From 9b3f038e896f0764deaa56b5951a119d987cfa5e Mon Sep 17 00:00:00 2001
From: "github-actions[bot]" <github-actions[bot]@users.noreply.github.com>
Date: Tue, 14 Apr 2026 09:35:24 +0000
Subject: [PATCH] docs: Weekly AI README upgrade (2026-04-14)

---
 README.md | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/README.md b/README.md
index ab52e09..4de3e7a 100644
--- a/README.md
+++ b/README.md
@@ -87,6 +87,28 @@ print(head(subnetwork$nodes))
 print(head(subnetwork$edges))
 ```
 
+### Filter Subnetwork by Context
+
+Filter a subnetwork by contextual relevance using `filterSubnetworkByContext`.
+
+```r
+# Define a query and cutoff
+query <- c("TP53", "DNA damage", "apoptosis")
+cutoff <- 2
+
+# Filter the subnetwork
+filtered_subnetwork <- filterSubnetworkByContext(
+  nodes = subnetwork$nodes,
+  edges = subnetwork$edges,
+  query = query,
+  cutoff = cutoff,
+  method = "tag_count"
+)
+
+print(head(filtered_subnetwork$nodes))
+print(head(filtered_subnetwork$edges))
+```
+
 ### Preview Network in Browser
 
 Quickly preview your network in a web browser using `previewNetworkInBrowser`.