533",NA +"P84103_S5","This study (HEK293F TR) 7min",-0.345894897394597,-1.95896325464448,0.0727058111844041,0.206215027951489,"P84103",NA +"P00533_S991","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533",NA +"P00533_S995","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533",NA +"Q9ULI4_S1059","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4",NA +"O95671_T234","This study (HEK293F TR) 7min",-0.216271417990969,-1.79308086132101,0.0970699753118389,0.248816820353874,"O95671",NA +"Q2TAK8_S235","This study (HEK293F TR) 7min",-0.24611393744777,-1.6932945428981,0.115046552384683,0.277611651619465,"Q2TAK8",NA +"Q13480_T387","This study (HEK293F TR) 7min",-0.176926346528642,-1.63440205612056,0.126985038563461,0.29511123705805,"Q13480",NA +"Q13480_S646","This study (HEK293F TR) 7min",-0.373749564385765,-1.62158383339173,0.129722708424391,0.29928964332467,"Q13480",NA +"Q13480_S692","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480",NA +"P21333_S2152","This study (HEK293F TR) 7min",0.153280640767058,1.42711862819238,0.177941170624865,0.364760549297608,"P21333",NA +"Q9ULI4_S1262","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4",NA +"Q13480_S274","This study (HEK293F TR) 7min",0.209465361581399,1.26375337397328,0.229280255517313,0.427468285649164,"Q13480",NA +"P00533_Y1110","This study (HEK293F TR) 7min",0.152405669772214,1.21146952468655,0.248025052922553,0.448616987841922,"P00533",NA +"Q9BRP8_S126","This study (HEK293F TR) 7min",0.221764565592352,1.17988473631837,0.25992012882842,0.462220741585782,"Q9BRP8",NA +"P26583_S168","This study (HEK293F TR) 7min",0.442062866036459,1.16225407349213,0.266750341608761,0.469906075716093,"P26583",NA +"Q13480_S648","This study (HEK293F TR) 7min",0.231929312793405,1.05352236921237,0.311955791963061,0.517674603234076,"Q13480",NA +"O95671_T249","This study (HEK293F TR) 7min",-0.11309753638146,-1.03873538623842,0.318520007128247,0.524373265354362,"O95671",NA +"Q9BRP8_T112","This study (HEK293F TR) 7min",0.291082861844382,1.01503052991669,0.329253915581703,0.535177255873372,"Q9BRP8",NA +"P21333_S1084","This study (HEK293F TR) 7min",-0.108606213194125,-1.00188243629941,0.335319941974884,0.541342894515348,"P21333",NA +"Q99808_S273","This study (HEK293F TR) 7min",-0.119598613714306,-0.981896284086366,0.344694853164643,0.550560650271822,"Q99808",NA +"P00533_S1064","This study (HEK293F TR) 7min",-0.110747413479764,-0.960586917334802,0.354895645676274,0.560282061897437,"P00533",NA +"Q9BRP8_S131","This study (HEK293F TR) 7min",0.235992512154962,0.873542966462983,0.398767990853891,0.601557072923401,"Q9BRP8",NA +"P00533_S695","This study (HEK293F TR) 7min",-0.0890833414201246,-0.704963958617947,0.493704257750478,0.682740091089987,"P00533",NA +"O95671_S223","This study (HEK293F TR) 7min",0.139082224187964,0.687772118109102,0.504105223441676,0.690868238103636,"O95671",NA +"Q9ULI4_S879","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4",NA +"Q9BRP8_S55","This study (HEK293F TR) 7min",0.0950606833069915,0.575335112375293,0.575231542512794,0.744759881746609,"Q9BRP8",NA +"Q9BRP8_T72","This study (HEK293F TR) 7min",-0.0651972218391101,-0.346098467573591,0.734999697278246,0.852100231727844,"Q9BRP8",NA +"O95671_S239","This study (HEK293F TR) 7min",0.0412077495785574,0.30987926158708,0.761736215153427,0.868171944370563,"O95671",NA +"Q9BRP8_S117","This study (HEK293F TR) 7min",0.057739839616218,0.271771975355971,0.790214991764914,0.8855885516059,"Q9BRP8",NA +"O95671_S228","This study (HEK293F TR) 7min",0.0338566919163412,0.266781011482661,0.793969340478379,0.887538324170831,"O95671",NA +"P21333_S1459","This study (HEK293F TR) 7min",-0.0239298948281394,-0.245390722666535,0.810119427622841,0.896733089700785,"P21333",NA +"Q99808_S266","This study (HEK293F TR) 7min",-0.0506435705627694,-0.237407321538899,0.816170853856404,0.900644491598715,"Q99808",NA +"Q13480_S381","This study (HEK293F TR) 7min",0.0326430791622023,0.219397087846569,0.829867354092036,0.909416972496865,"Q13480",NA +"O95671_S21","This study (HEK293F TR) 7min",0.0259075469099361,0.215403957669805,0.832912125216958,0.911191534998678,"O95671",NA +"Q13480_T369","This study (HEK293F TR) 7min",0.0283255991048836,0.156492177652125,0.878133467775698,0.93558481852733,"Q13480",NA +"Q13480_S367","This study (HEK293F TR) 7min",0.0251815521598963,0.121790634656447,0.904992577603532,0.950267622743852,"Q13480",NA +"P21333_S2339","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333",NA +"Q9BRP8_S64","This study (HEK293F TR) 7min",0.0154904149712216,0.0647014547749363,0.949430555085256,0.974015212026464,"Q9BRP8",NA +"P84103_S138","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103",NA +"P84103_S140","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103",NA +"Q13480_S418","This study (HEK293F TR) 9min",1.34281990556529,11.8249822140717,3.58418773652344e-08,1.07838155782486e-05,"Q13480",NA +"P00533_S1042","This study (HEK293F TR) 9min",0.86346067692395,8.27020536074574,1.96855408160295e-06,0.000110505533616,"P00533",NA +"Q13480_S401","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 9min",1.02430571177988,7.56896251082995,5.03405987618794e-06,0.0002175092963841,"P00533",NA +"P00533_S1045","This study (HEK293F TR) 9min",0.786826367251601,7.13859134857336,9.22449929705528e-06,0.0003262827733437,"P00533",NA +"Q13480_S253","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480",NA +"Q13480_S419","This study (HEK293F TR) 9min",0.64730209276652,6.25935733411177,3.42533870901217e-05,0.0008333054567232,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 9min",-1.19256729892051,-5.63421428930265,9.28257766047161e-05,0.0017109833003386,"P84103",NA +"P84103_S148","This study (HEK293F TR) 9min",-1.20064152884553,-5.5037478645258,0.0001150855336849,0.0019995301016256,"P84103",NA +"P00533_S1039","This study (HEK293F TR) 9min",0.76105132314717,5.20603518450171,0.0001896302605604,0.0028711033896398,"P00533",NA +"Q13480_S266","This study (HEK293F TR) 9min",0.414276614970547,4.94089552385877,0.0002989062372522,0.0039808179392007,"Q13480",NA +"P84103_S152","This study (HEK293F TR) 9min",-1.10782416697773,-4.63120760462771,0.0005146794136814,0.0058854753903324,"P84103",NA +"P00533_S991","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533",NA +"P00533_S995","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533",NA +"Q9BRP8_T68","This study (HEK293F TR) 9min",-0.493333938082928,-3.84663848570558,0.0021466977465303,0.0164078722359052,"Q9BRP8",NA +"P84103_S158","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103",NA +"P84103_S160","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103",NA +"Q13480_Y659","This study (HEK293F TR) 9min",0.541049789789273,3.59323766089666,0.0034482903376149,0.0230117649619874,"Q13480",NA +"P21333_S977","This study (HEK293F TR) 9min",-0.574754991480809,-3.31627840010112,0.0058146542047515,0.033288372482313,"P21333",NA +"Q2TAK8_S235","This study (HEK293F TR) 9min",-0.429348140146745,-2.95396867911318,0.01155260565003,0.0540068515875285,"Q2TAK8",NA +"O95671_S21","This study (HEK293F TR) 9min",-0.333699201335193,-2.7744860942927,0.0162210876768497,0.0681833052759804,"O95671",NA +"Q13480_T638","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480",NA +"P21333_S2158","This study (HEK293F TR) 9min",0.360885642804305,2.51323354082584,0.0264893586038732,0.0953713550960174,"P21333",NA +"P26583_T179","This study (HEK293F TR) 9min",0.627009335300997,2.34836341242852,0.0359652825163965,0.117471035626303,"P26583",NA +"P00533_T693","This study (HEK293F TR) 9min",0.252207061284317,2.24845865126947,0.0432040696201188,0.133748566865269,"P00533",NA +"Q9BRP8_T72","This study (HEK293F TR) 9min",-0.41749554561012,-2.21626879916813,0.0458171403347397,0.13909023711161,"Q9BRP8",NA +"P26583_S181","This study (HEK293F TR) 9min",0.591827691734299,2.19418608558526,0.0476953210305215,0.143008712308463,"P26583",NA +"P21333_S1084","This study (HEK293F TR) 9min",-0.236450193628468,-2.18123152523993,0.0488306618067355,0.14524154220171,"P21333",NA +"Q9ULI4_S1262","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4",NA +"Q13480_S651","This study (HEK293F TR) 9min",0.404909330680219,1.89418784165381,0.0814661840931408,0.205059731760845,"Q13480",NA +"P84103_S5","This study (HEK293F TR) 9min",-0.334045621896479,-1.89185531096039,0.0817988906208661,0.205645420079757,"P84103",NA +"O95671_S228","This study (HEK293F TR) 9min",0.224438688352642,1.76851242414679,0.101246401427713,0.237318948536775,"O95671",NA +"Q13480_S634","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480",NA +"Q9BRP8_S64","This study (HEK293F TR) 9min",-0.411134776057704,-1.71725664992972,0.110479431688592,0.251065564307567,"Q9BRP8",NA +"Q99808_S273","This study (HEK293F TR) 9min",-0.207065890940088,-1.69999653474901,0.11375265733017,0.255981090465753,"Q99808",NA +"Q13480_S274","This study (HEK293F TR) 9min",0.28121679147228,1.69664648301734,0.114397807341695,0.257034333940225,"Q13480",NA +"P00533_S1064","This study (HEK293F TR) 9min",-0.187290803353122,-1.62449929786403,0.129095554115199,0.278115697114315,"P00533",NA +"Q99808_S269","This study (HEK293F TR) 9min",0.190859872397834,1.52541998010056,0.151943608873438,0.309220191090377,"Q99808",NA +"Q13480_S692","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480",NA +"O95671_T249","This study (HEK293F TR) 9min",0.162366286784415,1.49124033123286,0.160591393142969,0.320549613465477,"O95671",NA +"Q13480_S650","This study (HEK293F TR) 9min",0.211691794627006,1.48860886107728,0.161274175622051,0.321421425305714,"Q13480",NA +"Q13480_S500","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480",NA +"Q13480_S367","This study (HEK293F TR) 9min",0.274001878414593,1.32521071208301,0.208713224518601,0.380188151115672,"Q13480",NA +"Q9BRP8_S126","This study (HEK293F TR) 9min",0.217755930625859,1.15855704044504,0.268200033374105,0.44813214631777,"Q9BRP8",NA +"P84103_S138","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103",NA +"P84103_S140","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103",NA +"O95671_S223","This study (HEK293F TR) 9min",0.218493149069754,1.08046514790376,0.300253903449531,0.481974962032279,"O95671",NA +"P00533_Y1110","This study (HEK293F TR) 9min",0.130269181438862,1.03550703563009,0.319966553711467,0.502006666447852,"P00533",NA +"P26583_S168","This study (HEK293F TR) 9min",0.373270721538564,0.981388508185086,0.344935460546253,0.526515821002716,"P26583",NA +"Q99808_S266","This study (HEK293F TR) 9min",-0.19472892269923,-0.912851749006924,0.378516732260439,0.557959942639866,"Q99808",NA +"Q13480_S648","This study (HEK293F TR) 9min",0.19868154050242,0.902496733801499,0.383781433335196,0.562507173927707,"Q13480",NA +"Q13480_S381","This study (HEK293F TR) 9min",0.124994378467113,0.840098524303129,0.416565200083806,0.593496857555951,"Q13480",NA +"Q9ULI4_S1059","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4",NA +"P00533_S695","This study (HEK293F TR) 9min",0.0942230517222206,0.74563722550437,0.469617348896385,0.640013501811697,"P00533",NA +"O95671_T234","This study (HEK293F TR) 9min",-0.0872524560456788,-0.723399839387433,0.482695238841633,0.650843863100497,"O95671",NA +"Q9ULI4_S879","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4",NA +"P21333_S1459","This study (HEK293F TR) 9min",0.0582392146534189,0.597217959960633,0.560978743612849,0.713614018048643,"P21333",NA +"Q13480_S646","This study (HEK293F TR) 9min",-0.134850694893446,-0.585075482616889,0.56886369623831,0.719950789050142,"Q13480",NA +"O95671_S239","This study (HEK293F TR) 9min",0.0650025565003282,0.488814468530832,0.633400661867893,0.768664261154634,"O95671",NA +"Q13480_S389","This study (HEK293F TR) 9min",-0.04181148155903,-0.353928355987382,0.729265489090173,0.836494724272797,"Q13480",NA +"Q9BRP8_T112","This study (HEK293F TR) 9min",-0.0818735826436469,-0.285500099354485,0.779916742989811,0.870114664215326,"Q9BRP8",NA +"Q9BRP8_S55","This study (HEK293F TR) 9min",-0.0407263748641497,-0.246487955314125,0.809288710162003,0.889625328669485,"Q9BRP8",NA +"Q9BRP8_S117","This study (HEK293F TR) 9min",-0.0407225172113818,-0.191674223855935,0.851062561103756,0.915120834024333,"Q9BRP8",NA +"Q13480_Y265","This study (HEK293F TR) 9min",0.0143109870543085,0.136935787148897,0.893253075752858,0.939962605124081,"Q13480",NA +"P21333_S2339","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333",NA +"P21333_S2152","This study (HEK293F TR) 9min",-0.0142071497466957,-0.132275595636638,0.896862681473085,0.941935040992472,"P21333",NA +"Q9BRP8_S131","This study (HEK293F TR) 9min",-0.031191359515386,-0.11545702221769,0.909909062699392,0.949129944207173,"Q9BRP8",NA +"Q13480_T387","This study (HEK293F TR) 9min",0.0105187450499038,0.0971695786109935,0.924125773034881,0.957486343559405,"Q13480",NA +"Q13480_T369","This study (HEK293F TR) 9min",0.0013739350822774,0.0075906635613288,0.99406287219463,0.996604381840525,"Q13480",NA +"Q13480_S418","This study (HEK293F TR) 12min",1.22802565942112,10.8140946681642,1.00231715879494e-07,2.3110904470289e-05,"Q13480",NA +"Q13480_S419","This study (HEK293F TR) 12min",0.738599752638109,7.14219810241838,9.1769089885754e-06,0.0003545937511537,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 12min",-1.4276699947204,-6.74494319267636,1.63875691221844e-05,0.000521617557938,"P84103",NA +"P84103_S148","This study (HEK293F TR) 12min",-1.43263528491908,-6.56720861354789,2.13848044893434e-05,0.0006259210711296,"P84103",NA +"Q13480_S401","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480",NA +"Q13480_S253","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480",NA +"P00533_S1042","This study (HEK293F TR) 12min",0.598529044819585,5.73269663265156,7.90474886446553e-05,0.0015894214475115,"P00533",NA +"P00533_S1045","This study (HEK293F TR) 12min",0.612488360936476,5.55688560584916,0.0001054081747554,0.0019436306304023,"P00533",NA +"P84103_S152","This study (HEK293F TR) 12min",-1.262820964745,-5.27916453670207,0.0001675468599323,0.0026824350128627,"P84103",NA +"Q13480_S266","This study (HEK293F TR) 12min",0.439881933079729,5.24627892485434,0.000177123839181,0.0027904922084,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 12min",0.635730680478977,4.69764215135396,0.0004575649887099,0.0053948370582447,"P00533",NA +"Q99808_S269","This study (HEK293F TR) 12min",0.56759342706096,4.53640853540863,0.0006093276000663,0.0065985953883397,"Q99808",NA +"Q9BRP8_T68","This study (HEK293F TR) 12min",-0.495689206430953,-3.86500305617661,0.0020746221048463,0.01539369601796,"Q9BRP8",NA +"P84103_S158","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103",NA +"P84103_S160","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103",NA +"Q13480_T638","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480",NA +"Q13480_Y659","This study (HEK293F TR) 12min",0.452361055616073,3.00423512223471,0.0105031563119427,0.0466058670773552,"Q13480",NA +"P26583_S168","This study (HEK293F TR) 12min",0.994261219026512,2.61407198096008,0.0219361667939551,0.0771707028457242,"P26583",NA +"O95671_S223","This study (HEK293F TR) 12min",0.522119409154012,2.58191996882663,0.0232983537076516,0.0803923543354305,"O95671",NA +"O95671_S21","This study (HEK293F TR) 12min",-0.308407207386958,-2.56420004857986,0.0240839078599614,0.0821266251232947,"O95671",NA +"Q13480_T387","This study (HEK293F TR) 12min",0.261440202541962,2.41512026315417,0.0317903458648704,0.0996462352947721,"Q13480",NA +"P00533_S1039","This study (HEK293F TR) 12min",0.316931537520061,2.16799667147888,0.0500167990173577,0.136134310437061,"P00533",NA +"P21333_S977","This study (HEK293F TR) 12min",-0.371776330669387,-2.14511197526313,0.0521318833876477,0.139968632168718,"P21333",NA +"Q99808_S266","This study (HEK293F TR) 12min",0.457418491059631,2.14428993805316,0.0522093982680528,0.140123379860785,"Q99808",NA +"Q9BRP8_T72","This study (HEK293F TR) 12min",-0.402712129742984,-2.13779125928544,0.0528260123391726,0.141263634489955,"Q9BRP8",NA +"Q9BRP8_S126","This study (HEK293F TR) 12min",0.383407056161037,2.03989366900358,0.0629777730243479,0.159392298642819,"Q9BRP8",NA +"Q13480_S500","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480",NA +"Q13480_S389","This study (HEK293F TR) 12min",0.228785992039377,1.93664149214897,0.0756222666353915,0.180882713781091,"Q13480",NA +"O95671_S228","This study (HEK293F TR) 12min",0.237468371098316,1.87118258314456,0.0848020377383626,0.195212827064335,"O95671",NA +"Q9ULI4_S1262","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4",NA +"P00533_S991","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533",NA +"P00533_S995","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533",NA +"P26583_S181","This study (HEK293F TR) 12min",0.463931752115329,1.72001514861467,0.109964110250647,0.233756638467073,"P26583",NA +"Q2TAK8_S235","This study (HEK293F TR) 12min",-0.244786646125297,-1.68416261328661,0.116830470117705,0.243571030715184,"Q2TAK8",NA +"Q9ULI4_S879","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4",NA +"Q9BRP8_S64","This study (HEK293F TR) 12min",-0.381948637154169,-1.59534993214131,0.135486241778974,0.269611938542504,"Q9BRP8",NA +"Q9BRP8_S55","This study (HEK293F TR) 12min",0.263269714953562,1.59338546461594,0.135926637898369,0.270281204667307,"Q9BRP8",NA +"P21333_S2158","This study (HEK293F TR) 12min",0.217817818547985,1.51689893538148,0.15406148739414,0.293802889869716,"P21333",NA +"Q13480_S634","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480",NA +"P00533_Y1110","This study (HEK293F TR) 12min",0.182232933285991,1.44856582698123,0.171970827810516,0.317727807565592,"P00533",NA +"P26583_T179","This study (HEK293F TR) 12min",0.37595083276565,1.40806385301275,0.183389876434761,0.3317068329613,"P26583",NA +"P00533_T693","This study (HEK293F TR) 12min",0.142229130541327,1.26799113950133,0.227811765275613,0.384475696343489,"P00533",NA +"Q9ULI4_S1059","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4",NA +"P84103_S138","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103",NA +"P84103_S140","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103",NA +"Q9BRP8_S131","This study (HEK293F TR) 12min",0.308646201724812,1.14247573442154,0.274576623538234,0.436863068237419,"Q9BRP8",NA +"P21333_S2339","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333",NA +"Q13480_Y265","This study (HEK293F TR) 12min",0.114953294053219,1.09993949032307,0.292002403574503,0.455684267966104,"Q13480",NA +"Q9BRP8_S117","This study (HEK293F TR) 12min",0.215841379723052,1.01593004969857,0.328841846262963,0.493988590134667,"Q9BRP8",NA +"Q13480_S367","This study (HEK293F TR) 12min",0.191708380502693,0.92719802108015,0.371305657642422,0.53649590234407,"Q13480",NA +"Q13480_S274","This study (HEK293F TR) 12min",0.149512763261884,0.902045367299778,0.384012057448678,0.54881259842318,"Q13480",NA +"O95671_S239","This study (HEK293F TR) 12min",0.108603373215278,0.81668941987864,0.429330865409643,0.59052441578603,"O95671",NA +"P21333_S1084","This study (HEK293F TR) 12min",-0.0864207147878026,-0.797223231819882,0.440138816950366,0.599946394112229,"P21333",NA +"P21333_S2152","This study (HEK293F TR) 12min",0.0816936932427836,0.760608716463993,0.460937618461087,0.618414402842063,"P21333",NA +"Q13480_S648","This study (HEK293F TR) 12min",-0.164182265564548,-0.745786236836282,0.469530461939005,0.626434176494061,"Q13480",NA +"P84103_S5","This study (HEK293F TR) 12min",-0.124327407381937,-0.704123779913945,0.49420954817595,0.647421593363933,"P84103",NA +"Q13480_S651","This study (HEK293F TR) 12min",0.147218162711148,0.688694561346873,0.503543869489854,0.655017614046599,"Q13480",NA +"Q13480_S646","This study (HEK293F TR) 12min",-0.12629115776509,-0.547938296781049,0.593343039718602,0.730381080424971,"Q13480",NA +"P00533_S695","This study (HEK293F TR) 12min",-0.0667963474886992,-0.528595097536559,0.6063050173937,0.74035260643068,"P00533",NA +"Q13480_S381","This study (HEK293F TR) 12min",0.078263978246408,0.526019277324531,0.608041779725835,0.74170244337623,"Q13480",NA +"P00533_S1064","This study (HEK293F TR) 12min",-0.0474659432084152,-0.411704098834701,0.687498272416577,0.800511463689956,"P00533",NA +"P21333_S1459","This study (HEK293F TR) 12min",0.0375077397661947,0.384625650589643,0.706950920127375,0.814587470561265,"P21333",NA +"Q13480_S650","This study (HEK293F TR) 12min",0.0409547331526969,0.287992167016107,0.778051879597256,0.863562856129909,"Q13480",NA +"O95671_T249","This study (HEK293F TR) 12min",0.0298440893599583,0.274100680528459,0.788465134956283,0.870691608475478,"O95671",NA +"O95671_T234","This study (HEK293F TR) 12min",-0.0237811195920656,-0.197166462389864,0.846853342120868,0.908436985526979,"O95671",NA +"Q13480_T369","This study (HEK293F TR) 12min",-0.0332424931421329,-0.183656844225451,0.85721556604946,0.914681326521504,"Q13480",NA +"Q99808_S273","This study (HEK293F TR) 12min",-0.0221335212303035,-0.18171466687479,0.858707590795976,0.915828310495618,"Q99808",NA +"Q9BRP8_T112","This study (HEK293F TR) 12min",0.0236583320625598,0.0824986025568328,0.935550994272012,0.963302746964072,"Q9BRP8",NA +"Q13480_S692","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480",NA +"Q13480_S418","This study (HEK293F TR) 15min",1.19749459863645,10.5452356430193,1.33532459201629e-07,2.7226827001595e-05,"Q13480",NA +"P84103_S150","This study (HEK293F TR) 15min",-1.56768599675222,-7.40644058581533,6.31053103970649e-06,0.0002896563098532,"P84103",NA +"P84103_S148","This study (HEK293F TR) 15min",-1.58278198443578,-7.25548197156277,7.80740041793263e-06,0.0003358679675867,"P84103",NA +"P00533_S1042","This study (HEK293F TR) 15min",0.731570451998518,7.00696399450998,1.1153725624496e-05,0.0004307639349707,"P00533",NA +"Q13480_S419","This study (HEK293F TR) 15min",0.701683685031043,6.78522280277849,1.5437342018886e-05,0.0005452996245897,"Q13480",NA +"P00533_S1045","This study (HEK293F TR) 15min",0.725827613903997,6.58517169838804,2.08132253096596e-05,0.0006740087464202,"P00533",NA +"P84103_S152","This study (HEK293F TR) 15min",-1.41677309205398,-5.92275427232507,5.8195448312691e-05,0.0013745993327396,"P84103",NA +"Q13480_S253","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480",NA +"Q13480_S256","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480",NA +"P00533_T1041","This study (HEK293F TR) 15min",0.723730501484713,5.34790441045508,0.0001492403084544,0.0026489081079376,"P00533",NA +"Q13480_S266","This study (HEK293F TR) 15min",0.420109140926637,5.01045750333784,0.0002650230072609,0.0039448055044581,"Q13480",NA +"Q13480_S401","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480",NA +"Q13480_S402","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480",NA +"Q99808_S269","This study (HEK293F TR) 15min",0.42514576944972,3.39791619383473,0.0049828685300707,0.0317251202424877,"Q99808",NA +"P00533_S1039","This study (HEK293F TR) 15min",0.46835256947163,3.20380489628238,0.0071949947049766,0.0414213771704189,"P00533",NA +"Q13480_T638","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480",NA +"Q13480_Y627","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480",NA +"P84103_S158","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103",NA +"P84103_S160","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103",NA +"P00533_S991","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533",NA +"P00533_S995","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533",NA +"P21333_S977","This study (HEK293F TR) 15min",-0.493961862021035,-2.85011018220758,0.0140618674822364,0.0659996886879095,"P21333",NA +"P00533_T693","This study (HEK293F TR) 15min",0.302970924035009,2.70102506948318,0.0186297949781265,0.0796232112261325,"P00533",NA +"Q13480_Y659","This study (HEK293F TR) 15min",0.40142027081858,2.66592550662378,0.0199012507037629,0.0834185558368584,"Q13480",NA +"Q13480_T387","This study (HEK293F TR) 15min",0.283010041859999,2.61437713146848,0.0219236176140641,0.0891084896153846,"Q13480",NA +"Q9BRP8_T68","This study (HEK293F TR) 15min",-0.324276876289879,-2.52846158771942,0.0257472549046568,0.0994401063525738,"Q9BRP8",NA +"Q13480_S500","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480",NA +"Q13480_T503","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480",NA +"P26583_T179","This study (HEK293F TR) 15min",0.594304072262581,2.22587106855234,0.0450224204893746,0.145255740434629,"P26583",NA +"P21333_S2152","This study (HEK293F TR) 15min",0.231500547426709,2.15538467229837,0.0511722669691234,0.158296857191239,"P21333",NA +"P21333_S1459","This study (HEK293F TR) 15min",0.20735146219727,2.1262995729809,0.0539331068001716,0.164102366013498,"P21333",NA +"P26583_S181","This study (HEK293F TR) 15min",0.56274483949035,2.0863621520079,0.0579516156115763,0.171972969826382,"P26583",NA +"Q13480_S634","This study (HEK293F TR) 15min",-0.251780324857542,-1.98330492790206,0.0696433861229981,0.194642514951407,"Q13480",NA +"Q13480_S637","This study (HEK293F TR) 15min",-0.251780324857542,-1.98330492790206,0.0696433861229981,0.194642514951407,"Q13480",NA +"O95671_T234","This study (HEK293F TR) 15min",-0.23101300138484,-1.91530159346704,0.0785101662183716,0.210554783116235,"O95671",NA +"Q9ULI4_S1262","This study (HEK293F TR) 15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4",NA +"Q9ULI4_S1267","This study (HEK293F TR) 15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4",NA +"Q9BRP8_S126","This study (HEK293F TR) 15min",0.345230442598623,1.83677734378589,0.0900224335815617,0.229808936841792,"Q9BRP8",NA +"P21333_S2158","This study (HEK293F TR) 15min",0.261661206390812,1.82222743782285,0.0923161811418474,0.233431833428747,"P21333",NA +"Q9BRP8_T112","This study (HEK293F TR) 15min",0.515214106322935,1.79659511400951,0.0964853757143596,0.240084613911934,"Q9BRP8",NA +"O95671_S239","This study (HEK293F TR) 15min",0.231370741987128,1.73989104993818,0.106313659496786,0.256044264962412,"O95671",NA +"Q13480_S274","This study (HEK293F TR) 15min",0.268740390601147,1.62137344705138,0.129768067771291,0.292354386267867,"Q13480",NA +"P84103_S5","This study (HEK293F TR) 15min",-0.275797441045292,-1.56196884314357,0.143139766362122,0.311761534736955,"P84103",NA +"Q13480_Y265","This study (HEK293F TR) 15min",0.160439380588173,1.53517662947704,0.14954922262543,0.320779311946034,"Q13480",NA +"Q9BRP8_S55","This study (HEK293F TR) 15min",0.241586899117331,1.4621547091472,0.168275760731246,0.346375325323939,"Q9BRP8",NA +"Q13480_S381","This study (HEK293F TR) 15min",0.210201808893093,1.41278537181092,0.18202697812748,0.364557057630292,"Q13480",NA +"Q99808_S273","This study (HEK293F TR) 15min",0.169516093914348,1.39171531791279,0.188174667079203,0.372163317074396,"Q99808",NA +"Q13480_S692","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480",NA +"Q13480_T684","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480",NA +"Q9ULI4_S1059","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4",NA +"Q9ULI4_S1062","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4",NA +"Q9BRP8_S131","This study (HEK293F TR) 15min",0.331919525527716,1.22862358770976,0.241746138067417,0.436189698711396,"Q9BRP8",NA +"P26583_S168","This study (HEK293F TR) 15min",0.453378525882943,1.19200475549071,0.255304123215189,0.451992083233722,"P26583",NA +"Q99808_S266","This study (HEK293F TR) 15min",0.250295915548659,1.17333912759733,0.26243991816857,0.460586394412772,"Q99808",NA +"Q13480_S367","This study (HEK293F TR) 15min",0.228413165524687,1.10472079784831,0.290002886037876,0.490131803250929,"Q13480",NA +"Q13480_S651","This study (HEK293F TR) 15min",0.214935586237271,1.00548034668756,0.333652019434038,0.534074858721006,"Q13480",NA +"Q13480_S389","This study (HEK293F TR) 15min",0.116999989141352,0.990388579004969,0.340688634230938,0.541089932556352,"Q13480",NA +"Q13480_T369","This study (HEK293F TR) 15min",0.177355166169711,0.979844982942209,0.345667591618793,0.546010499175559,"Q13480",NA +"Q13480_S646","This study (HEK293F TR) 15min",-0.215355438843879,-0.934360682496404,0.3677414175638,0.567613387351433,"Q13480",NA +"Q2TAK8_S235","This study (HEK293F TR) 15min",-0.127054642270805,-0.874151763358307,0.398448849028704,0.596687577898067,"Q2TAK8",NA +"P00533_S1064","This study (HEK293F TR) 15min",0.0933249044970843,0.809469761005293,0.433319005715053,0.626870053319967,"P00533",NA +"P00533_Y1110","This study (HEK293F TR) 15min",0.0967046875601518,0.768703566268617,0.456286824500938,0.646056399640043,"P00533",NA +"Q9ULI4_S879","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4",NA +"Q9ULI4_S885","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4",NA +"Q9BRP8_S117","This study (HEK293F TR) 15min",0.0913532575775306,0.429984832518911,0.674494851065323,0.808414084289545,"Q9BRP8",NA +"O95671_T249","This study (HEK293F TR) 15min",0.0319545032353651,0.293483610008018,0.773947605181916,0.874876182642409,"O95671",NA +"O95671_S228","This study (HEK293F TR) 15min",0.0369635109008434,0.29126185306125,0.775607287266316,0.875862006535801,"O95671",NA +"P21333_S1084","This study (HEK293F TR) 15min",0.0289944901738117,0.267471534088705,0.793449587031667,0.887214175708526,"P21333",NA +"Q13480_S648","This study (HEK293F TR) 15min",0.0520249411043067,0.236319586128236,0.816996322222741,0.900709375682836,"Q13480",NA +"O95671_S223","This study (HEK293F TR) 15min",0.0445685528352051,0.220394864717579,0.829106992757838,0.908049038850524,"O95671",NA +"P21333_S2339","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333",NA +"P21333_T2336","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333",NA +"P84103_S138","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103",NA +"P84103_S140","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103",NA +"P00533_S695","This study (HEK293F TR) 15min",-0.0245724730021255,-0.194455075039402,0.848930728584608,0.918916067578158,"P00533",NA +"Q9BRP8_S64","This study (HEK293F TR) 15min",0.0447796224341097,0.187038676571412,0.854618936445188,0.922321519236564,"Q9BRP8",NA +"Q9BRP8_T72","This study (HEK293F TR) 15min",-0.0304428670675775,-0.161605500102992,0.874188175237224,0.934059364936993,"Q9BRP8",NA +"O95671_S21","This study (HEK293F TR) 15min",-0.0170432300035212,-0.141703080071516,0.889563082631497,0.942942431396507,"O95671",NA +"Q13480_S650","This study (HEK293F TR) 15min",0.0018571547029626,0.0130594431026136,0.989785608782202,0.994805705262154,"Q13480",NA diff --git a/vignettes/PTM-Analysis.Rmd b/vignettes/PTM-Analysis.Rmd index 7dd17c4..ffe02dd 100644 --- a/vignettes/PTM-Analysis.Rmd +++ b/vignettes/PTM-Analysis.Rmd @@ -66,19 +66,15 @@ annotated_df = annotateProteinInfoFromIndra(input, "Uniprot") head(annotated_df) ``` -## Subnetwork Query -The package provides a function `getSubnetworkFromIndra` that retrieves a -subnetwork of proteins from the INDRA database based on differential abundance -analysis results. +## getPathwaysFromIndra + +Here, we will get pathways from INDRA and rank them based on relevance. We will see here that GAB1 is rated as the most relevant edge to track. ```{r} -subnetwork <- getSubnetworkFromIndra(annotated_df) -head(subnetwork$nodes) -head(subnetwork$edges) +pathways = getPathwaysFromIndra(annotated_df, main_target = "P00533") ``` - ## Visualize Networks The function `visualizeNetworks` then takes the output of @@ -86,15 +82,19 @@ The function `visualizeNetworks` then takes the output of Cytoscape desktop to be open for the visualization to work. ```{r} -visualizeNetworks(subnetwork$nodes, subnetwork$edges) +visualizeNetworks(pathways$nodes, pathways$edges) ``` -## getPathwaysFromIndra +## Subnetwork Query -Here, we will get pathways from INDRA and rank them based on relevance. We will see here that GAB1 is rated as the most relevant edge to track. +The package provides a function `getSubnetworkFromIndra` that retrieves a +subnetwork of proteins from the INDRA database based on differential abundance +analysis results. This function may help finding off target subnetworks. ```{r} -print("hello world") +subnetwork <- getSubnetworkFromIndra(annotated_df, pvalueCutoff = 0.05) +head(subnetwork$nodes) +head(subnetwork$edges) ``` # Session info From 25507fa9ba1fba22cfc27d0f4a2e3b4973051614 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Sun, 8 Jun 2025 19:16:59 -0400 Subject: [PATCH 04/23] take the max logFC for ranking --- R/getPathwaysFromIndra.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/getPathwaysFromIndra.R b/R/getPathwaysFromIndra.R index f070fb0..2a5f734 100644 --- a/R/getPathwaysFromIndra.R +++ b/R/getPathwaysFromIndra.R @@ -120,7 +120,7 @@ getPathwaysFromIndra <- function(annotated_df, main_target = 'MEN1_HUMAN', targe collapse = ", ") prob_logFC = 0 logFC = annotated_df[which(annotated_df$HgncId == edgeToMetadataMapping[[key]]$target_id),] - logFC = logFC$log2FC[[1]] + logFC = logFC$log2FC[which.max(abs(logFC$log2FC))] if (logFC > para[1]) { prob_logFC = 1 - pnorm(logFC, mean = para[1], sd = para[2]) } else { From 3c5f4b7099250994fee7afcfd2812372ef2949fe Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Sun, 8 Jun 2025 19:33:13 -0400 Subject: [PATCH 05/23] Add ability to filter by phosphorylation interaction and include site info in subnetwork function --- vignettes/PTM-Analysis.Rmd | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/vignettes/PTM-Analysis.Rmd b/vignettes/PTM-Analysis.Rmd index ffe02dd..8bf2c4f 100644 --- a/vignettes/PTM-Analysis.Rmd +++ b/vignettes/PTM-Analysis.Rmd @@ -73,6 +73,8 @@ Here, we will get pathways from INDRA and rank them based on relevance. We will ```{r} pathways = getPathwaysFromIndra(annotated_df, main_target = "P00533") +# optional: filter by phosphorylation +pathways$edges = pathways$edges %>% filter(str_detect(interaction, "Phosphorylation")) ``` ## Visualize Networks @@ -82,7 +84,7 @@ The function `visualizeNetworks` then takes the output of Cytoscape desktop to be open for the visualization to work. ```{r} -visualizeNetworks(pathways$nodes, pathways$edges) +visualizeNetworks(subnetwork$nodes, subnetwork$edges) ``` ## Subnetwork Query From 207fd728059545c7ad33e62c5832f4b049b6f68b Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Sun, 8 Jun 2025 19:42:59 -0400 Subject: [PATCH 06/23] Update vignette to include statement types --- vignettes/PTM-Analysis.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vignettes/PTM-Analysis.Rmd b/vignettes/PTM-Analysis.Rmd index 8bf2c4f..b8611ce 100644 --- a/vignettes/PTM-Analysis.Rmd +++ b/vignettes/PTM-Analysis.Rmd @@ -94,7 +94,7 @@ subnetwork of proteins from the INDRA database based on differential abundance analysis results. This function may help finding off target subnetworks. ```{r} -subnetwork <- getSubnetworkFromIndra(annotated_df, pvalueCutoff = 0.05) +subnetwork <- getSubnetworkFromIndra(annotated_df, pvalueCutoff = 0.05, statement_types = c("Phosphorylation", "Activation", "Inhibition")) head(subnetwork$nodes) head(subnetwork$edges) ``` From 35605f1e246b494ef287a3538255fa0596505302 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Mon, 9 Jun 2025 08:58:44 -0400 Subject: [PATCH 07/23] Switch if-else statement for modifications vs other stmt types --- R/getPathwaysFromIndra.R | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/R/getPathwaysFromIndra.R b/R/getPathwaysFromIndra.R index 2a5f734..aa1792f 100644 --- a/R/getPathwaysFromIndra.R +++ b/R/getPathwaysFromIndra.R @@ -75,12 +75,12 @@ getPathwaysFromIndra <- function(annotated_df, main_target = 'MEN1_HUMAN', targe } else { namespaces = c() } - } else if (edge$type == "Phosphorylation") { - obj = edge$sub$db_refs$HGNC - namespaces = names(edge$sub$db_refs) - } else { + } else if (edge$type %in% c("Activation", "Inhibition", "IncreaseAmount", "DecreaseAmount")) { obj = edge$obj$db_refs$HGNC namespaces = names(edge$obj$db_refs) + } else { + obj = edge$sub$db_refs$HGNC + namespaces = names(edge$sub$db_refs) } # Filter out edges with no HGNC ID or not in the dataset From 6ed5888fe34d565ad6a3795c7ff9cf6e34815a31 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Tue, 2 Sep 2025 13:59:08 -0400 Subject: [PATCH 08/23] add site information to the edges table for getSubnetworkFromIndra --- R/utils_getSubnetworkFromIndra.R | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/R/utils_getSubnetworkFromIndra.R b/R/utils_getSubnetworkFromIndra.R index 2665769..4f5abe0 100644 --- a/R/utils_getSubnetworkFromIndra.R +++ b/R/utils_getSubnetworkFromIndra.R @@ -222,6 +222,7 @@ #' Collapse duplicate INDRA statements into a mapping of edge to metadata #' @param res INDRA response #' @param input filtered groupComparison result +#' @importFrom jsonlite fromJSON #' @importFrom r2r hashmap keys #' @return processed edge to metadata mapping #' @keywords internal @@ -231,6 +232,13 @@ for (edge in res) { key <- paste(edge$source_id, edge$target_id, edge$data$stmt_type, sep = "_") + json_object <- fromJSON(edge$data$stmt_json) + if (!is.null(json_object$residue) && !is.null(json_object$position)) { + edge$site = paste0(json_object$residue, json_object$position) + key <- paste(key, edge$site, sep = "_") + } else { + edge$site = NA_character_ + } if (key %in% keys(edgeToMetadataMapping)) { edgeToMetadataMapping[[key]]$data$evidence_count <- edgeToMetadataMapping[[key]]$data$evidence_count + @@ -252,6 +260,7 @@ #' @param input filtered groupComparison result #' @param protein_level_data output of dataProcess #' @importFrom r2r query keys +#' @importFrom jsonlite fromJSON #' @return edge data.frame #' @keywords internal #' @noRd @@ -279,6 +288,9 @@ sourceCounts = vapply(keys(res), function(x) { query(res, x)$data$source_counts }, ""), + site = vapply(keys(res), function(x) { + query(res, x)$site + }, ""), stringsAsFactors = FALSE ) # add correlation - maybe create a separate function From ba08baf2b0ed7a7b177e821c9c8539357597274c Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Tue, 2 Sep 2025 14:47:04 -0400 Subject: [PATCH 09/23] add site information in the nodes table --- R/utils_getSubnetworkFromIndra.R | 102 ++++++++++++------------------- 1 file changed, 39 insertions(+), 63 deletions(-) diff --git a/R/utils_getSubnetworkFromIndra.R b/R/utils_getSubnetworkFromIndra.R index 4f5abe0..df431d5 100644 --- a/R/utils_getSubnetworkFromIndra.R +++ b/R/utils_getSubnetworkFromIndra.R @@ -10,7 +10,8 @@ if (!"HgncId" %in% colnames(input)) { stop("Invalid Input Error: Input must contain a column named 'HgncId'.") } - num_proteins = nrow(input) + ifelse(!is.null(force_include_other), length(force_include_other), 0) + num_proteins = length(unique(input$HgncId)) + + ifelse(!is.null(force_include_other), length(force_include_other), 0) if (num_proteins >= 400) { stop("Invalid Input Error: INDRA query must contain less than 400 proteins. Consider lowering your p-value cutoff") } @@ -41,6 +42,7 @@ indraCogexUrl <- "https://discovery.indra.bio/api/indra_subnetwork_relations" + hgncIds = unique(hgncIds) groundings <- lapply(hgncIds, function(x) list("HGNC", x)) if (!is.null(force_include_other)) { groundings <- c(groundings, lapply(force_include_other, function(x) { @@ -141,49 +143,14 @@ } input$Protein <- as.character(input$Protein) - # TODO: Make PTM processing more robust + + # Handle PTMs in Protein column + input$Site = ifelse(grepl("_[A-Z][0-9]", input$Protein), + gsub(".*?_(?=[A-Z][0-9])", "", input$Protein, perl = TRUE), + NA_character_) if ("GlobalProtein" %in% colnames(input)) { - input$Site <- as.character(input$Protein) - input$Protein <- as.character(input$GlobalProtein) - # Summarize rows by protein: mean adj.pvalue and log2FC, keep other columns - if (any(duplicated(input$Protein))) { - # Get unique proteins - unique_proteins <- unique(input$Protein) - - # Initialize result data frame - result_list <- list() - - for (i in seq_along(unique_proteins)) { - protein <- unique_proteins[i] - protein_rows <- input[input$Protein == protein, , drop = FALSE] - - if (nrow(protein_rows) == 1) { - # Single row, keep as is - result_list[[i]] <- protein_rows - } else { - # Multiple rows, summarize - summarized_row <- protein_rows[1, , drop = FALSE] # Start with first row - - # Calculate mean for adj.pvalue if it exists - if ("adj.pvalue" %in% names(protein_rows) && is.numeric(protein_rows$adj.pvalue)) { - summarized_row$adj.pvalue <- mean(protein_rows$adj.pvalue, na.rm = TRUE) - } - - # Calculate mean for log2FC if it exists - if ("log2FC" %in% names(protein_rows) && is.numeric(protein_rows$log2FC)) { - summarized_row$log2FC <- mean(protein_rows$log2FC, na.rm = TRUE) - } - - result_list[[i]] <- summarized_row - } - } - - # Combine all results - input <- do.call(rbind, result_list) - rownames(input) <- NULL - } + input$Protein = input$GlobalProtein } - return(input) } #' Add additional metadata to an edge @@ -202,17 +169,19 @@ # Convert back to uniprot IDs matched_rows_source <- input[which(input$HgncId == edge$source_id), ] - if (nrow(matched_rows_source) != 1) { + uniprot_ids_source <- unique(matched_rows_source$Protein) + if (length(uniprot_ids_source) != 1) { edge$source_uniprot_id <- edge$source_name } else { - edge$source_uniprot_id <- matched_rows_source$Protein + edge$source_uniprot_id <- uniprot_ids_source } matched_rows_target <- input[which(input$HgncId == edge$target_id), ] - if (nrow(matched_rows_target) != 1) { + uniprot_ids_target = unique(matched_rows_target$Protein) + if (length(uniprot_ids_target) != 1) { edge$target_uniprot_id <- edge$target_name } else { - edge$target_uniprot_id <- matched_rows_target$Protein + edge$target_uniprot_id <- uniprot_ids_target } return(edge) @@ -317,24 +286,31 @@ #' @keywords internal #' @noRd .constructNodesDataFrame <- function(input, edges) { - # Get unique nodes from edges - node_ids <- unique(c(edges$source, edges$target)) + nodes = input[, c("Protein", "log2FC", "adj.pvalue", "HgncName", "Site")] + colnames(nodes) = c("id", "logFC", "adj.pvalue", "hgncName", "Site") - # Create base nodes dataframe - nodes <- data.frame( - id = node_ids, - stringsAsFactors = FALSE - ) - - # Add attributes from input where available - nodes$logFC <- input$log2FC[match(nodes$id, input$Protein)] - nodes$adj.pvalue <- input$adj.pvalue[match(nodes$id, input$Protein)] - nodes$hgncName <- if ("HgncName" %in% colnames(input) && is.character(input$HgncName)) { - hgnc_value <- input$HgncName[match(nodes$id, input$Protein)] - ifelse(is.na(hgnc_value), nodes$id, hgnc_value) - } else { - nodes$id - } + nodes = nodes[nodes$id %in% c(edges$source, edges$target), ] + nodes$hgncName = ifelse(is.na(nodes$hgncName), nodes$id, nodes$hgncName) + # + # # Get unique nodes from edges + # node_ids <- unique(c(edges$source, edges$target)) + # + # # Create base nodes dataframe + # nodes <- data.frame( + # id = node_ids, + # stringsAsFactors = FALSE + # ) + # + # # Add attributes from input where available + # nodes$logFC <- input$log2FC[match(nodes$id, input$Protein)] + # nodes$adj.pvalue <- input$adj.pvalue[match(nodes$id, input$Protein)] + # nodes$hgncName <- if ("HgncName" %in% colnames(input) && is.character(input$HgncName)) { + # hgnc_value <- input$HgncName[match(nodes$id, input$Protein)] + # ifelse(is.na(hgnc_value), nodes$id, hgnc_value) + # } else { + # nodes$id + # } + # nodes$site <- input$Site[match(nodes$id, input$Protein)] return(nodes) } From d60e59cf6e64f1d3204e48ed668869ee7386e268 Mon Sep 17 00:00:00 2001 From: tonywu1999 Date: Wed, 3 Sep 2025 11:31:15 -0400 Subject: [PATCH 10/23] add hover tooltip first attempt --- R/visualizeNetworksWithHTML.R | 134 +++++++++++++++++++++++++++++----- 1 file changed, 116 insertions(+), 18 deletions(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index cd4772b..b3f6be6 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -1,8 +1,3 @@ -# ============================================================================= -# CYTOSCAPE VISUALIZATION PACKAGE FUNCTIONS -# These functions should go in your separate package -# ============================================================================= - #' Helper function to map logFC values to colors #' @param logFC_values Numeric vector of log fold change values #' @importFrom grDevices colorRamp rgb @@ -79,8 +74,50 @@ getRelationshipProperties <- function() { ) } +#' Calculate PTM site overlap between edge targets and nodes +#' @param edges Data frame with edge information including 'target' and 'site' columns +#' @param nodes Data frame with node information including 'id' and 'Site' columns +#' @return Vector of overlap descriptions for each edge +#' @noRd +calculatePTMOverlap <- function(edges, nodes) { + overlap_info <- character(nrow(edges)) + + for (i in 1:nrow(edges)) { + edge <- edges[i, ] + overlap_sites <- c() + + # Check if edge has target and site information + if (!is.na(edge$target) && "site" %in% names(edge) && !is.na(edge$site)) { + # Find matching node + target_node <- nodes[nodes$id == edge$target, ] + + if (nrow(target_node) > 0 && "Site" %in% names(target_node) && !is.na(target_node$Site[1])) { + edge_sites <- trimws(unlist(strsplit(as.character(edge$site), "[,;|]"))) + node_sites <- trimws(unlist(strsplit(as.character(target_node$Site[1]), "[,;|]"))) + + # Find overlapping sites + overlap_sites <- intersect(edge_sites, node_sites) + overlap_sites <- overlap_sites[overlap_sites != "" & !is.na(overlap_sites)] + } + } + + # Create tooltip text + if (length(overlap_sites) > 0) { + if (length(overlap_sites) == 1) { + overlap_info[i] <- paste0("Overlapping PTM site: ", overlap_sites[1]) + } else { + overlap_info[i] <- paste0("Overlapping PTM sites: ", paste(overlap_sites, collapse = ", ")) + } + } else { + overlap_info[i] <- "No overlapping PTM sites found" + } + } + + return(overlap_info) +} + # Consolidate bidirectional edges based on relationship type -consolidateEdges <- function(edges) { +consolidateEdges <- function(edges, nodes = NULL) { if (nrow(edges) == 0) return(edges) required_cols <- c("source", "target", "interaction") @@ -89,6 +126,13 @@ consolidateEdges <- function(edges) { stop("Missing required columns: ", paste(missing_cols, collapse = ", ")) } + # Calculate PTM overlap information if nodes are provided + ptm_overlap <- if (!is.null(nodes)) { + calculatePTMOverlap(edges, nodes) + } else { + rep("", nrow(edges)) + } + relationship_props <- getRelationshipProperties() consolidated_edges <- list() processed_pairs <- c() @@ -128,6 +172,7 @@ consolidateEdges <- function(edges) { interaction = edge$interaction, edge_type = "undirected", category = category, + ptm_overlap = ptm_overlap[i], stringsAsFactors = FALSE ) } else { @@ -138,6 +183,7 @@ consolidateEdges <- function(edges) { interaction = paste(edge$interaction, "(bidirectional)"), edge_type = "bidirectional", category = category, + ptm_overlap = ptm_overlap[i], stringsAsFactors = FALSE ) } @@ -159,6 +205,7 @@ consolidateEdges <- function(edges) { directed_edge <- edge directed_edge$edge_type <- "directed" directed_edge$category <- category + directed_edge$ptm_overlap <- ptm_overlap[i] edge_key <- paste(edge$source, edge$target, edge$interaction, sep = "-") consolidated_edges[[edge_key]] <- directed_edge @@ -242,11 +289,11 @@ createNodeElements <- function(nodes, displayLabelType = "id") { }) } -createEdgeElements <- function(edges) { +createEdgeElements <- function(edges, nodes = NULL) { if (nrow(edges) == 0) return(list()) - # First consolidate edges - consolidated_edges <- consolidateEdges(edges) + # First consolidate edges (now includes PTM overlap calculation) + consolidated_edges <- consolidateEdges(edges, nodes) edge_elements <- list() @@ -262,7 +309,10 @@ createEdgeElements <- function(edges) { evidence_link <- ifelse(is.na(evidence_link) | evidence_link == "NA", "", evidence_link) evidence_link <- escape_js_string(evidence_link) - # Create edge data with styling information + # Escape quotes in tooltip text for JavaScript safety + tooltip_text <- gsub("'", "\\\\'", row$ptm_overlap) + + # Create edge data with styling information and PTM overlap tooltip edge_data <- paste0("{ data: { source: '", row$source, "', target: '", row$target, "', id: '", edge_key, @@ -273,7 +323,8 @@ createEdgeElements <- function(edges) { "', color: '", style$color, "', line_style: '", style$style, "', arrow_shape: '", style$arrow, - "', width: ", style$width, " } }") + "', width: ", style$width, + ", tooltip: '", tooltip_text, "' } }") edge_elements[[edge_key]] <- edge_data } @@ -317,9 +368,9 @@ generateCytoscapeConfig <- function(nodes, edges, event_handlers = NULL, layout_options = NULL) { - # Create elements + # Create elements (now passing nodes to edge creation for PTM overlap) node_elements <- createNodeElements(nodes, display_label_type) - edge_elements <- createEdgeElements(edges) + edge_elements <- createEdgeElements(edges, nodes) # Default layout options default_layout <- list( @@ -342,7 +393,7 @@ generateCytoscapeConfig <- function(nodes, edges, } } - # Define the style configuration (same as before) + # Define the style configuration with tooltip support style_config <- list( list( selector = "node", @@ -460,7 +511,7 @@ generateJavaScriptCode <- function(config) { event_handlers_js <- paste(handlers, collapse = "\n ") } - # Generate the complete JavaScript code + # Generate the complete JavaScript code with tooltip functionality js_code <- paste0(" cytoscape.use(cytoscapeDagre); var cy = cytoscape({ @@ -470,6 +521,48 @@ generateJavaScriptCode <- function(config) { layout: ", layout_js, " }); + // Create tooltip element + var tooltip = document.createElement('div'); + tooltip.style.cssText = ` + position: absolute; + background-color: rgba(0, 0, 0, 0.9); + color: white; + padding: 8px 12px; + border-radius: 4px; + font-size: 12px; + font-family: Arial, sans-serif; + white-space: nowrap; + pointer-events: none; + z-index: 9999; + box-shadow: 0 2px 8px rgba(0, 0, 0, 0.3); + display: none; + max-width: 300px; + word-wrap: break-word; + white-space: pre-wrap; + `; + document.body.appendChild(tooltip); + + // Add tooltip event handlers for edges with PTM overlap information + cy.on('mouseover', 'edge', function(evt) { + var edge = evt.target; + var tooltipText = edge.data('tooltip'); + if (tooltipText && tooltipText.trim() !== '') { + tooltip.innerHTML = tooltipText; + tooltip.style.display = 'block'; + } + }); + + cy.on('mousemove', 'edge', function(evt) { + if (tooltip.style.display === 'block') { + tooltip.style.left = evt.originalEvent.pageX + 10 + 'px'; + tooltip.style.top = evt.originalEvent.pageY - 30 + 'px'; + } + }); + + cy.on('mouseout', 'edge', function(evt) { + tooltip.style.display = 'none'; + }); + ", event_handlers_js) return(js_code) @@ -627,7 +720,7 @@ exportCytoscapeToHTML <- function(config, });' } - # Create the complete HTML content + # Create the complete HTML content with enhanced tooltip description html_content <- paste0(' @@ -665,7 +758,7 @@ exportCytoscapeToHTML <- function(config, } #' - , config$container_id, ' { + , config$container_id, ' { width: ', width, '; height: ', height, '; border: 1px solid #ddd; @@ -768,6 +861,7 @@ exportCytoscapeToHTML <- function(config, Instructions: Click and drag to pan the network | Use mouse wheel to zoom in/out + | Hover over edges to see PTM site overlap information | Click on nodes or edges to select them ', if(include_controls) '| Use the buttons above for common navigation actions' else '', ' @@ -846,6 +940,10 @@ exportCytoscapeToHTML <- function(config, Complex +
+ PTM Site Info:
+ Hover over edges to see overlapping PTM sites between the edge target and node data +
`; legendDiv.innerHTML = legendHTML; @@ -934,7 +1032,7 @@ exportNetworkToHTML <- function(nodes, edges, previewNetworkInBrowser <- function(nodes, edges, displayLabelType = "id", ...) { - + # Generate configuration config <- generateCytoscapeConfig(nodes, edges, display_label_type = displayLabelType) From d911ceb29b0d3cdb355ad87320fb7d922d345992 Mon Sep 17 00:00:00 2001 From: tonywu1999 Date: Wed, 3 Sep 2025 11:49:32 -0400 Subject: [PATCH 11/23] hover tool tip fully working now with site info --- R/visualizeNetworksWithHTML.R | 102 ++++++++++++++++++++++------------ 1 file changed, 67 insertions(+), 35 deletions(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index b3f6be6..dad0d65 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -74,42 +74,67 @@ getRelationshipProperties <- function() { ) } -#' Calculate PTM site overlap between edge targets and nodes +#' Calculate PTM site overlap between edge targets and nodes with aggregation #' @param edges Data frame with edge information including 'target' and 'site' columns #' @param nodes Data frame with node information including 'id' and 'Site' columns -#' @return Vector of overlap descriptions for each edge +#' @return Vector of overlap descriptions for each unique edge (after consolidation) #' @noRd -calculatePTMOverlap <- function(edges, nodes) { - overlap_info <- character(nrow(edges)) +calculatePTMOverlapAggregated <- function(edges, nodes) { + if (nrow(edges) == 0) return(character(0)) - for (i in 1:nrow(edges)) { - edge <- edges[i, ] - overlap_sites <- c() + # Group edges by source-target-interaction to match consolidation logic + edges$edge_key <- paste(edges$source, edges$target, edges$interaction, sep = "-") + unique_edges <- unique(edges$edge_key) + + overlap_info <- character(length(unique_edges)) + names(overlap_info) <- unique_edges + + for (edge_key in unique_edges) { + # Get all edges with this source-target-interaction combination + matching_edges <- edges[edges$edge_key == edge_key, ] + all_overlap_sites <- c() - # Check if edge has target and site information - if (!is.na(edge$target) && "site" %in% names(edge) && !is.na(edge$site)) { - # Find matching node - target_node <- nodes[nodes$id == edge$target, ] + # Process each matching edge to find PTM overlaps + for (i in 1:nrow(matching_edges)) { + edge <- matching_edges[i, ] - if (nrow(target_node) > 0 && "Site" %in% names(target_node) && !is.na(target_node$Site[1])) { - edge_sites <- trimws(unlist(strsplit(as.character(edge$site), "[,;|]"))) - node_sites <- trimws(unlist(strsplit(as.character(target_node$Site[1]), "[,;|]"))) + # Check if edge has target and site information + if (!is.na(edge$target) && "site" %in% names(edge) && !is.na(edge$site)) { + # Find matching nodes with the same target ID + target_nodes <- nodes[nodes$id == edge$target, ] - # Find overlapping sites - overlap_sites <- intersect(edge_sites, node_sites) - overlap_sites <- overlap_sites[overlap_sites != "" & !is.na(overlap_sites)] + if (nrow(target_nodes) > 0 && "Site" %in% names(target_nodes)) { + edge_sites <- trimws(unlist(strsplit(as.character(edge$site), "[,;|]"))) + + # Check each target node row for site matches + for (j in 1:nrow(target_nodes)) { + if (!is.na(target_nodes$Site[j])) { + node_sites <- trimws(unlist(strsplit(as.character(target_nodes$Site[j]), "[,;|]"))) + + # Find overlapping sites for this edge-node combination + overlap_sites <- intersect(edge_sites, node_sites) + overlap_sites <- overlap_sites[overlap_sites != "" & !is.na(overlap_sites)] + + # Add to the aggregate list + all_overlap_sites <- c(all_overlap_sites, overlap_sites) + } + } + } } } - # Create tooltip text - if (length(overlap_sites) > 0) { - if (length(overlap_sites) == 1) { - overlap_info[i] <- paste0("Overlapping PTM site: ", overlap_sites[1]) + # Remove duplicates and create tooltip text for this consolidated edge + unique_overlap_sites <- unique(all_overlap_sites) + unique_overlap_sites <- unique_overlap_sites[unique_overlap_sites != "" & !is.na(unique_overlap_sites)] + + if (length(unique_overlap_sites) > 0) { + if (length(unique_overlap_sites) == 1) { + overlap_info[edge_key] <- paste0("Overlapping PTM site: ", unique_overlap_sites[1]) } else { - overlap_info[i] <- paste0("Overlapping PTM sites: ", paste(overlap_sites, collapse = ", ")) + overlap_info[edge_key] <- paste0("Overlapping PTM sites: ", paste(unique_overlap_sites, collapse = ", ")) } } else { - overlap_info[i] <- "No overlapping PTM sites found" + overlap_info[edge_key] <- "No overlapping PTM sites found" } } @@ -126,11 +151,11 @@ consolidateEdges <- function(edges, nodes = NULL) { stop("Missing required columns: ", paste(missing_cols, collapse = ", ")) } - # Calculate PTM overlap information if nodes are provided - ptm_overlap <- if (!is.null(nodes)) { - calculatePTMOverlap(edges, nodes) + # Calculate aggregated PTM overlap information if nodes are provided + ptm_overlap_map <- if (!is.null(nodes)) { + calculatePTMOverlapAggregated(edges, nodes) } else { - rep("", nrow(edges)) + NULL } relationship_props <- getRelationshipProperties() @@ -140,7 +165,6 @@ consolidateEdges <- function(edges, nodes = NULL) { for (i in 1:nrow(edges)) { edge <- edges[i, ] pair_key <- paste(sort(c(edge$source, edge$target)), edge$interaction, collapse = "-") - reverse_key <- paste(sort(c(edge$source, edge$target), decreasing = TRUE), edge$interaction, sep = "-") # Skip if we've already processed this pair if (pair_key %in% processed_pairs) next @@ -162,6 +186,14 @@ consolidateEdges <- function(edges, nodes = NULL) { consolidation_type <- relationship_props[[category]]$consolidate + # Get PTM overlap info for this edge combination + edge_key <- paste(edge$source, edge$target, edge$interaction, sep = "-") + ptm_overlap_text <- if (!is.null(ptm_overlap_map) && edge_key %in% names(ptm_overlap_map)) { + ptm_overlap_map[[edge_key]] + } else { + "" + } + if (nrow(reverse_edges) > 0 && consolidation_type %in% c("undirected", "bidirectional")) { # Create consolidated edge if (consolidation_type == "undirected") { @@ -172,7 +204,7 @@ consolidateEdges <- function(edges, nodes = NULL) { interaction = edge$interaction, edge_type = "undirected", category = category, - ptm_overlap = ptm_overlap[i], + ptm_overlap = ptm_overlap_text, stringsAsFactors = FALSE ) } else { @@ -183,7 +215,7 @@ consolidateEdges <- function(edges, nodes = NULL) { interaction = paste(edge$interaction, "(bidirectional)"), edge_type = "bidirectional", category = category, - ptm_overlap = ptm_overlap[i], + ptm_overlap = ptm_overlap_text, stringsAsFactors = FALSE ) } @@ -194,8 +226,8 @@ consolidateEdges <- function(edges, nodes = NULL) { consolidated_edge[[col]] <- edge[[col]] } - edge_key <- paste(edge$source, edge$target, consolidated_edge$interaction, sep = "-") - consolidated_edges[[edge_key]] <- consolidated_edge + edge_key_final <- paste(edge$source, edge$target, consolidated_edge$interaction, sep = "-") + consolidated_edges[[edge_key_final]] <- consolidated_edge # Mark both directions as processed processed_pairs <- c(processed_pairs, pair_key) @@ -205,10 +237,10 @@ consolidateEdges <- function(edges, nodes = NULL) { directed_edge <- edge directed_edge$edge_type <- "directed" directed_edge$category <- category - directed_edge$ptm_overlap <- ptm_overlap[i] + directed_edge$ptm_overlap <- ptm_overlap_text - edge_key <- paste(edge$source, edge$target, edge$interaction, sep = "-") - consolidated_edges[[edge_key]] <- directed_edge + edge_key_final <- paste(edge$source, edge$target, edge$interaction, sep = "-") + consolidated_edges[[edge_key_final]] <- directed_edge } } From c206517f76cba9009045480f64e14ceac1831d8c Mon Sep 17 00:00:00 2001 From: tonywu1999 Date: Wed, 3 Sep 2025 12:02:49 -0400 Subject: [PATCH 12/23] finalize ptm overlap hover functionality --- R/visualizeNetworksWithHTML.R | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index dad0d65..00e3202 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -127,6 +127,7 @@ calculatePTMOverlapAggregated <- function(edges, nodes) { unique_overlap_sites <- unique(all_overlap_sites) unique_overlap_sites <- unique_overlap_sites[unique_overlap_sites != "" & !is.na(unique_overlap_sites)] + # CHANGED: Only create tooltip text if there are actual overlapping sites if (length(unique_overlap_sites) > 0) { if (length(unique_overlap_sites) == 1) { overlap_info[edge_key] <- paste0("Overlapping PTM site: ", unique_overlap_sites[1]) @@ -134,7 +135,8 @@ calculatePTMOverlapAggregated <- function(edges, nodes) { overlap_info[edge_key] <- paste0("Overlapping PTM sites: ", paste(unique_overlap_sites, collapse = ", ")) } } else { - overlap_info[edge_key] <- "No overlapping PTM sites found" + # CHANGED: Return empty string instead of "No overlapping PTM sites found" + overlap_info[edge_key] <- "" } } @@ -237,7 +239,7 @@ consolidateEdges <- function(edges, nodes = NULL) { directed_edge <- edge directed_edge$edge_type <- "directed" directed_edge$category <- category - directed_edge$ptm_overlap <- ptm_overlap_text + directed_edge$ptm_overlap = ptm_overlap_text edge_key_final <- paste(edge$source, edge$target, edge$interaction, sep = "-") consolidated_edges[[edge_key_final]] <- directed_edge @@ -543,7 +545,7 @@ generateJavaScriptCode <- function(config) { event_handlers_js <- paste(handlers, collapse = "\n ") } - # Generate the complete JavaScript code with tooltip functionality + # Generate the complete JavaScript code with modified tooltip functionality js_code <- paste0(" cytoscape.use(cytoscapeDagre); var cy = cytoscape({ @@ -574,11 +576,11 @@ generateJavaScriptCode <- function(config) { `; document.body.appendChild(tooltip); - // Add tooltip event handlers for edges with PTM overlap information + // Only show tooltip if there's actual PTM overlap information cy.on('mouseover', 'edge', function(evt) { var edge = evt.target; var tooltipText = edge.data('tooltip'); - if (tooltipText && tooltipText.trim() !== '') { + if (tooltipText && tooltipText.trim() !== '' && tooltipText.trim() !== 'No overlapping PTM sites found') { tooltip.innerHTML = tooltipText; tooltip.style.display = 'block'; } From f7907485b137677fffaaa1ae3ceaddde670bf361 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:05:11 -0400 Subject: [PATCH 13/23] consider scenario where global protein column does not exist --- R/annotateProteinInfoFromIndra.R | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/R/annotateProteinInfoFromIndra.R b/R/annotateProteinInfoFromIndra.R index a6f8fb7..d6cb145 100644 --- a/R/annotateProteinInfoFromIndra.R +++ b/R/annotateProteinInfoFromIndra.R @@ -55,15 +55,17 @@ annotateProteinInfoFromIndra <- function(df, proteinIdType) { #' It can be either "Uniprot" or "Uniprot_Mnemonic". #' @return A data frame with populated Uniprot IDs. .populateUniprotIdsInDataFrame <- function(df, proteinIdType) { - # TODO: Handle PTM dataset more robustly if ("GlobalProtein" %in% colnames(df)) { - protein_ids = df$GlobalProtein + protein_ids = unique(df$GlobalProtein) } else { - protein_ids = df$Protein + df$GlobalProtein = ifelse(grepl("_[A-Z][0-9]", df$Protein), + gsub("_[A-Z][0-9].*", "", df$Protein, perl = TRUE), + df$Protein) + protein_ids = unique(df$GlobalProtein) } df$UniprotId <- NA if (proteinIdType == "Uniprot") { - df$UniprotId <- as.character(protein_ids) + df$UniprotId <- as.character(df$GlobalProtein) } if (proteinIdType == "Uniprot_Mnemonic") { @@ -72,7 +74,7 @@ annotateProteinInfoFromIndra <- function(df, proteinIdType) { uniprotMapping <- .callGetUniprotIdsFromUniprotMnemonicIdsApi(as.list(mnemonicProteins)) for (mnemonicId in names(uniprotMapping)) { if (!is.null(uniprotMapping[[mnemonicId]])) { - df$UniprotId[df$Protein == mnemonicId] <- uniprotMapping[[mnemonicId]] + df$UniprotId[df$GlobalProtein == mnemonicId] <- uniprotMapping[[mnemonicId]] } } } From c8f53d19a320248c5e0c54eed48a1a9ee08997b9 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:09:19 -0400 Subject: [PATCH 14/23] remove getpathwaysfromindra --- DESCRIPTION | 3 +- NAMESPACE | 3 - R/getPathwaysFromIndra.R | 176 ------------------------------------ man/getPathwaysFromIndra.Rd | 38 -------- 4 files changed, 1 insertion(+), 219 deletions(-) delete mode 100644 R/getPathwaysFromIndra.R delete mode 100644 man/getPathwaysFromIndra.Rd diff --git a/DESCRIPTION b/DESCRIPTION index 84fff48..e869e86 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -23,8 +23,7 @@ Imports: httr, jsonlite, r2r, - tidyr, - MASS + tidyr Suggests: data.table, BiocStyle, diff --git a/NAMESPACE b/NAMESPACE index b2e4376..e84ce42 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -3,11 +3,9 @@ export(annotateProteinInfoFromIndra) export(exportNetworkToHTML) export(generateCytoscapeConfig) -export(getPathwaysFromIndra) export(getSubnetworkFromIndra) export(previewNetworkInBrowser) export(visualizeNetworks) -importFrom(MASS,fitdistr) importFrom(RCy3,addAnnotationShape) importFrom(RCy3,addAnnotationText) importFrom(RCy3,createNetworkFromDataFrames) @@ -20,7 +18,6 @@ importFrom(RCy3,mapVisualProperty) importFrom(RCy3,setVisualStyle) importFrom(grDevices,colorRamp) importFrom(grDevices,rgb) -importFrom(httr,GET) importFrom(httr,POST) importFrom(httr,add_headers) importFrom(httr,content) diff --git a/R/getPathwaysFromIndra.R b/R/getPathwaysFromIndra.R deleted file mode 100644 index aa1792f..0000000 --- a/R/getPathwaysFromIndra.R +++ /dev/null @@ -1,176 +0,0 @@ -#' Get pathways ranked on relevance from INDRA DB -#' -#' @importFrom httr GET content -#' @importFrom MASS fitdistr -#' @importFrom r2r hashmap keys query -#' -#' @param annotated_df output of \code{\link[MSstats]{groupComparison}} function's -#' comparisionResult table, which contains a list of proteins and their -#' corresponding p-values, logFCs, along with additional HGNC ID and HGNC -#' name columns -#' @param main_target A main target, e.g. main target of a drug or protein of -#' particular interest -#' @param target_type One of either 'Protein' or 'Drug'. Default is 'Protein' -#' -#' @return df of pathways -#' -#' @export -#' -#' @examples -#' annotated_df <- data.table::fread(system.file( -#' "extdata/groupComparisonModel.csv", -#' package = "MSstatsBioNet" -#' )) -#' pathways <- getPathwaysFromIndra(annotated_df, "P05067") -#' head(pathways) -#' -getPathwaysFromIndra <- function(annotated_df, main_target = 'MEN1_HUMAN', target_type = "Protein") { - annotated_df$Protein <- as.character(annotated_df$Protein) - log2fc_values <- annotated_df$log2FC - fit <- fitdistr(log2fc_values, "normal") - para <- fit$estimate - # pnorm(0, mean = para[1], sd = para[2]) - - # Fit a power-law-like curve - b = -0.08 - m = -1.33 - # 1 - 10^(m*log10(1000)+b) - # probability - - # Call INDRA - if (target_type == "Protein") { - main_target_row = annotated_df[annotated_df$Protein == main_target,] - source_id = as.character(main_target_row$HgncId[1]) - namespace = "@HGNC" - id_field = "HGNC" - } else if (target_type == "Drug") { - source_id = main_target - namespace = "" - id_field = "TEXT" - } else { - stop("Invalid target type.") - } - url = paste('https://db.indra.bio/statements/from_agents?subject=', - source_id, namespace, sep = "") - response <- GET(url) - z = content(response) - - edgeToMetadataMapping <- hashmap() - - if (length(z$statements) == 0) { - return(data.frame()) - } - - for (index in seq(1, length(z$statements))) { - edge <- z$statements[[index]] - if (edge$type == "Complex") { - if (length(edge$members) == 2) { - if (identical(edge$members[[1]]$db_refs[[id_field]], source_id)) { - obj = edge$members[[2]]$db_refs$HGNC - namespaces = names(edge$members[[2]]$db_refs) - } else { - obj = edge$members[[1]]$db_refs$HGNC - namespaces = names(edge$members[[1]]$db_refs) - } - } else { - namespaces = c() - } - } else if (edge$type %in% c("Activation", "Inhibition", "IncreaseAmount", "DecreaseAmount")) { - obj = edge$obj$db_refs$HGNC - namespaces = names(edge$obj$db_refs) - } else { - obj = edge$sub$db_refs$HGNC - namespaces = names(edge$sub$db_refs) - } - - # Filter out edges with no HGNC ID or not in the dataset - if (!("HGNC" %in% namespaces)) { - next - } else if (!(obj %in% annotated_df$HgncId)) { - next - } - - key <- paste(source_id, obj, sep = "_") - - if (key %in% keys(edgeToMetadataMapping)) { - edgeToMetadataMapping[[key]]$data$evidence_count <- - edgeToMetadataMapping[[key]]$data$evidence_count + - z$evidence_counts[[index]] - edgeToMetadataMapping[[key]]$data$stmt_type <- unique(c( - edgeToMetadataMapping[[key]]$data$stmt_type, - edge$type)) - } else { - # edge <- MSstatsBioNet:::.addAdditionalMetadataToIndraEdge(edge, annotated_df) - edgeToMetadataMapping[[key]] <- edge - edgeToMetadataMapping[[key]]$data$evidence_count <- - z$evidence_counts[[index]] - edgeToMetadataMapping[[key]]$data$stmt_type <- c(edge$type) - edgeToMetadataMapping[[key]]$source_id <- source_id - edgeToMetadataMapping[[key]]$target_id <- obj - edgeToMetadataMapping[[key]] <- .addAdditionalMetadataToIndraEdge( - edgeToMetadataMapping[[key]], annotated_df - ) - } - } - - # Calculate probabilities - for (key in keys(edgeToMetadataMapping)) { - edgeToMetadataMapping[[key]]$data$stmt_type <- - paste(unique(edgeToMetadataMapping[[key]]$data$stmt_type), - collapse = ", ") - prob_logFC = 0 - logFC = annotated_df[which(annotated_df$HgncId == edgeToMetadataMapping[[key]]$target_id),] - logFC = logFC$log2FC[which.max(abs(logFC$log2FC))] - if (logFC > para[1]) { - prob_logFC = 1 - pnorm(logFC, mean = para[1], sd = para[2]) - } else { - prob_logFC = pnorm(logFC, mean = para[1], sd = para[2]) - } - evidence_prob = 10^(m*log10(edgeToMetadataMapping[[key]]$data$evidence_count)+b) - edgeToMetadataMapping[[key]]$data$total_prob = 1 - ((1 - prob_logFC) * (1 - evidence_prob)) - edgeToMetadataMapping[[key]]$data$logFC = logFC - } - - # Construct DF and sort - edges <- data.frame( - source = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$source_uniprot_id - }, ""), - target = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$target_uniprot_id - }, ""), - interaction = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$data$stmt_type - }, ""), - evidenceCount = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$data$evidence_count - }, 1), - logFC = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$data$logFC - }, 1), - prob = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$data$total_prob - }, 1), - evidenceLink = vapply(keys(edgeToMetadataMapping), function(x) { - query(edgeToMetadataMapping, x)$evidence_list - }, ""), - stringsAsFactors = FALSE - ) - - nodes <- .constructNodesDataFrame( - annotated_df, edges - ) - if (!(main_target %in% nodes$id)) { - # add a row with the main target - nodes <- rbind( - nodes, - data.frame( - id = main_target, - logFC = 0, - pvalue = 0, - hgncName = main_target - ) - ) - } - return(list(nodes = nodes, edges = edges)) -} \ No newline at end of file diff --git a/man/getPathwaysFromIndra.Rd b/man/getPathwaysFromIndra.Rd deleted file mode 100644 index 9f37110..0000000 --- a/man/getPathwaysFromIndra.Rd +++ /dev/null @@ -1,38 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/getPathwaysFromIndra.R -\name{getPathwaysFromIndra} -\alias{getPathwaysFromIndra} -\title{Get pathways ranked on relevance from INDRA DB} -\usage{ -getPathwaysFromIndra( - annotated_df, - main_target = "MEN1_HUMAN", - target_type = "Protein" -) -} -\arguments{ -\item{annotated_df}{output of \code{\link[MSstats]{groupComparison}} function's -comparisionResult table, which contains a list of proteins and their -corresponding p-values, logFCs, along with additional HGNC ID and HGNC -name columns} - -\item{main_target}{A main target, e.g. main target of a drug or protein of -particular interest} - -\item{target_type}{One of either 'Protein' or 'Drug'. Default is 'Protein'} -} -\value{ -df of pathways -} -\description{ -Get pathways ranked on relevance from INDRA DB -} -\examples{ -annotated_df <- data.table::fread(system.file( - "extdata/groupComparisonModel.csv", - package = "MSstatsBioNet" -)) -pathways <- getPathwaysFromIndra(annotated_df, "P05067") -head(pathways) - -} From 60196fd800c75dc960585c984e4827c8771ff8f3 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:21:41 -0400 Subject: [PATCH 15/23] modify PTM vignette --- inst/extdata/2_egf_data.csv | 633 ---------------------------------- inst/extdata/garrido-2024.csv | 23 ++ vignettes/PTM-Analysis.Rmd | 45 +-- 3 files changed, 30 insertions(+), 671 deletions(-) delete mode 100644 inst/extdata/2_egf_data.csv create mode 100644 inst/extdata/garrido-2024.csv diff --git a/inst/extdata/2_egf_data.csv b/inst/extdata/2_egf_data.csv deleted file mode 100644 index ce3c902..0000000 --- a/inst/extdata/2_egf_data.csv +++ /dev/null @@ -1,633 +0,0 @@ -"Protein","Label","log2FC","Tvalue","pvalue","adj.pvalue","GlobalProtein","issue" -"Q13480_Y659","This study (HEK293F TR) 1min",1.70376713958474,11.3151143700444,5.96335812410164e-08,9.49193483604991e-05,"Q13480",NA -"Q13480_T638","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 1min",2.66738501706154,10.9573017200304,8.62341831873609e-08,0.0001014462346599,"Q13480",NA -"Q13480_S650","This study (HEK293F TR) 1min",1.06751538239836,7.50672863997618,5.48699890642222e-06,0.001124729874958,"Q13480",NA -"Q13480_Y265","This study (HEK293F TR) 1min",0.586083652098868,5.60798678181296,9.69062701618218e-05,0.0071061337032964,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 1min",-1.10504046382547,-5.22069888817077,0.000184969365551,0.0106146248093664,"P84103",NA -"P84103_S148","This study (HEK293F TR) 1min",-1.10960028782523,-5.08641427759661,0.0002325701098662,0.012320066445345,"P84103",NA -"Q13480_S651","This study (HEK293F TR) 1min",1.0861403567649,5.08102358287817,0.0002347301004535,0.0123416586748211,"Q13480",NA -"Q13480_S634","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 1min",-0.567376616323225,-4.46929616032124,0.0006871401895365,0.023611113072632,"Q13480",NA -"Q13480_S266","This study (HEK293F TR) 1min",0.366472954535347,4.37076222805317,0.0008205492144159,0.0260878607518859,"Q13480",NA -"P84103_S152","This study (HEK293F TR) 1min",-0.939674889678251,-3.92826734122249,0.0018447735121165,0.042278987184565,"P84103",NA -"Q13480_S389","This study (HEK293F TR) 1min",-0.444828839203883,-3.76541404142624,0.0024975699639907,0.0505279191198013,"Q13480",NA -"P00533_Y1110","This study (HEK293F TR) 1min",0.4729517886929,3.75948401069197,0.0025253801476862,0.0508611561744001,"P00533",NA -"P21333_S2158","This study (HEK293F TR) 1min",0.532989570430392,3.71177765595511,0.0027609471504149,0.0535930036360831,"P21333",NA -"Q99808_S269","This study (HEK293F TR) 1min",0.446638577272779,3.56969435793941,0.0036043463347816,0.0621972219601596,"Q99808",NA -"P00533_S1064","This study (HEK293F TR) 1min",0.403387983895019,3.4988557092615,0.004118602371085,0.0668151288042883,"P00533",NA -"Q13480_S500","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 1min",-0.414034176552036,-3.24368387612862,0.0066713994634409,0.0864915564173852,"Q13480",NA -"Q13480_S419","This study (HEK293F TR) 1min",0.332355122205279,3.21384635543824,0.0070593860768096,0.0889962409780329,"Q13480",NA -"Q99808_S273","This study (HEK293F TR) 1min",0.348067131600315,2.85760689456946,0.0138639473793892,0.125844141931789,"Q99808",NA -"Q2TAK8_S235","This study (HEK293F TR) 1min",-0.395245276338771,-2.71933672863498,0.0179984120064434,0.143797021787113,"Q2TAK8",NA -"P84103_S158","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103",NA -"P84103_S160","This study (HEK293F TR) 1min",-0.660488572723491,-2.45426194500168,0.0295632038018416,0.18469703281771,"P84103",NA -"P21333_S2152","This study (HEK293F TR) 1min",0.235388239881175,2.19158101317147,0.0479216138099419,0.233355984429484,"P21333",NA -"P21333_S1084","This study (HEK293F TR) 1min",0.224443985987218,2.0704753520104,0.059626425674296,0.261572734421199,"P21333",NA -"Q13480_S648","This study (HEK293F TR) 1min",0.452818744361604,2.05689686498815,0.0610934625343971,0.26455777067529,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 1min",0.271657661801562,2.00737595652264,0.0667322021046199,0.276099869901749,"P00533",NA -"Q99808_S266","This study (HEK293F TR) 1min",0.421718743267295,1.97693638440734,0.0704329417495169,0.282109132661713,"Q99808",NA -"Q13480_S646","This study (HEK293F TR) 1min",-0.443829611103984,-1.92563949426819,0.0770987976152556,0.294165738271523,"Q13480",NA -"O95671_S223","This study (HEK293F TR) 1min",0.386873469280648,1.91311856681102,0.0788112010283812,0.297352889764751,"O95671",NA -"Q9ULI4_S1059","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 1min",-0.207505838772532,-1.8746523862171,0.0842910858449648,0.308635726391222,"Q9ULI4",NA -"Q9BRP8_T68","This study (HEK293F TR) 1min",-0.217853231282572,-1.69865188465098,0.114011221758164,0.359719656961002,"Q9BRP8",NA -"Q13480_S253","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 1min",0.226198718293354,1.69696320846038,0.114336674630529,0.360099225898648,"Q13480",NA -"P21333_S977","This study (HEK293F TR) 1min",-0.292568293874517,-1.68808958236406,0.116060371830274,0.36242335903682,"P21333",NA -"Q9BRP8_S55","This study (HEK293F TR) 1min",0.271474908656177,1.64304570139027,0.125167558329347,0.375524351863621,"Q9BRP8",NA -"Q13480_S418","This study (HEK293F TR) 1min",0.181323359909273,1.59674837782528,0.13517349095986,0.389512427331363,"Q13480",NA -"Q13480_S692","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 1min",-0.43616420239276,-1.56846047237182,0.141622831109669,0.398250148483752,"Q13480",NA -"Q13480_T369","This study (HEK293F TR) 1min",-0.251957076418126,-1.39200273990806,0.188089661184504,0.45798216891286,"Q13480",NA -"P00533_S695","This study (HEK293F TR) 1min",-0.168567207702282,-1.3339621543218,0.205910161052075,0.478556124383805,"P00533",NA -"O95671_T234","This study (HEK293F TR) 1min",-0.156675662315562,-1.29897946821877,0.217301232302363,0.491577787708395,"O95671",NA -"O95671_S228","This study (HEK293F TR) 1min",0.162546456010681,1.28081940357915,0.223412290527193,0.498207287543873,"O95671",NA -"P26583_T179","This study (HEK293F TR) 1min",0.333007351272826,1.24722589564544,0.235079770638176,0.51066542362367,"P26583",NA -"P26583_S181","This study (HEK293F TR) 1min",0.330986639809748,1.22712453257631,0.242289787055476,0.518593228471161,"P26583",NA -"Q9BRP8_S64","This study (HEK293F TR) 1min",0.253341533263867,1.05817473499178,0.309911354836916,0.584520502733944,"Q9BRP8",NA -"Q13480_T387","This study (HEK293F TR) 1min",-0.108576383788634,-1.00300191798484,0.334800326491917,0.607980734215025,"Q13480",NA -"Q13480_S381","This study (HEK293F TR) 1min",-0.14544164513781,-0.977526453196785,0.346769414529359,0.618941697273364,"Q13480",NA -"Q9BRP8_T112","This study (HEK293F TR) 1min",0.264359185664373,0.9218428134622,0.373986162515971,0.64218907092272,"Q9BRP8",NA -"P00533_T693","This study (HEK293F TR) 1min",-0.100727642101091,-0.897999989178961,0.386083280139053,0.652213608541932,"P00533",NA -"O95671_T249","This study (HEK293F TR) 1min",-0.0965557732785615,-0.886808870104599,0.391852935916219,0.65697319746248,"O95671",NA -"Q9BRP8_T72","This study (HEK293F TR) 1min",0.164745862786635,0.87455092473495,0.398239695546514,0.661872791180291,"Q9BRP8",NA -"P00533_S1042","This study (HEK293F TR) 1min",-0.0770847337352726,-0.738315704706098,0.473898731438467,0.722176047660012,"P00533",NA -"P84103_S5","This study (HEK293F TR) 1min",-0.125625140776993,-0.711473446111361,0.489799939092637,0.733859605703944,"P84103",NA -"P26583_S168","This study (HEK293F TR) 1min",0.261442060514788,0.687373048408072,0.50434819267248,0.742911602813247,"P26583",NA -"P00533_S991","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533",NA -"P00533_S995","This study (HEK293F TR) 1min",-0.0733371509299694,-0.676447002856423,0.511027280158964,0.74798765402726,"P00533",NA -"P84103_S138","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103",NA -"P84103_S140","This study (HEK293F TR) 1min",0.238220154780713,0.608873226544478,0.553466410502101,0.776527427376529,"P84103",NA -"Q9ULI4_S1262","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 1min",-0.0824420920906003,-0.569153322546967,0.579292491240677,0.793441060656448,"Q9ULI4",NA -"Q9ULI4_S879","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 1min",-0.0874015506707568,-0.5454323718902,0.595014219835625,0.804111446556916,"Q9ULI4",NA -"Q9BRP8_S126","This study (HEK293F TR) 1min",0.0971218156828257,0.516730648927641,0.614325294369067,0.814900075274285,"Q9BRP8",NA -"P21333_S2339","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 1min",0.056723765405346,0.459205598722164,0.65393593949727,0.837912203968262,"P21333",NA -"Q9BRP8_S131","This study (HEK293F TR) 1min",0.106411616104776,0.393890119434163,0.70027040804751,0.864225244902764,"Q9BRP8",NA -"Q13480_S401","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 1min",-0.0308020743508041,-0.323514416519758,0.751631185826267,0.892360999305536,"Q13480",NA -"Q9BRP8_S117","This study (HEK293F TR) 1min",-0.0682104620799144,-0.321055481667722,0.753450037173131,0.893447041469526,"Q9BRP8",NA -"P21333_S1459","This study (HEK293F TR) 1min",-0.0301357324557081,-0.309028903741594,0.762367953656862,0.89823761092272,"P21333",NA -"O95671_S21","This study (HEK293F TR) 1min",0.0361812416067515,0.300822870748626,0.768473367421129,0.901359831579359,"O95671",NA -"P00533_S1045","This study (HEK293F TR) 1min",0.0291655004487889,0.264608048034519,0.795605590500253,0.914135909932564,"P00533",NA -"P00533_S1039","This study (HEK293F TR) 1min",0.0318122946808987,0.217614660629752,0.831226107627063,0.930639948749166,"P00533",NA -"O95671_S239","This study (HEK293F TR) 1min",0.0231111665258367,0.173794281189501,0.864798021392135,0.944482708489422,"O95671",NA -"Q13480_S274","This study (HEK293F TR) 1min",0.0137576395281051,0.0830030475697277,0.935157887951278,0.973627044957429,"Q13480",NA -"Q13480_S367","This study (HEK293F TR) 1min",-0.0155050786974335,-0.0749903486078975,0.9414040905418,0.976574672126427,"Q13480",NA -"Q13480_T638","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 2min",2.58014812273345,10.5989428906311,1.26036128785045e-07,5.74819249384226e-05,"Q13480",NA -"Q13480_Y659","This study (HEK293F TR) 2min",1.53392426207866,10.1871482652472,1.97505081494113e-07,7.73451844140002e-05,"Q13480",NA -"Q13480_S650","This study (HEK293F TR) 2min",0.896359565618345,6.30316727411138,3.20069618421293e-05,0.0019890674032445,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 2min",-1.18411375056542,-5.59427599568965,9.91141101890676e-05,0.0042123923678373,"P84103",NA -"Q13480_Y265","This study (HEK293F TR) 2min",0.580689647874493,5.55637383495289,0.0001054971830743,0.0043863112430809,"Q13480",NA -"P84103_S148","This study (HEK293F TR) 2min",-1.19493437282168,-5.47758622758076,0.0001201889852968,0.0048168619697193,"P84103",NA -"Q13480_S651","This study (HEK293F TR) 2min",1.09278736799033,5.11211866242446,0.0002225530163094,0.0073849586306375,"Q13480",NA -"Q13480_S266","This study (HEK293F TR) 2min",0.4038022568649,4.81597244780447,0.0003716011999828,0.01040040726645,"Q13480",NA -"Q13480_S419","This study (HEK293F TR) 2min",0.476692890568188,4.6095805560344,0.0005348342755941,0.0131034397520578,"Q13480",NA -"P21333_S2158","This study (HEK293F TR) 2min",0.649109433673935,4.52044472509101,0.0006269666756207,0.0146340665445381,"P21333",NA -"Q13480_S418","This study (HEK293F TR) 2min",0.511031965638642,4.50018939952721,0.0006501138216861,0.0149829828600927,"Q13480",NA -"Q99808_S269","This study (HEK293F TR) 2min",0.491633864941996,3.9293126997034,0.0018412032290874,0.0285065864238666,"Q99808",NA -"P84103_S152","This study (HEK293F TR) 2min",-0.928196684000575,-3.8802832341715,0.0020165446810385,0.0301796676361804,"P84103",NA -"P00533_S1064","This study (HEK293F TR) 2min",0.436525530785271,3.78627997512177,0.0024021799478382,0.0337082052956873,"P00533",NA -"Q99808_S273","This study (HEK293F TR) 2min",0.450972396950133,3.70245195189826,0.0028095580813648,0.0371139948346673,"Q99808",NA -"Q13480_S500","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 2min",-0.401072173756891,-3.14213515901767,0.0080871132362839,0.0706014585547449,"Q13480",NA -"Q2TAK8_S235","This study (HEK293F TR) 2min",-0.434520604850169,-2.98955588049831,0.0107994170685152,0.08403652994981,"Q2TAK8",NA -"P21333_S2152","This study (HEK293F TR) 2min",0.32018683815949,2.98109793221604,0.010973878827176,0.0847898952963221,"P21333",NA -"Q13480_S634","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 2min",-0.374244474723817,-2.94797026487207,0.0116846038491781,0.0880368617697355,"Q13480",NA -"Q13480_S648","This study (HEK293F TR) 2min",0.633940882545705,2.87963126556173,0.013298278653527,0.0944547234203235,"Q13480",NA -"P00533_Y1110","This study (HEK293F TR) 2min",0.360094363283572,2.86238266451284,0.0137393011954488,0.0961498328009507,"P00533",NA -"P21333_S977","This study (HEK293F TR) 2min",-0.469231782120286,-2.7074201124853,0.0184068657711229,0.114576518873285,"P21333",NA -"Q13480_S389","This study (HEK293F TR) 2min",-0.312408532177169,-2.6444946236548,0.020718892461938,0.122596915174104,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 2min",0.329817671278109,2.43714113921656,0.0305182449356552,0.153714275915501,"P00533",NA -"Q13480_S253","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 2min",0.321828040318071,2.4143830168056,0.0318338048309249,0.157627325148457,"Q13480",NA -"P84103_S158","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103",NA -"P84103_S160","This study (HEK293F TR) 2min",-0.544138912066998,-2.02192661588974,0.0650273308022474,0.23647040272514,"P84103",NA -"Q9ULI4_S1059","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 2min",-0.20974078084409,-1.89484333367327,0.0813729082228433,0.267095198964531,"Q9ULI4",NA -"Q13480_S646","This study (HEK293F TR) 2min",-0.430733838418522,-1.8688209845064,0.0851514044386808,0.274651964257931,"Q13480",NA -"P84103_S5","This study (HEK293F TR) 2min",-0.326571020989046,-1.84952317876912,0.0880555036238635,0.279807922032812,"P84103",NA -"P21333_S1084","This study (HEK293F TR) 2min",0.197434612274215,1.8213163366773,0.0924615508268959,0.286984111506247,"P21333",NA -"Q13480_S274","This study (HEK293F TR) 2min",0.281472158278026,1.69818717050822,0.114100702850856,0.323691277906633,"Q13480",NA -"Q9BRP8_S64","This study (HEK293F TR) 2min",0.399533854596605,1.66880110521659,0.119886338958943,0.332745619487633,"Q9BRP8",NA -"O95671_T234","This study (HEK293F TR) 2min",-0.189141689965618,-1.56815148069831,0.141694719619396,0.366645882964786,"O95671",NA -"Q9BRP8_T72","This study (HEK293F TR) 2min",0.291158427826943,1.54561011726411,0.147024551772785,0.374806075800659,"Q9BRP8",NA -"P84103_S138","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103",NA -"P84103_S140","This study (HEK293F TR) 2min",0.583711084640775,1.49192267884372,0.160414746470895,0.39303212073216,"P84103",NA -"Q13480_S367","This study (HEK293F TR) 2min",0.306902684123715,1.48433553419799,0.162388208749263,0.395807221118104,"Q13480",NA -"Q13480_T369","This study (HEK293F TR) 2min",-0.260020218164765,-1.43654967450165,0.175294781386693,0.412690032824256,"Q13480",NA -"Q9ULI4_S1262","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 2min",0.207243244551806,1.43073978620592,0.176921135552706,0.414904975759281,"Q9ULI4",NA -"P00533_S1045","This study (HEK293F TR) 2min",0.150452844596394,1.36500430019351,0.196214317150538,0.438566907553858,"P00533",NA -"Q9BRP8_T68","This study (HEK293F TR) 2min",-0.16579615527638,-1.29275085785997,0.219381860614282,0.466298693591792,"Q9BRP8",NA -"P00533_S1042","This study (HEK293F TR) 2min",0.131773109895089,1.26211964132385,0.229848400038462,0.47823367861317,"P00533",NA -"Q9BRP8_S117","This study (HEK293F TR) 2min",-0.198247036676712,-0.933116356474329,0.368358889085155,0.613409357231576,"Q9BRP8",NA -"P26583_T179","This study (HEK293F TR) 2min",0.247496358028005,0.926958115580953,0.371425453330428,0.616125033041865,"P26583",NA -"P26583_S168","This study (HEK293F TR) 2min",-0.343340232494674,-0.902696458964186,0.38367941486351,0.627236966756459,"P26583",NA -"O95671_T249","This study (HEK293F TR) 2min",0.0821012646494896,0.754052577756511,0.464726100044519,0.693298187888527,"O95671",NA -"P00533_S695","This study (HEK293F TR) 2min",-0.0908929544419194,-0.719284390912856,0.485139735829573,0.708988059738136,"P00533",NA -"P26583_S181","This study (HEK293F TR) 2min",0.174684425506943,0.647638056091278,0.528884652253245,0.741153486016639,"P26583",NA -"O95671_S239","This study (HEK293F TR) 2min",0.080256664347921,0.603524243374771,0.556907186371671,0.761985173089798,"O95671",NA -"P21333_S2339","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 2min",-0.0719459098767192,-0.582436028082085,0.570585520715923,0.771005738322536,"P21333",NA -"P00533_T693","This study (HEK293F TR) 2min",0.0637686410983846,0.568505703318612,0.579718799597352,0.777224259072107,"P00533",NA -"Q9ULI4_S879","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 2min",0.0864256271847185,0.539342087934273,0.599085813853705,0.790075940477973,"Q9ULI4",NA -"Q13480_S401","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 2min",0.0504748917913406,0.530138164748219,0.605265789841195,0.793349179655574,"Q13480",NA -"P00533_S1039","This study (HEK293F TR) 2min",0.07711090241499,0.527483572883148,0.607054163964584,0.794490308538127,"P00533",NA -"P21333_S1459","This study (HEK293F TR) 2min",0.0513012072480769,0.526071694450907,0.60800641233835,0.79514604834379,"P21333",NA -"Q99808_S266","This study (HEK293F TR) 2min",0.107278422718196,0.502900619238089,0.623740056153892,0.805258346689767,"Q99808",NA -"Q9BRP8_S131","This study (HEK293F TR) 2min",-0.100860850372776,-0.373343567683875,0.715120630373446,0.860345181267785,"Q9BRP8",NA -"O95671_S223","This study (HEK293F TR) 2min",-0.053394822381362,-0.264041435199212,0.796032418590052,0.90453729804921,"O95671",NA -"Q9BRP8_T112","This study (HEK293F TR) 2min",0.0741987887600501,0.258737444716187,0.800031208816391,0.90621850559117,"Q9BRP8",NA -"O95671_S228","This study (HEK293F TR) 2min",0.024946759661848,0.196573303506667,0.847307701707302,0.93027900165439,"O95671",NA -"Q13480_S692","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 2min",-0.0507327724056665,-0.182436678057476,0.858152858871583,0.934963522354203,"Q13480",NA -"O95671_S21","This study (HEK293F TR) 2min",-0.0211222359114024,-0.17561729120739,0.863395391360773,0.937534798880188,"O95671",NA -"Q9BRP8_S55","This study (HEK293F TR) 2min",0.0261460947034706,0.15824382711217,0.876781556764774,0.944422108219874,"Q9BRP8",NA -"Q13480_T387","This study (HEK293F TR) 2min",-0.0148992409276118,-0.137635521698756,0.892711300521128,0.952203158960805,"Q13480",NA -"P00533_S991","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533",NA -"P00533_S995","This study (HEK293F TR) 2min",0.012353197341385,0.113943386282532,0.91108460914222,0.961084854785207,"P00533",NA -"Q13480_S381","This study (HEK293F TR) 2min",0.0123554922163631,0.0830423808278424,0.935127236886922,0.97237231049062,"Q13480",NA -"Q9BRP8_S126","This study (HEK293F TR) 2min",0.0025408843401635,0.0135186189087582,0.989426489479751,0.995844391033133,"Q9BRP8",NA -"Q13480_T638","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 3min",2.03188022284489,8.34672329576199,1.78294837900624e-06,0.0001994921130732,"Q13480",NA -"Q13480_Y659","This study (HEK293F TR) 3min",1.21276599288191,8.0542614038816,2.61257827330921e-06,0.0002647072889936,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 3min",-1.47891469175969,-6.98704575960999,1.14811459927821e-05,0.0007134939379368,"P84103",NA -"P84103_S148","This study (HEK293F TR) 3min",-1.49208154426403,-6.83971061773762,1.42438692967131e-05,0.0008172502822182,"P84103",NA -"Q13480_S418","This study (HEK293F TR) 3min",0.67591857726473,5.95219442398075,5.55243504261198e-05,0.0021139953881759,"Q13480",NA -"Q13480_Y265","This study (HEK293F TR) 3min",0.573283167282483,5.48550435222461,0.0001186197335806,0.0036444916027821,"Q13480",NA -"P84103_S152","This study (HEK293F TR) 3min",-1.27252645747826,-5.31973789941863,0.0001564738994305,0.0044018766360321,"P84103",NA -"Q13480_S650","This study (HEK293F TR) 3min",0.70013849495635,4.9233479710903,0.0003081487892753,0.0071755477627244,"Q13480",NA -"Q13480_S266","This study (HEK293F TR) 3min",0.400521317427366,4.77684212184553,0.0003979930144865,0.0086283696457855,"Q13480",NA -"Q13480_S419","This study (HEK293F TR) 3min",0.464803885054938,4.49461486275724,0.0006566386574765,0.0121944001790981,"Q13480",NA -"P21333_S2158","This study (HEK293F TR) 3min",0.602485166897726,4.19574998199223,0.0011276606624867,0.0175804613172465,"P21333",NA -"Q99808_S269","This study (HEK293F TR) 3min",0.511424131815868,4.0874835510283,0.0013750662085058,0.0200065180847649,"Q99808",NA -"Q13480_S651","This study (HEK293F TR) 3min",0.861180623684671,4.0286497327957,0.0015323453317053,0.0215127806369725,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 3min",0.504292168698397,3.7263958166852,0.0026864706403833,0.0314165887194938,"P00533",NA -"P00533_S1042","This study (HEK293F TR) 3min",0.297204100764812,2.84661364792789,0.0141551315696634,0.0928798746066363,"P00533",NA -"Q13480_S500","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 3min",-0.360584098375242,-2.82493787258924,0.0147470815980989,0.0954815965483526,"Q13480",NA -"Q13480_S648","This study (HEK293F TR) 3min",0.61957213253876,2.81436224299785,0.0150446979398548,0.0967519439370365,"Q13480",NA -"P21333_S2152","This study (HEK293F TR) 3min",0.297910905400229,2.77369797327789,0.0162452281908146,0.101415523104677,"P21333",NA -"Q13480_S634","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 3min",-0.34081227931409,-2.68462070432077,0.0192138116134754,0.11211768051605,"Q13480",NA -"Q99808_S273","This study (HEK293F TR) 3min",0.316701505231324,2.6000972878668,0.0225184300074042,0.12369218433211,"Q99808",NA -"Q2TAK8_S235","This study (HEK293F TR) 3min",-0.366101986456474,-2.51882726447567,0.026214385895867,0.13562927998949,"Q2TAK8",NA -"P00533_S1064","This study (HEK293F TR) 3min",0.282900441162347,2.4537860898977,0.0295893548436515,0.145978585967694,"P00533",NA -"P00533_T693","This study (HEK293F TR) 3min",0.265319395778178,2.36535681336266,0.0348552902087417,0.160758176136729,"P00533",NA -"P26583_T179","This study (HEK293F TR) 3min",0.612900233528975,2.29552002315468,0.0396366690395622,0.173481258839896,"P26583",NA -"P00533_S1045","This study (HEK293F TR) 3min",0.252779247922989,2.29337478689872,0.0397930074469168,0.173823155670434,"P00533",NA -"P21333_S1084","This study (HEK293F TR) 3min",0.241630363044717,2.22901811684053,0.0447648057798837,0.186446341824665,"P21333",NA -"P00533_Y1110","This study (HEK293F TR) 3min",0.278752634772754,2.21579894276898,0.0458563654579875,0.189188180668351,"P00533",NA -"O95671_T234","This study (HEK293F TR) 3min",-0.257734607186693,-2.13684728078976,0.0529161454021445,0.205325352168615,"O95671",NA -"P26583_S181","This study (HEK293F TR) 3min",0.564021512901842,2.09109538614759,0.0574611678902723,0.21479593994013,"P26583",NA -"P21333_S977","This study (HEK293F TR) 3min",-0.359691674572552,-2.07538472699108,0.0591041226527984,0.218914181358432,"P21333",NA -"P84103_S5","This study (HEK293F TR) 3min",-0.35624792552462,-2.01759725541692,0.0655303378255179,0.232673487754517,"P84103",NA -"Q9BRP8_S64","This study (HEK293F TR) 3min",0.467693969457141,1.95349706702888,0.0734103020374468,0.248808622047895,"Q9BRP8",NA -"Q13480_S646","This study (HEK293F TR) 3min",-0.42985113345325,-1.86499120050734,0.0857207449212001,0.272445650025557,"Q13480",NA -"Q9BRP8_T68","This study (HEK293F TR) 3min",-0.237984925053956,-1.85562334366792,0.0871279499819063,0.275320723179913,"Q9BRP8",NA -"Q9BRP8_T72","This study (HEK293F TR) 3min",0.335475150315677,1.78086476935779,0.0991269222995888,0.2959298865747,"Q9BRP8",NA -"Q9ULI4_S1059","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 3min",-0.196339176008665,-1.773770352631,0.100339315140611,0.297866856555147,"Q9ULI4",NA -"Q9ULI4_S879","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 3min",0.26194156535569,1.63465531437519,0.126931460432201,0.341057452194843,"Q9ULI4",NA -"Q13480_S253","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 3min",0.212653550367973,1.59534613567051,0.13548709168125,0.354227709681976,"Q13480",NA -"Q13480_S274","This study (HEK293F TR) 3min",0.261948487877737,1.58039631404186,0.138869871666238,0.359370971056622,"Q13480",NA -"P84103_S158","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103",NA -"P84103_S160","This study (HEK293F TR) 3min",-0.362589162304975,-1.34731896881384,0.201691271281674,0.444943550715413,"P84103",NA -"Q9ULI4_S1262","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 3min",0.194718492657573,1.34427298297578,0.202647103020215,0.446164028676301,"Q9ULI4",NA -"P21333_S1459","This study (HEK293F TR) 3min",0.128046899040161,1.31306557410044,0.212654616503816,0.458170323209666,"P21333",NA -"P84103_S138","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103",NA -"P84103_S140","This study (HEK293F TR) 3min",0.49655303418017,1.26915310062677,0.227410433793279,0.475361209970585,"P84103",NA -"Q9BRP8_S126","This study (HEK293F TR) 3min",0.233272080040749,1.241109759416,0.237255274834602,0.48663121029903,"Q9BRP8",NA -"P00533_S1039","This study (HEK293F TR) 3min",0.16484935201419,1.1276657705281,0.280551339632174,0.532780847148919,"P00533",NA -"Q13480_S389","This study (HEK293F TR) 3min",-0.129457523956244,-1.09583987258005,0.293725108851004,0.546812980420113,"Q13480",NA -"Q99808_S266","This study (HEK293F TR) 3min",0.227100806241164,1.06460491489665,0.307102055594803,0.560031662695483,"Q99808",NA -"Q13480_S367","This study (HEK293F TR) 3min",0.210024359757735,1.01578329666847,0.328909048077413,0.581941195531104,"Q13480",NA -"Q13480_T387","This study (HEK293F TR) 3min",0.0993114434855506,0.9174146791236,0.376212760642871,0.624149897397659,"Q13480",NA -"O95671_S223","This study (HEK293F TR) 3min",0.181459919886247,0.897333028578877,0.386425496565956,0.632902171189564,"O95671",NA -"P21333_S2339","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 3min",-0.107508201325413,-0.870329527745458,0.400455393547661,0.644689452698438,"P21333",NA -"Q9BRP8_T112","This study (HEK293F TR) 3min",0.244564227534452,0.85281612218611,0.409736346758745,0.653017716258668,"Q9BRP8",NA -"Q13480_T369","This study (HEK293F TR) 3min",-0.152031430268384,-0.839937383360218,0.416652207970843,0.658684797446664,"Q13480",NA -"Q13480_S692","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 3min",0.211340025692468,0.75998551625791,0.461296900669859,0.692070467986762,"Q13480",NA -"O95671_S228","This study (HEK293F TR) 3min",0.0931621164762965,0.734090729443533,0.476380289409323,0.703636471156852,"O95671",NA -"P00533_S695","This study (HEK293F TR) 3min",-0.0904038576144969,-0.715413907047852,0.487445586040152,0.711230850184818,"P00533",NA -"Q9BRP8_S55","This study (HEK293F TR) 3min",0.113338480966059,0.685957700014308,0.505210471170108,0.724000517658459,"Q9BRP8",NA -"O95671_T249","This study (HEK293F TR) 3min",-0.0727469521861507,-0.668138634089087,0.516140753807215,0.732110650964711,"O95671",NA -"Q9BRP8_S117","This study (HEK293F TR) 3min",-0.127808572587547,-0.60157403398447,0.558164581145576,0.761404260960582,"Q9BRP8",NA -"P00533_S991","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533",NA -"P00533_S995","This study (HEK293F TR) 3min",0.064489573742863,0.594838745719818,0.562519043584984,0.764533181865139,"P00533",NA -"Q9BRP8_S131","This study (HEK293F TR) 3min",0.106617881560162,0.394653625598538,0.699721002291539,0.851916261416113,"Q9BRP8",NA -"O95671_S239","This study (HEK293F TR) 3min",0.0381413204037883,0.286819938568845,0.778928903207655,0.894995549342756,"O95671",NA -"P26583_S168","This study (HEK293F TR) 3min",0.076170004265748,0.2002631402396,0.844482219885772,0.929597868544003,"P26583",NA -"O95671_S21","This study (HEK293F TR) 3min",-0.015083524334118,-0.125409435654896,0.902185294547149,0.956937827880533,"O95671",NA -"Q13480_S381","This study (HEK293F TR) 3min",0.0149134770863756,0.100234828527022,0.921740798333989,0.965375681864678,"Q13480",NA -"Q13480_S401","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 3min",0.0034139734610523,0.0358569887108089,0.971960226040614,0.987417705769837,"Q13480",NA -"Q13480_Y659","This study (HEK293F TR) 5min",0.96149464558723,6.38550986706809,2.81957799208171e-05,0.0010275216902753,"Q13480",NA -"Q13480_S418","This study (HEK293F TR) 5min",0.687774707113656,6.05660047576046,4.70479376330071e-05,0.0014777125312701,"Q13480",NA -"Q13480_T638","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 5min",1.437850082333,5.90651783657737,5.97262550258393e-05,0.0017404938458585,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 5min",-0.987065216025538,-4.66333174625761,0.0004861886098434,0.0078168799529186,"P84103",NA -"P84103_S148","This study (HEK293F TR) 5min",-0.990302361639888,-4.53955187886192,0.0006059155595428,0.0091351796830444,"P84103",NA -"Q13480_S389","This study (HEK293F TR) 5min",-0.524029613808988,-4.43583754482056,0.0007297187629433,0.0104215666917261,"Q13480",NA -"Q13480_S266","This study (HEK293F TR) 5min",0.35869793972493,4.27803303580211,0.0009706780466285,0.0128419139449146,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 5min",0.51668972589909,3.81800581612068,0.0022642300532271,0.0236302672411981,"P00533",NA -"Q9BRP8_T68","This study (HEK293F TR) 5min",-0.449612949618791,-3.50573585591129,0.0040655454290081,0.0357014073862877,"Q9BRP8",NA -"Q13480_T387","This study (HEK293F TR) 5min",-0.36363813432121,-3.35919961090824,0.005361202267745,0.0432958761861446,"Q13480",NA -"P84103_S152","This study (HEK293F TR) 5min",-0.774282656761766,-3.23685277412668,0.0067582903348887,0.0505800576360409,"P84103",NA -"P21333_S977","This study (HEK293F TR) 5min",-0.554994186821087,-3.20226054791542,0.0072160818400963,0.052954063985109,"P21333",NA -"P26583_T179","This study (HEK293F TR) 5min",0.847039146571802,3.17244996001376,0.0076355062981983,0.0549824951255408,"P26583",NA -"Q13480_S500","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 5min",-0.401929663494517,-3.14885302385445,0.0079847803672309,0.056516741572904,"Q13480",NA -"Q13480_S634","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 5min",-0.391350170101576,-3.08271395446377,0.0090514014492758,0.0611964923289129,"Q13480",NA -"Q99808_S269","This study (HEK293F TR) 5min",0.384654730496244,3.07429740975676,0.0091969808085241,0.061910862760574,"Q99808",NA -"Q13480_S651","This study (HEK293F TR) 5min",0.645065267756046,3.01765035941256,0.0102394897843786,0.0662793053168823,"Q13480",NA -"P26583_S181","This study (HEK293F TR) 5min",0.808191366960536,2.9963488979003,0.0106612983882562,0.0679751505998564,"P26583",NA -"Q13480_S650","This study (HEK293F TR) 5min",0.394430618061241,2.77362150082717,0.0162475724584144,0.0898670516551446,"Q13480",NA -"Q13480_S253","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 5min",0.362587840306217,2.72016671658053,0.0179702968370236,0.0956845102869598,"Q13480",NA -"Q2TAK8_S235","This study (HEK293F TR) 5min",-0.394616259132977,-2.71500901191563,0.0181457103876402,0.0961929294861768,"Q2TAK8",NA -"P00533_S1042","This study (HEK293F TR) 5min",0.258191118952979,2.47294825708657,0.0285537166113875,0.129105723814067,"P00533",NA -"P84103_S5","This study (HEK293F TR) 5min",-0.435111633104363,-2.46423901404772,0.0290200076088459,0.130207319686338,"P84103",NA -"P00533_S991","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533",NA -"P00533_S995","This study (HEK293F TR) 5min",0.264468242662439,2.43940141975988,0.0303904796284101,0.134241037466498,"P00533",NA -"P84103_S158","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103",NA -"P84103_S160","This study (HEK293F TR) 5min",-0.647340803922905,-2.40540709730022,0.0323675124559147,0.139509972668781,"P84103",NA -"Q13480_Y265","This study (HEK293F TR) 5min",0.229185052774778,2.1929749139859,0.0478004054038426,0.178615327818387,"Q13480",NA -"P21333_S2158","This study (HEK293F TR) 5min",0.310716541283021,2.16385231391802,0.0503937596017678,0.184191057780002,"P21333",NA -"P00533_S1045","This study (HEK293F TR) 5min",0.219845820743592,1.99458170099474,0.0682652830941085,0.221518733638866,"P00533",NA -"P21333_S1084","This study (HEK293F TR) 5min",-0.215233156425089,-1.98550628725211,0.0693723677053264,0.22360397557112,"P21333",NA -"O95671_T234","This study (HEK293F TR) 5min",-0.235750583933722,-1.9545803325452,0.0732701934695059,0.231368946394844,"O95671",NA -"Q13480_S419","This study (HEK293F TR) 5min",0.199154802880692,1.92581035959122,0.0770756664195951,0.238815987952407,"Q13480",NA -"Q9ULI4_S1262","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 5min",0.26519193411942,1.83079864410589,0.0909586613720378,0.26422500874867,"Q9ULI4",NA -"P21333_S1459","This study (HEK293F TR) 5min",-0.178003878770223,-1.82535279668287,0.0918190814556798,0.265336980162086,"P21333",NA -"Q13480_S274","This study (HEK293F TR) 5min",0.239761611121315,1.44653771256631,0.172528113502483,0.386957032025137,"Q13480",NA -"Q13480_S648","This study (HEK293F TR) 5min",0.315398720212013,1.43267620190939,0.176377680597204,0.392416083222465,"Q13480",NA -"O95671_S21","This study (HEK293F TR) 5min",-0.163361915657431,-1.35824527453179,0.198292917102341,0.418851344545411,"O95671",NA -"Q9BRP8_S126","This study (HEK293F TR) 5min",0.245227525123361,1.30471796991252,0.215398448877986,0.438918259879681,"Q9BRP8",NA -"P26583_S168","This study (HEK293F TR) 5min",0.47404113706089,1.24633006950288,0.235397421024411,0.46361035548845,"P26583",NA -"Q9ULI4_S879","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 5min",-0.190290116106853,-1.18751199010647,0.257007716954382,0.486489203940852,"Q9ULI4",NA -"P00533_T693","This study (HEK293F TR) 5min",0.132774787634869,1.18370444668692,0.25845840766427,0.488028626499306,"P00533",NA -"P00533_S1039","This study (HEK293F TR) 5min",0.165469813249521,1.1319100874664,0.278829016682789,0.508639156695712,"P00533",NA -"Q13480_S692","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 5min",-0.308513532270638,-1.10942456511496,0.288045910228741,0.518674585947806,"Q13480",NA -"P00533_Y1110","This study (HEK293F TR) 5min",0.137000797900502,1.08901651600141,0.296609311793398,0.528055753781991,"P00533",NA -"Q9ULI4_S1059","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 5min",-0.119350021135356,-1.07823376556512,0.301210412044054,0.532568689929641,"Q9ULI4",NA -"Q9BRP8_T112","This study (HEK293F TR) 5min",0.279419234387438,0.974358475631675,0.348278971297888,0.578807886905782,"Q9BRP8",NA -"Q13480_S401","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 5min",-0.0917226221741422,-0.963363384438918,0.353554536564583,0.583459581863084,"Q13480",NA -"O95671_S228","This study (HEK293F TR) 5min",0.117677154423358,0.927262189792152,0.371273619860154,0.599105890498014,"O95671",NA -"P00533_S1064","This study (HEK293F TR) 5min",-0.100032805064227,-0.867651901112409,0.401865112469493,0.627669861549287,"P00533",NA -"Q13480_S367","This study (HEK293F TR) 5min",0.169059921108289,0.817658695381709,0.428797266488978,0.650364201811877,"Q13480",NA -"Q9BRP8_T72","This study (HEK293F TR) 5min",-0.15158073751136,-0.804664056020953,0.435986978162188,0.656425674076753,"Q9BRP8",NA -"Q9BRP8_S131","This study (HEK293F TR) 5min",0.210047616710483,0.777506101885433,0.451263200521798,0.668654375007106,"Q9BRP8",NA -"O95671_S223","This study (HEK293F TR) 5min",0.13702643262045,0.677606073317719,0.510316286685563,0.713592442937221,"O95671",NA -"O95671_S239","This study (HEK293F TR) 5min",0.0899607512350328,0.676498266700709,0.51099582176578,0.714138859632162,"O95671",NA -"Q13480_S646","This study (HEK293F TR) 5min",-0.114557429494987,-0.497029276727792,0.627758068696753,0.797448499966613,"Q13480",NA -"Q9BRP8_S117","This study (HEK293F TR) 5min",0.0989010053581047,0.465510846055656,0.649537420188096,0.81151883638885,"Q9BRP8",NA -"Q9BRP8_S55","This study (HEK293F TR) 5min",0.0615826623552617,0.372716319028694,0.715575929974441,0.851919681337858,"Q9BRP8",NA -"P21333_S2152","This study (HEK293F TR) 5min",0.0397315284351869,0.369920193917902,0.717606927778133,0.853209688972964,"P21333",NA -"Q13480_S381","This study (HEK293F TR) 5min",0.0516821846361104,0.347360637958466,0.734074214966415,0.863572880631665,"Q13480",NA -"Q9BRP8_S64","This study (HEK293F TR) 5min",-0.0748100203406814,-0.312471754744925,0.759811331094997,0.878046889710519,"Q9BRP8",NA -"P84103_S138","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103",NA -"P84103_S140","This study (HEK293F TR) 5min",0.117900926626376,0.301346112690032,0.768083580424448,0.882472538451662,"P84103",NA -"Q99808_S273","This study (HEK293F TR) 5min",-0.0356433470307919,-0.292629395233108,0.774585578182977,0.886125757773408,"Q99808",NA -"Q13480_T369","This study (HEK293F TR) 5min",-0.0517394563116866,-0.285848153070726,0.77965620173143,0.889364863636702,"Q13480",NA -"P21333_S2339","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 5min",0.0311242605508503,0.251965549164528,0.805145240608405,0.903387920993112,"P21333",NA -"Q99808_S266","This study (HEK293F TR) 5min",0.0406590944931011,0.190602017443461,0.851884854642904,0.928673627082712,"Q99808",NA -"O95671_T249","This study (HEK293F TR) 5min",0.0191085886093507,0.175501322174325,0.863484603973436,0.934855783819616,"O95671",NA -"P00533_S695","This study (HEK293F TR) 5min",-0.0168234424441156,-0.133132866301596,0.896198489905016,0.95215300248871,"P00533",NA -"Q13480_S418","This study (HEK293F TR) 7min",1.1037995737909,9.72014957023043,3.34652817160609e-07,4.32857234845081e-05,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 7min",-1.36644568044178,-6.45569250915216,2.53263208550614e-05,0.0007680864474193,"P84103",NA -"P84103_S148","This study (HEK293F TR) 7min",-1.37579563187301,-6.30665530803837,3.18349312216953e-05,0.0009070452183221,"P84103",NA -"Q13480_Y659","This study (HEK293F TR) 7min",0.792176512639632,5.26102871309338,0.0001727592939515,0.0030250736236118,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 7min",0.697451166751218,5.15371697488788,0.0002072876990016,0.0034426781998778,"P00533",NA -"Q13480_S253","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 7min",0.684561296238153,5.13564065445114,0.0002137818781161,0.0035197328034317,"Q13480",NA -"P84103_S152","This study (HEK293F TR) 7min",-1.21143888805105,-5.06436414561133,0.0002415390204995,0.0038620414415131,"P84103",NA -"Q13480_T638","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 7min",1.1465838145614,4.71003050669184,0.0004476659752284,0.0061036701342077,"Q13480",NA -"Q13480_S419","This study (HEK293F TR) 7min",0.483808265698794,4.67838564102704,0.0004734069385915,0.0063385423968833,"Q13480",NA -"Q13480_S266","This study (HEK293F TR) 7min",0.375216829491048,4.47504659040579,0.0006800859268684,0.0082694627623141,"Q13480",NA -"P00533_S1042","This study (HEK293F TR) 7min",0.442948339454276,4.24254842101028,0.0010354069477496,0.011206423562801,"P00533",NA -"P00533_S1045","This study (HEK293F TR) 7min",0.45594435889104,4.13661843486446,0.0012564974840463,0.0127912843728693,"P00533",NA -"Q13480_S634","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 7min",-0.459528253752587,-3.61976119735884,0.0032806952082911,0.0253018940045595,"Q13480",NA -"P21333_S977","This study (HEK293F TR) 7min",-0.600796400495767,-3.46653470670927,0.0043774091151049,0.0307596835611823,"P21333",NA -"Q13480_S401","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 7min",0.313361252097451,3.29123556672283,0.006096903315974,0.0388054092398694,"Q13480",NA -"Q9BRP8_T68","This study (HEK293F TR) 7min",-0.401600997432656,-3.13137559241367,0.008253757372613,0.0478056726253567,"Q9BRP8",NA -"Q13480_S389","This study (HEK293F TR) 7min",-0.355636325653229,-3.01041186235259,0.0103809274155062,0.0557446080659887,"Q13480",NA -"Q99808_S269","This study (HEK293F TR) 7min",0.374719370584309,2.99489047979945,0.0106908026195154,0.0568321777262176,"Q99808",NA -"P00533_S1039","This study (HEK293F TR) 7min",0.397147945491421,2.71672371467789,0.0180872077875341,0.0819442912050481,"P00533",NA -"Q13480_S500","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 7min",-0.332945677042908,-2.60840912517055,0.0221703235076739,0.0939680077087782,"Q13480",NA -"P21333_S2158","This study (HEK293F TR) 7min",0.361187229992353,2.51533381566802,0.0263857888347521,0.105472616532176,"P21333",NA -"Q13480_S651","This study (HEK293F TR) 7min",0.505287784467303,2.3637637005457,0.0349579424770295,0.127069626686521,"Q13480",NA -"P26583_T179","This study (HEK293F TR) 7min",0.583606449226995,2.18580482851037,0.0484269814361419,0.15820527972746,"P26583",NA -"P26583_S181","This study (HEK293F TR) 7min",0.576724837670714,2.1381926390099,0.0527877313539815,0.166799610776491,"P26583",NA -"Q13480_S650","This study (HEK293F TR) 7min",0.302522365950496,2.12732607525697,0.0538333383565838,0.168784997987855,"Q13480",NA -"P84103_S158","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103",NA -"P84103_S160","This study (HEK293F TR) 7min",-0.568661195312959,-2.11304720307408,0.0552367670725073,0.17189290581355,"P84103",NA -"Q13480_Y265","This study (HEK293F TR) 7min",0.220715253501599,2.11193098416719,0.0553479061411364,0.172044332412882,"Q13480",NA -"P00533_T693","This study (HEK293F TR) 7min",0.230349261636213,2.05359353343247,0.0614553946063972,0.184228039858047,"P00533",NA -"P84103_S5","This study (HEK293F TR) 7min",-0.345894897394597,-1.95896325464448,0.0727058111844041,0.206215027951489,"P84103",NA -"P00533_S991","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533",NA -"P00533_S995","This study (HEK293F TR) 7min",0.208074738899416,1.91923918114911,0.0779698336101451,0.215992898036458,"P00533",NA -"Q9ULI4_S1059","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 7min",-0.210698066968993,-1.90349166245744,0.0801513306160289,0.219424495483062,"Q9ULI4",NA -"O95671_T234","This study (HEK293F TR) 7min",-0.216271417990969,-1.79308086132101,0.0970699753118389,0.248816820353874,"O95671",NA -"Q2TAK8_S235","This study (HEK293F TR) 7min",-0.24611393744777,-1.6932945428981,0.115046552384683,0.277611651619465,"Q2TAK8",NA -"Q13480_T387","This study (HEK293F TR) 7min",-0.176926346528642,-1.63440205612056,0.126985038563461,0.29511123705805,"Q13480",NA -"Q13480_S646","This study (HEK293F TR) 7min",-0.373749564385765,-1.62158383339173,0.129722708424391,0.29928964332467,"Q13480",NA -"Q13480_S692","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 7min",-0.428962450080581,-1.54256273988598,0.147758142552608,0.324671803881963,"Q13480",NA -"P21333_S2152","This study (HEK293F TR) 7min",0.153280640767058,1.42711862819238,0.177941170624865,0.364760549297608,"P21333",NA -"Q9ULI4_S1262","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 7min",0.20643213098392,1.42514012260667,0.178500563693895,0.365418125971209,"Q9ULI4",NA -"Q13480_S274","This study (HEK293F TR) 7min",0.209465361581399,1.26375337397328,0.229280255517313,0.427468285649164,"Q13480",NA -"P00533_Y1110","This study (HEK293F TR) 7min",0.152405669772214,1.21146952468655,0.248025052922553,0.448616987841922,"P00533",NA -"Q9BRP8_S126","This study (HEK293F TR) 7min",0.221764565592352,1.17988473631837,0.25992012882842,0.462220741585782,"Q9BRP8",NA -"P26583_S168","This study (HEK293F TR) 7min",0.442062866036459,1.16225407349213,0.266750341608761,0.469906075716093,"P26583",NA -"Q13480_S648","This study (HEK293F TR) 7min",0.231929312793405,1.05352236921237,0.311955791963061,0.517674603234076,"Q13480",NA -"O95671_T249","This study (HEK293F TR) 7min",-0.11309753638146,-1.03873538623842,0.318520007128247,0.524373265354362,"O95671",NA -"Q9BRP8_T112","This study (HEK293F TR) 7min",0.291082861844382,1.01503052991669,0.329253915581703,0.535177255873372,"Q9BRP8",NA -"P21333_S1084","This study (HEK293F TR) 7min",-0.108606213194125,-1.00188243629941,0.335319941974884,0.541342894515348,"P21333",NA -"Q99808_S273","This study (HEK293F TR) 7min",-0.119598613714306,-0.981896284086366,0.344694853164643,0.550560650271822,"Q99808",NA -"P00533_S1064","This study (HEK293F TR) 7min",-0.110747413479764,-0.960586917334802,0.354895645676274,0.560282061897437,"P00533",NA -"Q9BRP8_S131","This study (HEK293F TR) 7min",0.235992512154962,0.873542966462983,0.398767990853891,0.601557072923401,"Q9BRP8",NA -"P00533_S695","This study (HEK293F TR) 7min",-0.0890833414201246,-0.704963958617947,0.493704257750478,0.682740091089987,"P00533",NA -"O95671_S223","This study (HEK293F TR) 7min",0.139082224187964,0.687772118109102,0.504105223441676,0.690868238103636,"O95671",NA -"Q9ULI4_S879","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 7min",-0.0997867462721959,-0.622722609436033,0.544612334263688,0.721436989169459,"Q9ULI4",NA -"Q9BRP8_S55","This study (HEK293F TR) 7min",0.0950606833069915,0.575335112375293,0.575231542512794,0.744759881746609,"Q9BRP8",NA -"Q9BRP8_T72","This study (HEK293F TR) 7min",-0.0651972218391101,-0.346098467573591,0.734999697278246,0.852100231727844,"Q9BRP8",NA -"O95671_S239","This study (HEK293F TR) 7min",0.0412077495785574,0.30987926158708,0.761736215153427,0.868171944370563,"O95671",NA -"Q9BRP8_S117","This study (HEK293F TR) 7min",0.057739839616218,0.271771975355971,0.790214991764914,0.8855885516059,"Q9BRP8",NA -"O95671_S228","This study (HEK293F TR) 7min",0.0338566919163412,0.266781011482661,0.793969340478379,0.887538324170831,"O95671",NA -"P21333_S1459","This study (HEK293F TR) 7min",-0.0239298948281394,-0.245390722666535,0.810119427622841,0.896733089700785,"P21333",NA -"Q99808_S266","This study (HEK293F TR) 7min",-0.0506435705627694,-0.237407321538899,0.816170853856404,0.900644491598715,"Q99808",NA -"Q13480_S381","This study (HEK293F TR) 7min",0.0326430791622023,0.219397087846569,0.829867354092036,0.909416972496865,"Q13480",NA -"O95671_S21","This study (HEK293F TR) 7min",0.0259075469099361,0.215403957669805,0.832912125216958,0.911191534998678,"O95671",NA -"Q13480_T369","This study (HEK293F TR) 7min",0.0283255991048836,0.156492177652125,0.878133467775698,0.93558481852733,"Q13480",NA -"Q13480_S367","This study (HEK293F TR) 7min",0.0251815521598963,0.121790634656447,0.904992577603532,0.950267622743852,"Q13480",NA -"P21333_S2339","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 7min",0.0132056028323805,0.10690557497015,0.91655326398309,0.956478482187387,"P21333",NA -"Q9BRP8_S64","This study (HEK293F TR) 7min",0.0154904149712216,0.0647014547749363,0.949430555085256,0.974015212026464,"Q9BRP8",NA -"P84103_S138","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103",NA -"P84103_S140","This study (HEK293F TR) 7min",-0.0188699816600141,-0.0482302877720159,0.962291499102728,0.980500992396494,"P84103",NA -"Q13480_S418","This study (HEK293F TR) 9min",1.34281990556529,11.8249822140717,3.58418773652344e-08,1.07838155782486e-05,"Q13480",NA -"P00533_S1042","This study (HEK293F TR) 9min",0.86346067692395,8.27020536074574,1.96855408160295e-06,0.000110505533616,"P00533",NA -"Q13480_S401","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 9min",0.759174494439613,7.97361537434577,2.90783771447038e-06,0.0001460541696123,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 9min",1.02430571177988,7.56896251082995,5.03405987618794e-06,0.0002175092963841,"P00533",NA -"P00533_S1045","This study (HEK293F TR) 9min",0.786826367251601,7.13859134857336,9.22449929705528e-06,0.0003262827733437,"P00533",NA -"Q13480_S253","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 9min",0.904313232915152,6.78423952513599,1.54598292648045e-05,0.0004755825158436,"Q13480",NA -"Q13480_S419","This study (HEK293F TR) 9min",0.64730209276652,6.25935733411177,3.42533870901217e-05,0.0008333054567232,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 9min",-1.19256729892051,-5.63421428930265,9.28257766047161e-05,0.0017109833003386,"P84103",NA -"P84103_S148","This study (HEK293F TR) 9min",-1.20064152884553,-5.5037478645258,0.0001150855336849,0.0019995301016256,"P84103",NA -"P00533_S1039","This study (HEK293F TR) 9min",0.76105132314717,5.20603518450171,0.0001896302605604,0.0028711033896398,"P00533",NA -"Q13480_S266","This study (HEK293F TR) 9min",0.414276614970547,4.94089552385877,0.0002989062372522,0.0039808179392007,"Q13480",NA -"P84103_S152","This study (HEK293F TR) 9min",-1.10782416697773,-4.63120760462771,0.0005146794136814,0.0058854753903324,"P84103",NA -"P00533_S991","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533",NA -"P00533_S995","This study (HEK293F TR) 9min",0.487538953709562,4.49696040588643,0.0006538850213739,0.0069852105216088,"P00533",NA -"Q9BRP8_T68","This study (HEK293F TR) 9min",-0.493333938082928,-3.84663848570558,0.0021466977465303,0.0164078722359052,"Q9BRP8",NA -"P84103_S158","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103",NA -"P84103_S160","This study (HEK293F TR) 9min",-1.03249739084938,-3.83658273484773,0.0021872458582837,0.0166089985203595,"P84103",NA -"Q13480_Y659","This study (HEK293F TR) 9min",0.541049789789273,3.59323766089666,0.0034482903376149,0.0230117649619874,"Q13480",NA -"P21333_S977","This study (HEK293F TR) 9min",-0.574754991480809,-3.31627840010112,0.0058146542047515,0.033288372482313,"P21333",NA -"Q2TAK8_S235","This study (HEK293F TR) 9min",-0.429348140146745,-2.95396867911318,0.01155260565003,0.0540068515875285,"Q2TAK8",NA -"O95671_S21","This study (HEK293F TR) 9min",-0.333699201335193,-2.7744860942927,0.0162210876768497,0.0681833052759804,"O95671",NA -"Q13480_T638","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 9min",0.667818801029423,2.74332053692401,0.0172031215801296,0.0709565851482351,"Q13480",NA -"P21333_S2158","This study (HEK293F TR) 9min",0.360885642804305,2.51323354082584,0.0264893586038732,0.0953713550960174,"P21333",NA -"P26583_T179","This study (HEK293F TR) 9min",0.627009335300997,2.34836341242852,0.0359652825163965,0.117471035626303,"P26583",NA -"P00533_T693","This study (HEK293F TR) 9min",0.252207061284317,2.24845865126947,0.0432040696201188,0.133748566865269,"P00533",NA -"Q9BRP8_T72","This study (HEK293F TR) 9min",-0.41749554561012,-2.21626879916813,0.0458171403347397,0.13909023711161,"Q9BRP8",NA -"P26583_S181","This study (HEK293F TR) 9min",0.591827691734299,2.19418608558526,0.0476953210305215,0.143008712308463,"P26583",NA -"P21333_S1084","This study (HEK293F TR) 9min",-0.236450193628468,-2.18123152523993,0.0488306618067355,0.14524154220171,"P21333",NA -"Q9ULI4_S1262","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 9min",0.305239851942627,2.10727641064676,0.0558136059307488,0.158696021519012,"Q9ULI4",NA -"Q13480_S651","This study (HEK293F TR) 9min",0.404909330680219,1.89418784165381,0.0814661840931408,0.205059731760845,"Q13480",NA -"P84103_S5","This study (HEK293F TR) 9min",-0.334045621896479,-1.89185531096039,0.0817988906208661,0.205645420079757,"P84103",NA -"O95671_S228","This study (HEK293F TR) 9min",0.224438688352642,1.76851242414679,0.101246401427713,0.237318948536775,"O95671",NA -"Q13480_S634","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 9min",-0.221925787182467,-1.74813702221001,0.104831079128579,0.242495863368977,"Q13480",NA -"Q9BRP8_S64","This study (HEK293F TR) 9min",-0.411134776057704,-1.71725664992972,0.110479431688592,0.251065564307567,"Q9BRP8",NA -"Q99808_S273","This study (HEK293F TR) 9min",-0.207065890940088,-1.69999653474901,0.11375265733017,0.255981090465753,"Q99808",NA -"Q13480_S274","This study (HEK293F TR) 9min",0.28121679147228,1.69664648301734,0.114397807341695,0.257034333940225,"Q13480",NA -"P00533_S1064","This study (HEK293F TR) 9min",-0.187290803353122,-1.62449929786403,0.129095554115199,0.278115697114315,"P00533",NA -"Q99808_S269","This study (HEK293F TR) 9min",0.190859872397834,1.52541998010056,0.151943608873438,0.309220191090377,"Q99808",NA -"Q13480_S692","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 9min",-0.420900718398693,-1.51357249398194,0.154895071508407,0.313147355817565,"Q13480",NA -"O95671_T249","This study (HEK293F TR) 9min",0.162366286784415,1.49124033123286,0.160591393142969,0.320549613465477,"O95671",NA -"Q13480_S650","This study (HEK293F TR) 9min",0.211691794627006,1.48860886107728,0.161274175622051,0.321421425305714,"Q13480",NA -"Q13480_S500","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 9min",-0.17448214256039,-1.36695216131362,0.195618628377706,0.36443441742963,"Q13480",NA -"Q13480_S367","This study (HEK293F TR) 9min",0.274001878414593,1.32521071208301,0.208713224518601,0.380188151115672,"Q13480",NA -"Q9BRP8_S126","This study (HEK293F TR) 9min",0.217755930625859,1.15855704044504,0.268200033374105,0.44813214631777,"Q9BRP8",NA -"P84103_S138","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103",NA -"P84103_S140","This study (HEK293F TR) 9min",-0.439662244258063,-1.1237444182572,0.282149804048019,0.46314430409652,"P84103",NA -"O95671_S223","This study (HEK293F TR) 9min",0.218493149069754,1.08046514790376,0.300253903449531,0.481974962032279,"O95671",NA -"P00533_Y1110","This study (HEK293F TR) 9min",0.130269181438862,1.03550703563009,0.319966553711467,0.502006666447852,"P00533",NA -"P26583_S168","This study (HEK293F TR) 9min",0.373270721538564,0.981388508185086,0.344935460546253,0.526515821002716,"P26583",NA -"Q99808_S266","This study (HEK293F TR) 9min",-0.19472892269923,-0.912851749006924,0.378516732260439,0.557959942639866,"Q99808",NA -"Q13480_S648","This study (HEK293F TR) 9min",0.19868154050242,0.902496733801499,0.383781433335196,0.562507173927707,"Q13480",NA -"Q13480_S381","This study (HEK293F TR) 9min",0.124994378467113,0.840098524303129,0.416565200083806,0.593496857555951,"Q13480",NA -"Q9ULI4_S1059","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 9min",-0.0867960673451495,-0.784134344003739,0.447503735281774,0.620746002755217,"Q9ULI4",NA -"P00533_S695","This study (HEK293F TR) 9min",0.0942230517222206,0.74563722550437,0.469617348896385,0.640013501811697,"P00533",NA -"O95671_T234","This study (HEK293F TR) 9min",-0.0872524560456788,-0.723399839387433,0.482695238841633,0.650843863100497,"O95671",NA -"Q9ULI4_S879","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 9min",-0.100666861668111,-0.628214999722558,0.541122977401256,0.697636220675415,"Q9ULI4",NA -"P21333_S1459","This study (HEK293F TR) 9min",0.0582392146534189,0.597217959960633,0.560978743612849,0.713614018048643,"P21333",NA -"Q13480_S646","This study (HEK293F TR) 9min",-0.134850694893446,-0.585075482616889,0.56886369623831,0.719950789050142,"Q13480",NA -"O95671_S239","This study (HEK293F TR) 9min",0.0650025565003282,0.488814468530832,0.633400661867893,0.768664261154634,"O95671",NA -"Q13480_S389","This study (HEK293F TR) 9min",-0.04181148155903,-0.353928355987382,0.729265489090173,0.836494724272797,"Q13480",NA -"Q9BRP8_T112","This study (HEK293F TR) 9min",-0.0818735826436469,-0.285500099354485,0.779916742989811,0.870114664215326,"Q9BRP8",NA -"Q9BRP8_S55","This study (HEK293F TR) 9min",-0.0407263748641497,-0.246487955314125,0.809288710162003,0.889625328669485,"Q9BRP8",NA -"Q9BRP8_S117","This study (HEK293F TR) 9min",-0.0407225172113818,-0.191674223855935,0.851062561103756,0.915120834024333,"Q9BRP8",NA -"Q13480_Y265","This study (HEK293F TR) 9min",0.0143109870543085,0.136935787148897,0.893253075752858,0.939962605124081,"Q13480",NA -"P21333_S2339","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 9min",-0.0165599480324463,-0.13406057931286,0.895479813480468,0.941241914548542,"P21333",NA -"P21333_S2152","This study (HEK293F TR) 9min",-0.0142071497466957,-0.132275595636638,0.896862681473085,0.941935040992472,"P21333",NA -"Q9BRP8_S131","This study (HEK293F TR) 9min",-0.031191359515386,-0.11545702221769,0.909909062699392,0.949129944207173,"Q9BRP8",NA -"Q13480_T387","This study (HEK293F TR) 9min",0.0105187450499038,0.0971695786109935,0.924125773034881,0.957486343559405,"Q13480",NA -"Q13480_T369","This study (HEK293F TR) 9min",0.0013739350822774,0.0075906635613288,0.99406287219463,0.996604381840525,"Q13480",NA -"Q13480_S418","This study (HEK293F TR) 12min",1.22802565942112,10.8140946681642,1.00231715879494e-07,2.3110904470289e-05,"Q13480",NA -"Q13480_S419","This study (HEK293F TR) 12min",0.738599752638109,7.14219810241838,9.1769089885754e-06,0.0003545937511537,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 12min",-1.4276699947204,-6.74494319267636,1.63875691221844e-05,0.000521617557938,"P84103",NA -"P84103_S148","This study (HEK293F TR) 12min",-1.43263528491908,-6.56720861354789,2.13848044893434e-05,0.0006259210711296,"P84103",NA -"Q13480_S401","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 12min",0.613163483432629,6.44006063730414,2.59375445754575e-05,0.0007165936517283,"Q13480",NA -"Q13480_S253","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 12min",0.829966158537948,6.22648106024866,3.60483810716158e-05,0.0009092600281973,"Q13480",NA -"P00533_S1042","This study (HEK293F TR) 12min",0.598529044819585,5.73269663265156,7.90474886446553e-05,0.0015894214475115,"P00533",NA -"P00533_S1045","This study (HEK293F TR) 12min",0.612488360936476,5.55688560584916,0.0001054081747554,0.0019436306304023,"P00533",NA -"P84103_S152","This study (HEK293F TR) 12min",-1.262820964745,-5.27916453670207,0.0001675468599323,0.0026824350128627,"P84103",NA -"Q13480_S266","This study (HEK293F TR) 12min",0.439881933079729,5.24627892485434,0.000177123839181,0.0027904922084,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 12min",0.635730680478977,4.69764215135396,0.0004575649887099,0.0053948370582447,"P00533",NA -"Q99808_S269","This study (HEK293F TR) 12min",0.56759342706096,4.53640853540863,0.0006093276000663,0.0065985953883397,"Q99808",NA -"Q9BRP8_T68","This study (HEK293F TR) 12min",-0.495689206430953,-3.86500305617661,0.0020746221048463,0.01539369601796,"Q9BRP8",NA -"P84103_S158","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103",NA -"P84103_S160","This study (HEK293F TR) 12min",-0.904411051146649,-3.36063592488138,0.0053466612785792,0.0293872418786189,"P84103",NA -"Q13480_T638","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 12min",0.742371188856811,3.049572915995,0.0096382996174068,0.0440313506176935,"Q13480",NA -"Q13480_Y659","This study (HEK293F TR) 12min",0.452361055616073,3.00423512223471,0.0105031563119427,0.0466058670773552,"Q13480",NA -"P26583_S168","This study (HEK293F TR) 12min",0.994261219026512,2.61407198096008,0.0219361667939551,0.0771707028457242,"P26583",NA -"O95671_S223","This study (HEK293F TR) 12min",0.522119409154012,2.58191996882663,0.0232983537076516,0.0803923543354305,"O95671",NA -"O95671_S21","This study (HEK293F TR) 12min",-0.308407207386958,-2.56420004857986,0.0240839078599614,0.0821266251232947,"O95671",NA -"Q13480_T387","This study (HEK293F TR) 12min",0.261440202541962,2.41512026315417,0.0317903458648704,0.0996462352947721,"Q13480",NA -"P00533_S1039","This study (HEK293F TR) 12min",0.316931537520061,2.16799667147888,0.0500167990173577,0.136134310437061,"P00533",NA -"P21333_S977","This study (HEK293F TR) 12min",-0.371776330669387,-2.14511197526313,0.0521318833876477,0.139968632168718,"P21333",NA -"Q99808_S266","This study (HEK293F TR) 12min",0.457418491059631,2.14428993805316,0.0522093982680528,0.140123379860785,"Q99808",NA -"Q9BRP8_T72","This study (HEK293F TR) 12min",-0.402712129742984,-2.13779125928544,0.0528260123391726,0.141263634489955,"Q9BRP8",NA -"Q9BRP8_S126","This study (HEK293F TR) 12min",0.383407056161037,2.03989366900358,0.0629777730243479,0.159392298642819,"Q9BRP8",NA -"Q13480_S500","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 12min",-0.257470806035361,-2.01711343992342,0.065586772883078,0.163686618500315,"Q13480",NA -"Q13480_S389","This study (HEK293F TR) 12min",0.228785992039377,1.93664149214897,0.0756222666353915,0.180882713781091,"Q13480",NA -"O95671_S228","This study (HEK293F TR) 12min",0.237468371098316,1.87118258314456,0.0848020377383626,0.195212827064335,"O95671",NA -"Q9ULI4_S1262","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 12min",0.262537062389223,1.81247027533382,0.0938837267419554,0.209696234468012,"Q9ULI4",NA -"P00533_S991","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533",NA -"P00533_S995","This study (HEK293F TR) 12min",0.195861148388209,1.80658349994721,0.0948410144131916,0.211247720150405,"P00533",NA -"P26583_S181","This study (HEK293F TR) 12min",0.463931752115329,1.72001514861467,0.109964110250647,0.233756638467073,"P26583",NA -"Q2TAK8_S235","This study (HEK293F TR) 12min",-0.244786646125297,-1.68416261328661,0.116830470117705,0.243571030715184,"Q2TAK8",NA -"Q9ULI4_S879","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 12min",-0.259788203694635,-1.62121718714161,0.12980176638711,0.261523594674924,"Q9ULI4",NA -"Q9BRP8_S64","This study (HEK293F TR) 12min",-0.381948637154169,-1.59534993214131,0.135486241778974,0.269611938542504,"Q9BRP8",NA -"Q9BRP8_S55","This study (HEK293F TR) 12min",0.263269714953562,1.59338546461594,0.135926637898369,0.270281204667307,"Q9BRP8",NA -"P21333_S2158","This study (HEK293F TR) 12min",0.217817818547985,1.51689893538148,0.15406148739414,0.293802889869716,"P21333",NA -"Q13480_S634","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 12min",-0.187606575987003,-1.47780032801363,0.16410449892751,0.30734867875883,"Q13480",NA -"P00533_Y1110","This study (HEK293F TR) 12min",0.182232933285991,1.44856582698123,0.171970827810516,0.317727807565592,"P00533",NA -"P26583_T179","This study (HEK293F TR) 12min",0.37595083276565,1.40806385301275,0.183389876434761,0.3317068329613,"P26583",NA -"P00533_T693","This study (HEK293F TR) 12min",0.142229130541327,1.26799113950133,0.227811765275613,0.384475696343489,"P00533",NA -"Q9ULI4_S1059","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 12min",-0.139800663857581,-1.26298927126884,0.22954583899431,0.386470018565069,"Q9ULI4",NA -"P84103_S138","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103",NA -"P84103_S140","This study (HEK293F TR) 12min",-0.48313025085957,-1.23484545190098,0.239500006549947,0.397445645496538,"P84103",NA -"Q9BRP8_S131","This study (HEK293F TR) 12min",0.308646201724812,1.14247573442154,0.274576623538234,0.436863068237419,"Q9BRP8",NA -"P21333_S2339","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 12min",0.140683848987329,1.13890202180895,0.276009352428229,0.438322856582218,"P21333",NA -"Q13480_Y265","This study (HEK293F TR) 12min",0.114953294053219,1.09993949032307,0.292002403574503,0.455684267966104,"Q13480",NA -"Q9BRP8_S117","This study (HEK293F TR) 12min",0.215841379723052,1.01593004969857,0.328841846262963,0.493988590134667,"Q9BRP8",NA -"Q13480_S367","This study (HEK293F TR) 12min",0.191708380502693,0.92719802108015,0.371305657642422,0.53649590234407,"Q13480",NA -"Q13480_S274","This study (HEK293F TR) 12min",0.149512763261884,0.902045367299778,0.384012057448678,0.54881259842318,"Q13480",NA -"O95671_S239","This study (HEK293F TR) 12min",0.108603373215278,0.81668941987864,0.429330865409643,0.59052441578603,"O95671",NA -"P21333_S1084","This study (HEK293F TR) 12min",-0.0864207147878026,-0.797223231819882,0.440138816950366,0.599946394112229,"P21333",NA -"P21333_S2152","This study (HEK293F TR) 12min",0.0816936932427836,0.760608716463993,0.460937618461087,0.618414402842063,"P21333",NA -"Q13480_S648","This study (HEK293F TR) 12min",-0.164182265564548,-0.745786236836282,0.469530461939005,0.626434176494061,"Q13480",NA -"P84103_S5","This study (HEK293F TR) 12min",-0.124327407381937,-0.704123779913945,0.49420954817595,0.647421593363933,"P84103",NA -"Q13480_S651","This study (HEK293F TR) 12min",0.147218162711148,0.688694561346873,0.503543869489854,0.655017614046599,"Q13480",NA -"Q13480_S646","This study (HEK293F TR) 12min",-0.12629115776509,-0.547938296781049,0.593343039718602,0.730381080424971,"Q13480",NA -"P00533_S695","This study (HEK293F TR) 12min",-0.0667963474886992,-0.528595097536559,0.6063050173937,0.74035260643068,"P00533",NA -"Q13480_S381","This study (HEK293F TR) 12min",0.078263978246408,0.526019277324531,0.608041779725835,0.74170244337623,"Q13480",NA -"P00533_S1064","This study (HEK293F TR) 12min",-0.0474659432084152,-0.411704098834701,0.687498272416577,0.800511463689956,"P00533",NA -"P21333_S1459","This study (HEK293F TR) 12min",0.0375077397661947,0.384625650589643,0.706950920127375,0.814587470561265,"P21333",NA -"Q13480_S650","This study (HEK293F TR) 12min",0.0409547331526969,0.287992167016107,0.778051879597256,0.863562856129909,"Q13480",NA -"O95671_T249","This study (HEK293F TR) 12min",0.0298440893599583,0.274100680528459,0.788465134956283,0.870691608475478,"O95671",NA -"O95671_T234","This study (HEK293F TR) 12min",-0.0237811195920656,-0.197166462389864,0.846853342120868,0.908436985526979,"O95671",NA -"Q13480_T369","This study (HEK293F TR) 12min",-0.0332424931421329,-0.183656844225451,0.85721556604946,0.914681326521504,"Q13480",NA -"Q99808_S273","This study (HEK293F TR) 12min",-0.0221335212303035,-0.18171466687479,0.858707590795976,0.915828310495618,"Q99808",NA -"Q9BRP8_T112","This study (HEK293F TR) 12min",0.0236583320625598,0.0824986025568328,0.935550994272012,0.963302746964072,"Q9BRP8",NA -"Q13480_S692","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 12min",-0.0206601610506282,-0.0742946023148555,0.94194664850136,0.966825967577347,"Q13480",NA -"Q13480_S418","This study (HEK293F TR) 15min",1.19749459863645,10.5452356430193,1.33532459201629e-07,2.7226827001595e-05,"Q13480",NA -"P84103_S150","This study (HEK293F TR) 15min",-1.56768599675222,-7.40644058581533,6.31053103970649e-06,0.0002896563098532,"P84103",NA -"P84103_S148","This study (HEK293F TR) 15min",-1.58278198443578,-7.25548197156277,7.80740041793263e-06,0.0003358679675867,"P84103",NA -"P00533_S1042","This study (HEK293F TR) 15min",0.731570451998518,7.00696399450998,1.1153725624496e-05,0.0004307639349707,"P00533",NA -"Q13480_S419","This study (HEK293F TR) 15min",0.701683685031043,6.78522280277849,1.5437342018886e-05,0.0005452996245897,"Q13480",NA -"P00533_S1045","This study (HEK293F TR) 15min",0.725827613903997,6.58517169838804,2.08132253096596e-05,0.0006740087464202,"P00533",NA -"P84103_S152","This study (HEK293F TR) 15min",-1.41677309205398,-5.92275427232507,5.8195448312691e-05,0.0013745993327396,"P84103",NA -"Q13480_S253","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480",NA -"Q13480_S256","This study (HEK293F TR) 15min",0.760549413141709,5.70571036854337,8.25944185411434e-05,0.001767327144005,"Q13480",NA -"P00533_T1041","This study (HEK293F TR) 15min",0.723730501484713,5.34790441045508,0.0001492403084544,0.0026489081079376,"P00533",NA -"Q13480_S266","This study (HEK293F TR) 15min",0.420109140926637,5.01045750333784,0.0002650230072609,0.0039448055044581,"Q13480",NA -"Q13480_S401","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480",NA -"Q13480_S402","This study (HEK293F TR) 15min",0.357125543256384,3.75089224300487,0.0025662358906105,0.0198971994893768,"Q13480",NA -"Q99808_S269","This study (HEK293F TR) 15min",0.42514576944972,3.39791619383473,0.0049828685300707,0.0317251202424877,"Q99808",NA -"P00533_S1039","This study (HEK293F TR) 15min",0.46835256947163,3.20380489628238,0.0071949947049766,0.0414213771704189,"P00533",NA -"Q13480_T638","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480",NA -"Q13480_Y627","This study (HEK293F TR) 15min",0.77804500160822,3.19611671350484,0.0073005885056266,0.0418729441628661,"Q13480",NA -"P84103_S158","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103",NA -"P84103_S160","This study (HEK293F TR) 15min",-0.838376365978029,-3.11526239148134,0.0085097706686449,0.0466293852418598,"P84103",NA -"P00533_S991","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533",NA -"P00533_S995","This study (HEK293F TR) 15min",0.337436941792483,3.11244989795866,0.0085552645816416,0.04673853191452,"P00533",NA -"P21333_S977","This study (HEK293F TR) 15min",-0.493961862021035,-2.85011018220758,0.0140618674822364,0.0659996886879095,"P21333",NA -"P00533_T693","This study (HEK293F TR) 15min",0.302970924035009,2.70102506948318,0.0186297949781265,0.0796232112261325,"P00533",NA -"Q13480_Y659","This study (HEK293F TR) 15min",0.40142027081858,2.66592550662378,0.0199012507037629,0.0834185558368584,"Q13480",NA -"Q13480_T387","This study (HEK293F TR) 15min",0.283010041859999,2.61437713146848,0.0219236176140641,0.0891084896153846,"Q13480",NA -"Q9BRP8_T68","This study (HEK293F TR) 15min",-0.324276876289879,-2.52846158771942,0.0257472549046568,0.0994401063525738,"Q9BRP8",NA -"Q13480_S500","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480",NA -"Q13480_T503","This study (HEK293F TR) 15min",-0.287619262859952,-2.25330665495333,0.0428229636284941,0.140427559933594,"Q13480",NA -"P26583_T179","This study (HEK293F TR) 15min",0.594304072262581,2.22587106855234,0.0450224204893746,0.145255740434629,"P26583",NA -"P21333_S2152","This study (HEK293F TR) 15min",0.231500547426709,2.15538467229837,0.0511722669691234,0.158296857191239,"P21333",NA -"P21333_S1459","This study (HEK293F TR) 15min",0.20735146219727,2.1262995729809,0.0539331068001716,0.164102366013498,"P21333",NA -"P26583_S181","This study (HEK293F TR) 15min",0.56274483949035,2.0863621520079,0.0579516156115763,0.171972969826382,"P26583",NA -"Q13480_S634","This study (HEK293F TR) 15min",-0.251780324857542,-1.98330492790206,0.0696433861229981,0.194642514951407,"Q13480",NA -"Q13480_S637","This study (HEK293F TR) 15min",-0.251780324857542,-1.98330492790206,0.0696433861229981,0.194642514951407,"Q13480",NA -"O95671_T234","This study (HEK293F TR) 15min",-0.23101300138484,-1.91530159346704,0.0785101662183716,0.210554783116235,"O95671",NA -"Q9ULI4_S1262","This study (HEK293F TR) 15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4",NA -"Q9ULI4_S1267","This study (HEK293F TR) 15min",0.270844845929933,1.86982450404504,0.0850027880436001,0.221517471870052,"Q9ULI4",NA -"Q9BRP8_S126","This study (HEK293F TR) 15min",0.345230442598623,1.83677734378589,0.0900224335815617,0.229808936841792,"Q9BRP8",NA -"P21333_S2158","This study (HEK293F TR) 15min",0.261661206390812,1.82222743782285,0.0923161811418474,0.233431833428747,"P21333",NA -"Q9BRP8_T112","This study (HEK293F TR) 15min",0.515214106322935,1.79659511400951,0.0964853757143596,0.240084613911934,"Q9BRP8",NA -"O95671_S239","This study (HEK293F TR) 15min",0.231370741987128,1.73989104993818,0.106313659496786,0.256044264962412,"O95671",NA -"Q13480_S274","This study (HEK293F TR) 15min",0.268740390601147,1.62137344705138,0.129768067771291,0.292354386267867,"Q13480",NA -"P84103_S5","This study (HEK293F TR) 15min",-0.275797441045292,-1.56196884314357,0.143139766362122,0.311761534736955,"P84103",NA -"Q13480_Y265","This study (HEK293F TR) 15min",0.160439380588173,1.53517662947704,0.14954922262543,0.320779311946034,"Q13480",NA -"Q9BRP8_S55","This study (HEK293F TR) 15min",0.241586899117331,1.4621547091472,0.168275760731246,0.346375325323939,"Q9BRP8",NA -"Q13480_S381","This study (HEK293F TR) 15min",0.210201808893093,1.41278537181092,0.18202697812748,0.364557057630292,"Q13480",NA -"Q99808_S273","This study (HEK293F TR) 15min",0.169516093914348,1.39171531791279,0.188174667079203,0.372163317074396,"Q99808",NA -"Q13480_S692","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480",NA -"Q13480_T684","This study (HEK293F TR) 15min",0.375347715724235,1.34976243414489,0.20092718059154,0.38821054421941,"Q13480",NA -"Q9ULI4_S1059","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4",NA -"Q9ULI4_S1062","This study (HEK293F TR) 15min",-0.138440655534927,-1.2507026635164,0.233850171856444,0.427434919680274,"Q9ULI4",NA -"Q9BRP8_S131","This study (HEK293F TR) 15min",0.331919525527716,1.22862358770976,0.241746138067417,0.436189698711396,"Q9BRP8",NA -"P26583_S168","This study (HEK293F TR) 15min",0.453378525882943,1.19200475549071,0.255304123215189,0.451992083233722,"P26583",NA -"Q99808_S266","This study (HEK293F TR) 15min",0.250295915548659,1.17333912759733,0.26243991816857,0.460586394412772,"Q99808",NA -"Q13480_S367","This study (HEK293F TR) 15min",0.228413165524687,1.10472079784831,0.290002886037876,0.490131803250929,"Q13480",NA -"Q13480_S651","This study (HEK293F TR) 15min",0.214935586237271,1.00548034668756,0.333652019434038,0.534074858721006,"Q13480",NA -"Q13480_S389","This study (HEK293F TR) 15min",0.116999989141352,0.990388579004969,0.340688634230938,0.541089932556352,"Q13480",NA -"Q13480_T369","This study (HEK293F TR) 15min",0.177355166169711,0.979844982942209,0.345667591618793,0.546010499175559,"Q13480",NA -"Q13480_S646","This study (HEK293F TR) 15min",-0.215355438843879,-0.934360682496404,0.3677414175638,0.567613387351433,"Q13480",NA -"Q2TAK8_S235","This study (HEK293F TR) 15min",-0.127054642270805,-0.874151763358307,0.398448849028704,0.596687577898067,"Q2TAK8",NA -"P00533_S1064","This study (HEK293F TR) 15min",0.0933249044970843,0.809469761005293,0.433319005715053,0.626870053319967,"P00533",NA -"P00533_Y1110","This study (HEK293F TR) 15min",0.0967046875601518,0.768703566268617,0.456286824500938,0.646056399640043,"P00533",NA -"Q9ULI4_S879","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4",NA -"Q9ULI4_S885","This study (HEK293F TR) 15min",-0.102709546327105,-0.640962443332291,0.533073007610938,0.707656968777008,"Q9ULI4",NA -"Q9BRP8_S117","This study (HEK293F TR) 15min",0.0913532575775306,0.429984832518911,0.674494851065323,0.808414084289545,"Q9BRP8",NA -"O95671_T249","This study (HEK293F TR) 15min",0.0319545032353651,0.293483610008018,0.773947605181916,0.874876182642409,"O95671",NA -"O95671_S228","This study (HEK293F TR) 15min",0.0369635109008434,0.29126185306125,0.775607287266316,0.875862006535801,"O95671",NA -"P21333_S1084","This study (HEK293F TR) 15min",0.0289944901738117,0.267471534088705,0.793449587031667,0.887214175708526,"P21333",NA -"Q13480_S648","This study (HEK293F TR) 15min",0.0520249411043067,0.236319586128236,0.816996322222741,0.900709375682836,"Q13480",NA -"O95671_S223","This study (HEK293F TR) 15min",0.0445685528352051,0.220394864717579,0.829106992757838,0.908049038850524,"O95671",NA -"P21333_S2339","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333",NA -"P21333_T2336","This study (HEK293F TR) 15min",-0.0271973531837446,-0.220175384394043,0.82927423354223,0.908057310054464,"P21333",NA -"P84103_S138","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103",NA -"P84103_S140","This study (HEK293F TR) 15min",-0.0838395925340549,-0.214287843383256,0.833763671071764,0.910447713317859,"P84103",NA -"P00533_S695","This study (HEK293F TR) 15min",-0.0245724730021255,-0.194455075039402,0.848930728584608,0.918916067578158,"P00533",NA -"Q9BRP8_S64","This study (HEK293F TR) 15min",0.0447796224341097,0.187038676571412,0.854618936445188,0.922321519236564,"Q9BRP8",NA -"Q9BRP8_T72","This study (HEK293F TR) 15min",-0.0304428670675775,-0.161605500102992,0.874188175237224,0.934059364936993,"Q9BRP8",NA -"O95671_S21","This study (HEK293F TR) 15min",-0.0170432300035212,-0.141703080071516,0.889563082631497,0.942942431396507,"O95671",NA -"Q13480_S650","This study (HEK293F TR) 15min",0.0018571547029626,0.0130594431026136,0.989785608782202,0.994805705262154,"Q13480",NA diff --git a/inst/extdata/garrido-2024.csv b/inst/extdata/garrido-2024.csv new file mode 100644 index 0000000..27e174a --- /dev/null +++ b/inst/extdata/garrido-2024.csv @@ -0,0 +1,23 @@ +"Protein","Label","log2FC","SE","DF","pvalue","adj.pvalue","issue" +"P00533_S1039_S1042","t0 vs t1",-0.32003632837107,0.149943118877325,9,0.0615809510693193,0.280245896469974,NA +"P00533_S1064","t0 vs t1",0.356653113576368,0.0891534693290476,9,0.00310836383475933,0.0686359841548604,NA +"P00533_S991_S995","t0 vs t1",-0.122903662291889,0.10858297785538,9,0.286937654558352,0.579073736150236,NA +"P00533_T693","t0 vs t1",-0.0233443995453799,0.177244588005518,9,0.898113182376962,0.96083633837953,NA +"P00533_T693_S695","t0 vs t1",-0.165995656836019,0.150007538230776,9,0.297173768898177,0.588091082037082,NA +"P00533_Y1110","t0 vs t1",0.210632429258209,0.0927903082311584,9,0.0493644341170289,0.252589138618561,NA +"P28482_T185","t0 vs t1",0.634378738770068,0.182300631518675,9,0.00694020442220732,0.0999180588053667,NA +"P28482_T185_T190","t0 vs t1",0.890196707480898,0.165905887251245,9,0.000452927502292055,0.025493055208194,NA +"P28482_T185_Y187","t0 vs t1",0.77570963567424,0.200315650539845,9,0.0037747061619258,0.0748119597579435,NA +"P28482_Y187","t0 vs t1",1.13798944558515,0.182042606245047,9,0.000149415500661671,0.0138506354758592,NA +"P28482_Y187_T190","t0 vs t1",0.0839586116733722,0.114930246570557,9,0.483655330294773,0.739194565873987,NA +"Q13480_S266","t0 vs t1",0.147775796440306,0.106174162166453,9,0.19741006608831,0.483926492931687,NA +"Q13480_S418_S419","t0 vs t1",0.281122057791004,0.146958322587612,9,0.0880466739278739,0.328235537559088,NA +"Q13480_S419","t0 vs t1",0.320048191455162,0.114579108916761,9,0.0209422984694783,0.166454473266352,NA +"Q13480_S500_T503","t0 vs t1",-0.450413295801827,0.0980746173074297,9,0.00130426958782228,0.0449838460341635,NA +"Q13480_S634_S637","t0 vs t1",-0.616943295142088,0.129109930148088,9,0.00100346794179792,0.0394342642255919,NA +"Q13480_S650_S651_Y659","t0 vs t1",1.42523331569634,0.173080560297211,9,1.75594329256568e-05,0.00503640093293397,NA +"Q13480_S651_Y659","t0 vs t1",1.34708073620391,0.292405749303692,9,0.00127794033828973,0.0447363035684408,NA +"Q13480_T387_S389","t0 vs t1",-0.494395484918809,0.116320309251806,9,0.0021415442309728,0.0576989604963562,NA +"Q13480_Y265_S266","t0 vs t1",0.438767055281507,0.111182087237631,9,0.00337315512046587,0.0713587661347963,NA +"Q13480_Y627_T638","t0 vs t1",2.58471343768464,0.276077760810949,9,6.17542514318978e-06,0.0032951498209992,NA +"Q13480_Y659","t0 vs t1",2.93366028129369,0.180356840960513,9,5.57098141249871e-08,0.000346487188950357,NA diff --git a/vignettes/PTM-Analysis.Rmd b/vignettes/PTM-Analysis.Rmd index b8611ce..710ac01 100644 --- a/vignettes/PTM-Analysis.Rmd +++ b/vignettes/PTM-Analysis.Rmd @@ -22,14 +22,11 @@ knitr::opts_chunk$set( Run this code below to install MSstatsBioNet from bioconductor ```{r eval = FALSE} -# if (!require("BiocManager", quietly = TRUE)) { -# install.packages("BiocManager") -# } -# -# BiocManager::install("MSstatsBioNet") - -install.packages("devtools") -devtools::install_github("Vitek-Lab/MSstatsBioNet@feature-ptm", build_vignettes = TRUE) +if (!require("BiocManager", quietly = TRUE)) { + install.packages("BiocManager") +} + +BiocManager::install("MSstatsBioNet") ``` ## Dataset @@ -38,19 +35,12 @@ We will be taking a subset of the dataset found in this [paper](https://www.bior ```{r} input = data.table::fread(system.file( - "extdata/2_egf_data.csv", + "extdata/garrido-2024.csv", package = "MSstatsBioNet" )) head(input) ``` -I'm going to do some renaming of the columns such that the PTM analysis goes smoothly. Specifically, the `GlobalProtein` column will be renamed to `Protein` and the `Protein` column will be renamed to `Site`. In the future, you won't need to do this. -```{r} -library(tidyverse) -input <- input %>% - rename(Site = Protein, Protein = GlobalProtein) -``` - ## ID Conversion First, we need to convert the group comparison results to a format that can be @@ -66,27 +56,6 @@ annotated_df = annotateProteinInfoFromIndra(input, "Uniprot") head(annotated_df) ``` - -## getPathwaysFromIndra - -Here, we will get pathways from INDRA and rank them based on relevance. We will see here that GAB1 is rated as the most relevant edge to track. - -```{r} -pathways = getPathwaysFromIndra(annotated_df, main_target = "P00533") -# optional: filter by phosphorylation -pathways$edges = pathways$edges %>% filter(str_detect(interaction, "Phosphorylation")) -``` - -## Visualize Networks - -The function `visualizeNetworks` then takes the output of -`getSubnetworkFromIndra` and visualizes the subnetwork. The function requires -Cytoscape desktop to be open for the visualization to work. - -```{r} -visualizeNetworks(subnetwork$nodes, subnetwork$edges) -``` - ## Subnetwork Query The package provides a function `getSubnetworkFromIndra` that retrieves a @@ -94,7 +63,7 @@ subnetwork of proteins from the INDRA database based on differential abundance analysis results. This function may help finding off target subnetworks. ```{r} -subnetwork <- getSubnetworkFromIndra(annotated_df, pvalueCutoff = 0.05, statement_types = c("Phosphorylation", "Activation", "Inhibition")) +subnetwork <- getSubnetworkFromIndra(annotated_df, pvalueCutoff = 0.05, statement_types = c("Phosphorylation"), logfc_cutoff = 1, force_include_proteins = c("P00533_Y1110")) head(subnetwork$nodes) head(subnetwork$edges) ``` From 4c8d92e7e438dc72951dfea9f94d171efc45a4ee Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:27:10 -0400 Subject: [PATCH 16/23] remove commented code --- R/utils_getSubnetworkFromIndra.R | 20 -------------------- 1 file changed, 20 deletions(-) diff --git a/R/utils_getSubnetworkFromIndra.R b/R/utils_getSubnetworkFromIndra.R index df431d5..5717377 100644 --- a/R/utils_getSubnetworkFromIndra.R +++ b/R/utils_getSubnetworkFromIndra.R @@ -291,26 +291,6 @@ nodes = nodes[nodes$id %in% c(edges$source, edges$target), ] nodes$hgncName = ifelse(is.na(nodes$hgncName), nodes$id, nodes$hgncName) - # - # # Get unique nodes from edges - # node_ids <- unique(c(edges$source, edges$target)) - # - # # Create base nodes dataframe - # nodes <- data.frame( - # id = node_ids, - # stringsAsFactors = FALSE - # ) - # - # # Add attributes from input where available - # nodes$logFC <- input$log2FC[match(nodes$id, input$Protein)] - # nodes$adj.pvalue <- input$adj.pvalue[match(nodes$id, input$Protein)] - # nodes$hgncName <- if ("HgncName" %in% colnames(input) && is.character(input$HgncName)) { - # hgnc_value <- input$HgncName[match(nodes$id, input$Protein)] - # ifelse(is.na(hgnc_value), nodes$id, hgnc_value) - # } else { - # nodes$id - # } - # nodes$site <- input$Site[match(nodes$id, input$Protein)] return(nodes) } From 0d4566582b544b9cffccb161a73f88fc34048364 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:29:58 -0400 Subject: [PATCH 17/23] tidy up comments --- R/visualizeNetworksWithHTML.R | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index 00e3202..7349d75 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -427,7 +427,7 @@ generateCytoscapeConfig <- function(nodes, edges, } } - # Define the style configuration with tooltip support + # Define the style configuration style_config <- list( list( selector = "node", @@ -545,7 +545,7 @@ generateJavaScriptCode <- function(config) { event_handlers_js <- paste(handlers, collapse = "\n ") } - # Generate the complete JavaScript code with modified tooltip functionality + # Generate the complete JavaScript code js_code <- paste0(" cytoscape.use(cytoscapeDagre); var cy = cytoscape({ @@ -754,7 +754,7 @@ exportCytoscapeToHTML <- function(config, });' } - # Create the complete HTML content with enhanced tooltip description + # Create the complete HTML content html_content <- paste0(' From 371972d19afcdeb63b4d718c277dfadefbc96192 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:33:21 -0400 Subject: [PATCH 18/23] add visualization in vignette --- R/visualizeNetworksWithHTML.R | 4 ++-- vignettes/PTM-Analysis.Rmd | 8 ++++++++ 2 files changed, 10 insertions(+), 2 deletions(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index 7349d75..79c1351 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -326,7 +326,7 @@ createNodeElements <- function(nodes, displayLabelType = "id") { createEdgeElements <- function(edges, nodes = NULL) { if (nrow(edges) == 0) return(list()) - # First consolidate edges (now includes PTM overlap calculation) + # First consolidate edges consolidated_edges <- consolidateEdges(edges, nodes) edge_elements <- list() @@ -402,7 +402,7 @@ generateCytoscapeConfig <- function(nodes, edges, event_handlers = NULL, layout_options = NULL) { - # Create elements (now passing nodes to edge creation for PTM overlap) + # Create elements node_elements <- createNodeElements(nodes, display_label_type) edge_elements <- createEdgeElements(edges, nodes) diff --git a/vignettes/PTM-Analysis.Rmd b/vignettes/PTM-Analysis.Rmd index 710ac01..67bd7cc 100644 --- a/vignettes/PTM-Analysis.Rmd +++ b/vignettes/PTM-Analysis.Rmd @@ -68,6 +68,14 @@ head(subnetwork$nodes) head(subnetwork$edges) ``` +## Network Visualization + +Visualize the subnetwork on your browser + +```{r} +previewNetworkInBrowser(subnetwork$nodes, subnetwork$edges, displayLabelType = "hgncName") +``` + # Session info ```{r} From b2299e61786ee46cfb3a91112af4b31a5284a8d9 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:48:15 -0400 Subject: [PATCH 19/23] ensure protein column is a character and not a factor --- R/annotateProteinInfoFromIndra.R | 3 ++- vignettes/MSstatsBioNet.Rmd | 20 +++++++++++++------- 2 files changed, 15 insertions(+), 8 deletions(-) diff --git a/R/annotateProteinInfoFromIndra.R b/R/annotateProteinInfoFromIndra.R index d6cb145..cffe254 100644 --- a/R/annotateProteinInfoFromIndra.R +++ b/R/annotateProteinInfoFromIndra.R @@ -56,8 +56,9 @@ annotateProteinInfoFromIndra <- function(df, proteinIdType) { #' @return A data frame with populated Uniprot IDs. .populateUniprotIdsInDataFrame <- function(df, proteinIdType) { if ("GlobalProtein" %in% colnames(df)) { - protein_ids = unique(df$GlobalProtein) + protein_ids = unique(as.character(df$GlobalProtein)) } else { + df$Protein = as.character(df$Protein) df$GlobalProtein = ifelse(grepl("_[A-Z][0-9]", df$Protein), gsub("_[A-Z][0-9].*", "", df$Protein, perl = TRUE), df$Protein) diff --git a/vignettes/MSstatsBioNet.Rmd b/vignettes/MSstatsBioNet.Rmd index 8c9c1d5..d3fd498 100644 --- a/vignettes/MSstatsBioNet.Rmd +++ b/vignettes/MSstatsBioNet.Rmd @@ -106,7 +106,11 @@ subnetwork of proteins from the INDRA database based on differential abundance analysis results. ```{r} -subnetwork <- getSubnetworkFromIndra(annotated_df, pvalueCutoff = 0.05) +subnetwork <- getSubnetworkFromIndra( + annotated_df, + pvalueCutoff = 0.05, + statement_types = c("Complex", "IncreaseAmount", "DecreaseAmount", "Inhibition", "Activation", "Phosphorylation") +) head(subnetwork$nodes) head(subnetwork$edges) ``` @@ -116,16 +120,18 @@ This package is distributed under the [Artistic-2.0](https://opensource.org/lice ## Visualize Networks -The function `visualizeNetworks` then takes the output of +The function `previewNetworkInBrowser` then takes the output of `getSubnetworkFromIndra` and visualizes the subnetwork. The function requires -Cytoscape desktop to be open for the visualization to work. +an internet browser to view the subnetwork ```{r} -visualizeNetworks(subnetwork$nodes, subnetwork$edges) +previewNetworkInBrowser(subnetwork$nodes, subnetwork$edges, displayLabelType = "hgncName") ``` -In the network diagram displayed in Cytoscape, you should see two arrows -connecting two nodes, P16050 and P84243. These arrows represent the -interactions between these two proteins, notably activation and phosphorylation. + +In the network diagram displayed using CytoscapeJS, you should see three arrows +connecting two nodes, APP and APOD. These arrows represent the +interactions between these two proteins, notably Activation, IncreaseAmount +(e.g. via transcriptional regulation), and forming a protein complex. # Session info From bb606579a2da1960e76dfea5121328bbf2680d86 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:49:41 -0400 Subject: [PATCH 20/23] reorder when protein is turned into a character --- R/utils_getSubnetworkFromIndra.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/R/utils_getSubnetworkFromIndra.R b/R/utils_getSubnetworkFromIndra.R index 5717377..05da0a0 100644 --- a/R/utils_getSubnetworkFromIndra.R +++ b/R/utils_getSubnetworkFromIndra.R @@ -107,6 +107,8 @@ #' @keywords internal #' @noRd .filterGetSubnetworkFromIndraInput <- function(input, pvalueCutoff, logfc_cutoff, force_include_proteins) { + input$Protein <- as.character(input$Protein) + # Extract exempt proteins before any filtering exempt_proteins <- NULL if (!is.null(force_include_proteins)) { @@ -142,8 +144,6 @@ input <- combined_input[!duplicated(combined_input$Protein), ] } - input$Protein <- as.character(input$Protein) - # Handle PTMs in Protein column input$Site = ifelse(grepl("_[A-Z][0-9]", input$Protein), gsub(".*?_(?=[A-Z][0-9])", "", input$Protein, perl = TRUE), From 8887c5556c95c64c6c577cc66a7568dd19d8823a Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 14:57:51 -0400 Subject: [PATCH 21/23] remove changed comments --- R/visualizeNetworksWithHTML.R | 2 -- 1 file changed, 2 deletions(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index 79c1351..ba9c23e 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -127,7 +127,6 @@ calculatePTMOverlapAggregated <- function(edges, nodes) { unique_overlap_sites <- unique(all_overlap_sites) unique_overlap_sites <- unique_overlap_sites[unique_overlap_sites != "" & !is.na(unique_overlap_sites)] - # CHANGED: Only create tooltip text if there are actual overlapping sites if (length(unique_overlap_sites) > 0) { if (length(unique_overlap_sites) == 1) { overlap_info[edge_key] <- paste0("Overlapping PTM site: ", unique_overlap_sites[1]) @@ -135,7 +134,6 @@ calculatePTMOverlapAggregated <- function(edges, nodes) { overlap_info[edge_key] <- paste0("Overlapping PTM sites: ", paste(unique_overlap_sites, collapse = ", ")) } } else { - # CHANGED: Return empty string instead of "No overlapping PTM sites found" overlap_info[edge_key] <- "" } } From b737617e9bab3c799814feb0cc643954eacec4e2 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 15:34:32 -0400 Subject: [PATCH 22/23] add multiple PTM sites to site column --- R/utils_getSubnetworkFromIndra.R | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/R/utils_getSubnetworkFromIndra.R b/R/utils_getSubnetworkFromIndra.R index 05da0a0..f3b8bce 100644 --- a/R/utils_getSubnetworkFromIndra.R +++ b/R/utils_getSubnetworkFromIndra.R @@ -146,8 +146,11 @@ # Handle PTMs in Protein column input$Site = ifelse(grepl("_[A-Z][0-9]", input$Protein), - gsub(".*?_(?=[A-Z][0-9])", "", input$Protein, perl = TRUE), - NA_character_) + gsub("^_", "", + gsub("^[^_]*_|_(?![A-Z][0-9])[^_]*", "", input$Protein, perl = TRUE) + ), + NA_character_ + ) if ("GlobalProtein" %in% colnames(input)) { input$Protein = input$GlobalProtein } From 5c5d1db62dfcaaaeda0695b6f174665c17cead92 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Thu, 11 Sep 2025 15:44:00 -0400 Subject: [PATCH 23/23] make multiple PTMs compatible in hover tooltip --- R/visualizeNetworksWithHTML.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/visualizeNetworksWithHTML.R b/R/visualizeNetworksWithHTML.R index ba9c23e..d10eb33 100644 --- a/R/visualizeNetworksWithHTML.R +++ b/R/visualizeNetworksWithHTML.R @@ -109,7 +109,7 @@ calculatePTMOverlapAggregated <- function(edges, nodes) { # Check each target node row for site matches for (j in 1:nrow(target_nodes)) { if (!is.na(target_nodes$Site[j])) { - node_sites <- trimws(unlist(strsplit(as.character(target_nodes$Site[j]), "[,;|]"))) + node_sites <- trimws(unlist(strsplit(as.character(target_nodes$Site[j]), "_"))) # Find overlapping sites for this edge-node combination overlap_sites <- intersect(edge_sites, node_sites)