diff --git a/README.md b/README.md index ab52e09..a44b11f 100644 --- a/README.md +++ b/README.md @@ -87,6 +87,23 @@ print(head(subnetwork$nodes)) print(head(subnetwork$edges)) ``` +### Filter Subnetwork by Context + +Filter a subnetwork based on contextual relevance using `filterSubnetworkByContext`. + +```r +# Example nodes and edges +nodes <- data.frame(id = c("A", "B", "C")) +edges <- data.frame(source = c("A", "B"), target = c("B", "C")) + +# Define a query for filtering +query <- c("DNA damage", "repair") + +# Filter the subnetwork +filtered_subnetwork <- filterSubnetworkByContext(nodes, edges, query = query, method = "tag_count", cutoff = 1) +print(filtered_subnetwork) +``` + ### Preview Network in Browser Quickly preview your network in a web browser using `previewNetworkInBrowser`.