diff --git a/0.download_data/README.md b/0.download_data/README.md index 1c5f71cf..0ebe9ce3 100644 --- a/0.download_data/README.md +++ b/0.download_data/README.md @@ -2,16 +2,29 @@ In this module, we present our method for downloading nucleus morphology data. -## Download/Process Data +### Download/Preprocess Data -Complete instructions for data download and processing can be found at: https://github.com/WayScience/mitocheck_data +Complete instructions for data download and preprocessing can be found at: https://github.com/WayScience/mitocheck_data -## Usage +### Usage -In this repository, all training data is compiled from version controlled data from [mitocheck_data](https://github.com/WayScience/mitocheck_data) and used to create [training_data.csv.gz](../1.format_data/data/training_data.csv.gz). +In this repository, all training data is downloaded from a version controlled [mitocheck_data](https://github.com/WayScience/mitocheck_data). The version of mitocheck_data used is specified by the hash corresponding to a current commit. +The current hash being used is `19bfa5b0959d6b7536f83e7bb85745ba3edf7ff9` which corresponds to [mitocheck_data/19bfa5b](https://github.com/WayScience/mitocheck_data/tree/19bfa5b0959d6b7536f83e7bb85745ba3edf7ff9). +The `hash` variable can be set in [download_data.ipynb](download_data.ipynb) to change which version of mitocheck_data is being accessed. -The current hash being used is `de21b9c3201ba4298db2b1704f3ae510a5dc47e2` which corresponds to [mitocheck_data/de21b9c](https://github.com/WayScience/mitocheck_data/tree/de21b9c3201ba4298db2b1704f3ae510a5dc47e2). +## Step 1: Download Data -The `hash` variable can be set in [format_training_data.ipynb](../1.format_data/format_training_data.ipynb) to changed which version of mitocheck_data is being accessed. \ No newline at end of file +Use the commands below to download labeled training dataset: + +```sh +# Make sure you are located in 0.download_data +cd 0.download_data + +# Activate phenotypic_profiling conda environment +conda activate phenotypic_profiling + +# Download data +bash download_data.sh +``` diff --git a/0.download_data/data/training_data.csv.gz b/0.download_data/data/training_data.csv.gz new file mode 100644 index 00000000..5659ec31 Binary files /dev/null and b/0.download_data/data/training_data.csv.gz differ diff --git a/0.download_data/download_data.ipynb b/0.download_data/download_data.ipynb new file mode 100644 index 00000000..3dfb48fb --- /dev/null +++ b/0.download_data/download_data.ipynb @@ -0,0 +1,525 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Import libraries" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "import pandas as pd\n", + "import pathlib" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Specify version of mitocheck_data to download from" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "https://raw.github.com/WayScience/mitocheck_data/19bfa5b0959d6b7536f83e7bb85745ba3edf7ff9/3.normalize_data/normalized_data/training_data.csv.gz\n" + ] + } + ], + "source": [ + "hash = \"19bfa5b0959d6b7536f83e7bb85745ba3edf7ff9\"\n", + "file_url = f\"https://raw.github.com/WayScience/mitocheck_data/{hash}/3.normalize_data/normalized_data/training_data.csv.gz\"\n", + "print(file_url)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Load training data from github" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
| \n", + " | Mitocheck_Phenotypic_Class | \n", + "Mitocheck_Object_ID | \n", + "Location_Center_X | \n", + "Location_Center_Y | \n", + "Metadata_Plate | \n", + "Metadata_Well | \n", + "Metadata_Frame | \n", + "Metadata_Site | \n", + "Metadata_Plate_Map_Name | \n", + "Metadata_DNA | \n", + "... | \n", + "efficientnet_1270 | \n", + "efficientnet_1271 | \n", + "efficientnet_1272 | \n", + "efficientnet_1273 | \n", + "efficientnet_1274 | \n", + "efficientnet_1275 | \n", + "efficientnet_1276 | \n", + "efficientnet_1277 | \n", + "efficientnet_1278 | \n", + "efficientnet_1279 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "MetaphaseAlignment | \n", + "11 | \n", + "572.214286 | \n", + "58.185714 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.048350 | \n", + "-0.721622 | \n", + "0.749788 | \n", + "-1.377590 | \n", + "0.454974 | \n", + "0.188488 | \n", + "0.141427 | \n", + "-1.553405 | \n", + "2.346107 | \n", + "-1.774278 | \n", + "
| 1 | \n", + "Artefact | \n", + "66 | \n", + "1117.070423 | \n", + "342.732394 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.172767 | \n", + "-0.290257 | \n", + "-0.709041 | \n", + "-1.431541 | \n", + "-0.063308 | \n", + "-0.412793 | \n", + "0.452684 | \n", + "-1.906647 | \n", + "1.962141 | \n", + "-0.223039 | \n", + "
| 2 | \n", + "Artefact | \n", + "66 | \n", + "1116.500000 | \n", + "362.000000 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.093582 | \n", + "-0.323180 | \n", + "-0.663069 | \n", + "-1.427502 | \n", + "-0.901764 | \n", + "-0.355080 | \n", + "0.418053 | \n", + "-2.298449 | \n", + "1.098266 | \n", + "-0.069326 | \n", + "
| 3 | \n", + "Artefact | \n", + "66 | \n", + "1106.348485 | \n", + "370.469697 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "0.943948 | \n", + "-0.211267 | \n", + "-0.346355 | \n", + "-1.365543 | \n", + "-0.276932 | \n", + "0.023856 | \n", + "0.376514 | \n", + "-1.700348 | \n", + "1.833686 | \n", + "-0.625385 | \n", + "
| 4 | \n", + "MetaphaseAlignment | \n", + "98 | \n", + "937.692308 | \n", + "521.048077 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "0.947300 | \n", + "-0.564136 | \n", + "0.333336 | \n", + "-1.584454 | \n", + "0.891666 | \n", + "1.223252 | \n", + "-0.359166 | \n", + "-0.826366 | \n", + "2.115734 | \n", + "-1.241848 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 4648 | \n", + "SmallIrregular | \n", + "175 | \n", + "1065.846154 | \n", + "570.123077 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.691697 | \n", + "0.809051 | \n", + "-0.522286 | \n", + "-0.956816 | \n", + "0.112946 | \n", + "-0.087137 | \n", + "-1.078033 | \n", + "0.191389 | \n", + "-0.921300 | \n", + "1.250694 | \n", + "
| 4649 | \n", + "SmallIrregular | \n", + "179 | \n", + "1095.894737 | \n", + "580.771930 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "0.014888 | \n", + "2.423067 | \n", + "-0.530521 | \n", + "-1.026853 | \n", + "0.021895 | \n", + "-0.550902 | \n", + "-1.224869 | \n", + "-0.410984 | \n", + "-0.717952 | \n", + "2.297320 | \n", + "
| 4650 | \n", + "SmallIrregular | \n", + "194 | \n", + "323.269231 | \n", + "622.641026 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "1.127832 | \n", + "0.492408 | \n", + "-0.531921 | \n", + "-0.766331 | \n", + "0.286463 | \n", + "0.493081 | \n", + "0.520599 | \n", + "-0.713538 | \n", + "0.553553 | \n", + "0.480614 | \n", + "
| 4651 | \n", + "SmallIrregular | \n", + "266 | \n", + "368.027397 | \n", + "893.575342 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "0.410533 | \n", + "1.964066 | \n", + "-0.833740 | \n", + "-0.246026 | \n", + "0.984373 | \n", + "0.755903 | \n", + "0.129754 | \n", + "-0.148277 | \n", + "-0.587435 | \n", + "2.032008 | \n", + "
| 4652 | \n", + "SmallIrregular | \n", + "273 | \n", + "348.283784 | \n", + "934.040541 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.041231 | \n", + "0.998568 | \n", + "0.006131 | \n", + "-0.857846 | \n", + "1.163148 | \n", + "0.904470 | \n", + "-0.321917 | \n", + "0.480036 | \n", + "0.449932 | \n", + "1.926145 | \n", + "
4653 rows × 1293 columns
\n", + "| \n", - " | Mitocheck_Phenotypic_Class | \n", - "Control_Type | \n", - "Mitocheck_Object_ID | \n", - "Location_Center_X | \n", - "Location_Center_Y | \n", - "Metadata_Plate | \n", - "Metadata_Well | \n", - "Metadata_Site | \n", - "Metadata_Plate_Map_Name | \n", - "Metadata_DNA | \n", - "... | \n", - "efficientnet_1270 | \n", - "efficientnet_1271 | \n", - "efficientnet_1272 | \n", - "efficientnet_1273 | \n", - "efficientnet_1274 | \n", - "efficientnet_1275 | \n", - "efficientnet_1276 | \n", - "efficientnet_1277 | \n", - "efficientnet_1278 | \n", - "efficientnet_1279 | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", - "ADCCM | \n", - "none | \n", - "13.0 | \n", - "262.777778 | \n", - "20.126984 | \n", - "LT0043_48 | \n", - "166_48 | \n", - "1 | \n", - "LT0043_48_166_48 | \n", - "LT0043_48/166/48/LT0043_48_166_48.tif | \n", - "... | \n", - "0.207932 | \n", - "-0.736547 | \n", - "0.010863 | \n", - "0.290715 | \n", - "-0.508518 | \n", - "-0.666912 | \n", - "0.527043 | \n", - "-0.216474 | \n", - "0.659347 | \n", - "-0.692728 | \n", - "
| 1 | \n", - "ADCCM | \n", - "none | \n", - "13.0 | \n", - "239.517241 | \n", - "28.206897 | \n", - "LT0043_48 | \n", - "166_48 | \n", - "1 | \n", - "LT0043_48_166_48 | \n", - "LT0043_48/166/48/LT0043_48_166_48.tif | \n", - "... | \n", - "0.38972 | \n", - "-0.562691 | \n", - "-0.044208 | \n", - "-0.159093 | \n", - "-0.605761 | \n", - "-0.605434 | \n", - "0.3765 | \n", - "-0.496571 | \n", - "0.028506 | \n", - "-0.152331 | \n", - "
| 2 | \n", - "ADCCM | \n", - "none | \n", - "13.0 | \n", - "252.980392 | \n", - "35.862745 | \n", - "LT0043_48 | \n", - "166_48 | \n", - "1 | \n", - "LT0043_48_166_48 | \n", - "LT0043_48/166/48/LT0043_48_166_48.tif | \n", - "... | \n", - "-0.154282 | \n", - "-0.519065 | \n", - "0.584269 | \n", - "0.860831 | \n", - "-0.446671 | \n", - "-0.409693 | \n", - "0.383752 | \n", - "-0.343047 | \n", - "-0.370232 | \n", - "0.267983 | \n", - "
| 3 | \n", - "ADCCM | \n", - "none | \n", - "13.0 | \n", - "258.288462 | \n", - "46.038462 | \n", - "LT0043_48 | \n", - "166_48 | \n", - "1 | \n", - "LT0043_48_166_48 | \n", - "LT0043_48/166/48/LT0043_48_166_48.tif | \n", - "... | \n", - "-0.298543 | \n", - "-0.587031 | \n", - "0.838506 | \n", - "1.16317 | \n", - "-0.083327 | \n", - "-0.20665 | \n", - "0.253444 | \n", - "-0.084782 | \n", - "0.073759 | \n", - "-0.251357 | \n", - "
| 4 | \n", - "Shape3 | \n", - "none | \n", - "10.0 | \n", - "1212.640449 | \n", - "21.314607 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "... | \n", - "1.764085 | \n", - "-0.364659 | \n", - "-0.623983 | \n", - "0.087524 | \n", - "-0.678471 | \n", - "-1.04743 | \n", - "0.1197 | \n", - "0.254014 | \n", - "0.080685 | \n", - "-0.808582 | \n", - "
5 rows × 1293 columns
\n", - "4123 rows × 2 columns
\n", + "4474 rows × 2 columns
\n", "" ], "text/plain": [ " label index\n", - "0 holdout 107\n", - "1 holdout 108\n", - "2 holdout 109\n", - "3 holdout 110\n", - "4 holdout 111\n", + "0 holdout 3291\n", + "1 holdout 3292\n", + "2 holdout 3293\n", + "3 holdout 3294\n", + "4 holdout 3295\n", "... ... ...\n", - "4118 train 4302\n", - "4119 train 4303\n", - "4120 train 4304\n", - "4121 train 4306\n", - "4122 train 4307\n", + "4469 train 4646\n", + "4470 train 4647\n", + "4471 train 4648\n", + "4472 train 4650\n", + "4473 train 4652\n", "\n", - "[4123 rows x 2 columns]" + "[4474 rows x 2 columns]" ] }, "execution_count": 5, @@ -236,6 +231,13 @@ "index_data" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Save indexes" + ] + }, { "cell_type": "code", "execution_count": 6, @@ -243,16 +245,16 @@ "outputs": [], "source": [ "# make results dir for saving\n", - "results_dir = pathlib.Path(\"../results/\")\n", + "results_dir = pathlib.Path(\"indexes/\")\n", "results_dir.mkdir(parents=True, exist_ok=True)\n", "# save indexes as tsv file\n", - "index_data.to_csv(f\"{results_dir}/0.data_split_indexes.tsv\", sep=\"\\t\")" + "index_data.to_csv(f\"{results_dir}/data_split_indexes.tsv\", sep=\"\\t\")" ] } ], "metadata": { "kernelspec": { - "display_name": "Python 3.8.13 ('2.ML_phenotypic_classification')", + "display_name": "Python 3.8.13 ('phenotypic_profiling')", "language": "python", "name": "python3" }, @@ -271,7 +273,7 @@ "orig_nbformat": 4, "vscode": { "interpreter": { - "hash": "4cc408a06ad49ae0c78cd765de22f61d31a0f8b0861ec15e52107dd82d811e52" + "hash": "f9df586d1764dbc68785000a153dad1832127ac564b5e2e4c94e83fc43160b30" } } }, diff --git a/1.split_data/split_data.sh b/1.split_data/split_data.sh new file mode 100644 index 00000000..0b5c5626 --- /dev/null +++ b/1.split_data/split_data.sh @@ -0,0 +1,5 @@ +#!/bin/bash +# Convert notebook to python file and execute +jupyter nbconvert --to python \ + --FilesWriter.build_directory=scripts/nbconverted \ + --execute split_data.ipynb diff --git a/2.analyze_data/2.analyze_data.sh b/2.analyze_data/2.analyze_data.sh deleted file mode 100644 index f3405308..00000000 --- a/2.analyze_data/2.analyze_data.sh +++ /dev/null @@ -1,9 +0,0 @@ -#!/bin/bash -# Step 0: Convert notebook to script -jupyter nbconvert --to=script analyze_training_data.ipynb - -# Step 1: Execute jupyter notebook -jupyter nbconvert --to=html \ - --ExecutePreprocessor.kernel_name=python3 \ - --ExecutePreprocessor.timeout=10000000 \ - --execute analyze_training_data.ipynb diff --git a/2.analyze_data/2.analyze_data_env.yml b/2.analyze_data/2.analyze_data_env.yml deleted file mode 100644 index 8a6a1e02..00000000 --- a/2.analyze_data/2.analyze_data_env.yml +++ /dev/null @@ -1,11 +0,0 @@ -name: 2.analyze_training_data -channels: - - conda-forge -dependencies: - - conda-forge::python=3.8.13 - - conda-forge::jupyter=1.0.0 - - conda-forge::pandas=1.4.2 - - conda-forge::scikit-learn=1.1.1 - - conda-forge::matplotlib=3.5.2 - - conda-forge::seaborn=0.11.2 - - conda-forge::umap-learn=0.5.3 diff --git a/2.analyze_data/README.md b/2.analyze_data/README.md deleted file mode 100644 index a4c2ae91..00000000 --- a/2.analyze_data/README.md +++ /dev/null @@ -1,38 +0,0 @@ -# 2. Analyze Features - -In this module, we present our pipeline for analyzing features. - -### Feature Analysis - -We use [UMAP](https://github.com/lmcinnes/umap) for analyis of features. -UMAP was introduced in [McInnes, L, Healy, J, 2018](https://arxiv.org/abs/1802.03426) as a manifold learning technique for dimension reduction. -We use UMAP to reduce the feature data from 1280 features to 1, 2, and 3 dimensions. - -We use [Matplotlib](https://matplotlib.org/) and [seaborn](https://seaborn.pydata.org/) for data visualization. - -**Note:** Phenotypic classes used for analysis can be changed with the `classes_to_keep` variable in [2.analyze_training_data.ipynb](2.analyze_training_data.ipynb). - -## Step 1: Setup Feature Analysis Environment - -### Step 1a: Create Feature Analysis Environment - -```sh -# Run this command to create the conda environment for feature analysis -conda env create -f 2.analyze_data_env.yml -``` - -### Step 1b: Activate Feature Analysis Environment - -```sh -# Run this command to activate the conda environment for feature analysis -conda activate 2.analyze_training_data -``` - -## Step 2: Execute Feature Analysis Pipeline - -```bash -# Run this script to analyze features -bash 2.analyze_data.sh -``` -**Note:** Running pipeline will produce all intermediate files (located in [results](results/)). -Analysis jupyter notebook ([2.analyze_training_data.ipynb](2.analyze_training_data.ipynb)) will not be updated but the executed notebook ([2.analyze_training_data.html](2.analyze_training_data.html)) will be updated. \ No newline at end of file diff --git a/2.analyze_data/analyze_training_data.html b/2.analyze_data/analyze_training_data.html deleted file mode 100644 index 8407706e..00000000 --- a/2.analyze_data/analyze_training_data.html +++ /dev/null @@ -1,15340 +0,0 @@ - - - - - -analyze_training_data
import numpy as np
-import pathlib
-from sklearn.datasets import load_digits
-from sklearn.model_selection import train_test_split
-from sklearn.preprocessing import StandardScaler
-import matplotlib.pyplot as plt
-from matplotlib.colors import ListedColormap, rgb2hex
-from pylab import cm
-import seaborn as sns
-import pandas as pd
-import umap
-
-from utils.analysisUtils import get_features_data, show_1D_umap, show_2D_umap, show_3D_umap
-# make random numpy operations consistent
-np.random.seed(0)
-
-# create results dir for saving results
-results_dir = pathlib.Path("results/")
-results_dir.mkdir(parents=True, exist_ok=True)
-# load features dataframe
-features_dataframe_path = pathlib.Path("../1.format_data/data/training_data.csv.gz")
-features_dataframe = get_features_data(features_dataframe_path)
-
-# split metadata from features
-metadata_dataframe = features_dataframe.iloc[:,:13]
-features_dataframe = features_dataframe.iloc[:,13:]
-
-features_dataframe
-| - | efficientnet_0 | -efficientnet_1 | -efficientnet_2 | -efficientnet_3 | -efficientnet_4 | -efficientnet_5 | -efficientnet_6 | -efficientnet_7 | -efficientnet_8 | -efficientnet_9 | -... | -efficientnet_1270 | -efficientnet_1271 | -efficientnet_1272 | -efficientnet_1273 | -efficientnet_1274 | -efficientnet_1275 | -efficientnet_1276 | -efficientnet_1277 | -efficientnet_1278 | -efficientnet_1279 | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | -0.006205 | -0.119546 | -0.905428 | --0.672271 | --0.068963 | -1.757287 | -0.124336 | -0.593695 | -0.274280 | --1.274982 | -... | -1.764085 | --0.364659 | --0.623983 | -0.087524 | --0.678471 | --1.047430 | -0.119700 | -0.254014 | -0.080685 | --0.808582 | -
| 5 | -2.378942 | --0.955787 | --0.691866 | --0.397104 | --0.616975 | -0.648150 | --0.670943 | --0.592767 | --0.990411 | --0.380712 | -... | --0.030402 | --0.306105 | -0.471312 | -1.111647 | --0.395580 | -0.265579 | -0.337486 | --0.728758 | -0.519263 | -1.143726 | -
| 6 | --0.976226 | -2.157527 | --0.278376 | --0.680561 | -1.744093 | --0.456953 | --0.296961 | --0.709488 | -0.249411 | -1.771207 | -... | --2.070584 | --0.419038 | --0.716160 | -2.525790 | --0.300407 | -0.243762 | -0.270543 | -0.473745 | --1.024547 | --0.401801 | -
| 7 | --1.378884 | -1.122315 | --0.569486 | --0.368786 | -0.201950 | --0.491015 | -0.692530 | --0.391879 | --0.471718 | -0.897925 | -... | --1.264048 | --0.678396 | -0.076916 | -3.142620 | -0.202174 | -0.331271 | -0.567700 | -0.072269 | --1.715632 | -1.303155 | -
| 8 | --1.909268 | --0.839781 | --0.552060 | --0.529506 | -0.837143 | --0.428041 | --0.459263 | --0.892607 | -0.132191 | -1.081521 | -... | --0.834010 | --0.404291 | -0.839559 | -0.230029 | --0.322646 | --0.254167 | --0.602655 | --0.273222 | --0.722049 | -0.554533 | -
| ... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -
| 4303 | --0.116541 | --0.629463 | -1.401698 | --0.489478 | --2.831115 | --0.642692 | -0.988942 | --0.719675 | --0.754563 | --1.002060 | -... | --0.010054 | -2.490791 | -0.112932 | --0.448705 | --0.573112 | --1.219449 | -0.756078 | --0.434373 | --0.617329 | -2.989479 | -
| 4304 | -1.059086 | --0.224794 | --0.530644 | -0.240305 | --3.130908 | --0.178424 | -0.143485 | -1.416218 | --0.976807 | -0.024085 | -... | -0.828838 | -2.328690 | -2.365700 | --1.219878 | --0.377726 | -0.285707 | -0.072360 | --0.101487 | -0.592109 | --0.326425 | -
| 4305 | -1.071799 | --0.186700 | -0.053190 | --0.546116 | --0.483472 | -1.296396 | --0.615709 | --0.928396 | --0.879711 | --0.864035 | -... | -0.342158 | -1.118108 | -2.618269 | --1.146326 | --0.574519 | -0.284514 | -0.491826 | --0.489022 | -0.969788 | --0.492233 | -
| 4306 | -0.689590 | -0.097733 | --0.615206 | -1.272017 | -1.094201 | -0.710853 | -0.436329 | -1.444259 | --0.527824 | -0.413573 | -... | --0.890952 | -0.301522 | -0.345463 | -0.594489 | -0.737245 | -3.037339 | --0.636915 | -0.061156 | -1.849867 | --0.896322 | -
| 4307 | -0.807782 | --0.023426 | --0.958250 | -0.650229 | -0.604586 | -0.538085 | --0.179938 | --0.469140 | --0.636907 | --0.601189 | -... | -0.116183 | -0.073442 | --0.035741 | --0.020786 | -0.599503 | -2.253533 | --0.473317 | -0.022974 | -1.555225 | --0.743614 | -
4123 rows × 1280 columns
-metadata_dataframe["Mitocheck_Phenotypic_Class"].value_counts()
-Polylobed 1437 -Binuclear 547 -Grape 428 -Prometaphase 327 -Interphase 306 -Artefact 243 -Apoptosis 186 -SmallIrregular 165 -MetaphaseAlignment 160 -Hole 105 -Metaphase 65 -Large 48 -Folded 42 -Elongated 33 -UndefinedCondensed 31 -Name: Mitocheck_Phenotypic_Class, dtype: int64-
classes_to_keep = [
- "Polylobed",
- "Binuclear",
- "Grape",
- "Prometaphase",
- "Interphase",
- "Artefact",
- "Apoptosis",
- "SmallIrregular",
- "MetaphaseAlignment",
- "Hole",
- "Metaphase",
- "Large",
- "Folded",
- "Elongated",
- "UndefinedCondensed",
-]
-
-features_dataframe = features_dataframe.loc[
- metadata_dataframe["Mitocheck_Phenotypic_Class"].isin(classes_to_keep)
-]
-metadata_dataframe = metadata_dataframe.loc[
- metadata_dataframe["Mitocheck_Phenotypic_Class"].isin(classes_to_keep)
-]
-features_dataframe.shape
-(4123, 1280)-
phenotypic_classes = metadata_dataframe["Mitocheck_Phenotypic_Class"]
-show_1D_umap(features_dataframe, phenotypic_classes, results_dir)
-phenotypic_classes = metadata_dataframe["Mitocheck_Phenotypic_Class"]
-show_2D_umap(features_dataframe, phenotypic_classes, results_dir)
-phenotypic_classes = metadata_dataframe["Mitocheck_Phenotypic_Class"]
-show_3D_umap(features_dataframe, phenotypic_classes, results_dir)
-| \n", - " | efficientnet_0 | \n", - "efficientnet_1 | \n", - "efficientnet_2 | \n", - "efficientnet_3 | \n", - "efficientnet_4 | \n", - "efficientnet_5 | \n", - "efficientnet_6 | \n", - "efficientnet_7 | \n", - "efficientnet_8 | \n", - "efficientnet_9 | \n", - "... | \n", - "efficientnet_1270 | \n", - "efficientnet_1271 | \n", - "efficientnet_1272 | \n", - "efficientnet_1273 | \n", - "efficientnet_1274 | \n", - "efficientnet_1275 | \n", - "efficientnet_1276 | \n", - "efficientnet_1277 | \n", - "efficientnet_1278 | \n", - "efficientnet_1279 | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | \n", - "0.006205 | \n", - "0.119546 | \n", - "0.905428 | \n", - "-0.672271 | \n", - "-0.068963 | \n", - "1.757287 | \n", - "0.124336 | \n", - "0.593695 | \n", - "0.274280 | \n", - "-1.274982 | \n", - "... | \n", - "1.764085 | \n", - "-0.364659 | \n", - "-0.623983 | \n", - "0.087524 | \n", - "-0.678471 | \n", - "-1.047430 | \n", - "0.119700 | \n", - "0.254014 | \n", - "0.080685 | \n", - "-0.808582 | \n", - "
| 5 | \n", - "2.378942 | \n", - "-0.955787 | \n", - "-0.691866 | \n", - "-0.397104 | \n", - "-0.616975 | \n", - "0.648150 | \n", - "-0.670943 | \n", - "-0.592767 | \n", - "-0.990411 | \n", - "-0.380712 | \n", - "... | \n", - "-0.030402 | \n", - "-0.306105 | \n", - "0.471312 | \n", - "1.111647 | \n", - "-0.395580 | \n", - "0.265579 | \n", - "0.337486 | \n", - "-0.728758 | \n", - "0.519263 | \n", - "1.143726 | \n", - "
| 6 | \n", - "-0.976226 | \n", - "2.157527 | \n", - "-0.278376 | \n", - "-0.680561 | \n", - "1.744093 | \n", - "-0.456953 | \n", - "-0.296961 | \n", - "-0.709488 | \n", - "0.249411 | \n", - "1.771207 | \n", - "... | \n", - "-2.070584 | \n", - "-0.419038 | \n", - "-0.716160 | \n", - "2.525790 | \n", - "-0.300407 | \n", - "0.243762 | \n", - "0.270543 | \n", - "0.473745 | \n", - "-1.024547 | \n", - "-0.401801 | \n", - "
| 7 | \n", - "-1.378884 | \n", - "1.122315 | \n", - "-0.569486 | \n", - "-0.368786 | \n", - "0.201950 | \n", - "-0.491015 | \n", - "0.692530 | \n", - "-0.391879 | \n", - "-0.471718 | \n", - "0.897925 | \n", - "... | \n", - "-1.264048 | \n", - "-0.678396 | \n", - "0.076916 | \n", - "3.142620 | \n", - "0.202174 | \n", - "0.331271 | \n", - "0.567700 | \n", - "0.072269 | \n", - "-1.715632 | \n", - "1.303155 | \n", - "
| 8 | \n", - "-1.909268 | \n", - "-0.839781 | \n", - "-0.552060 | \n", - "-0.529506 | \n", - "0.837143 | \n", - "-0.428041 | \n", - "-0.459263 | \n", - "-0.892607 | \n", - "0.132191 | \n", - "1.081521 | \n", - "... | \n", - "-0.834010 | \n", - "-0.404291 | \n", - "0.839559 | \n", - "0.230029 | \n", - "-0.322646 | \n", - "-0.254167 | \n", - "-0.602655 | \n", - "-0.273222 | \n", - "-0.722049 | \n", - "0.554533 | \n", - "
| ... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "
| 4303 | \n", - "-0.116541 | \n", - "-0.629463 | \n", - "1.401698 | \n", - "-0.489478 | \n", - "-2.831115 | \n", - "-0.642692 | \n", - "0.988942 | \n", - "-0.719675 | \n", - "-0.754563 | \n", - "-1.002060 | \n", - "... | \n", - "-0.010054 | \n", - "2.490791 | \n", - "0.112932 | \n", - "-0.448705 | \n", - "-0.573112 | \n", - "-1.219449 | \n", - "0.756078 | \n", - "-0.434373 | \n", - "-0.617329 | \n", - "2.989479 | \n", - "
| 4304 | \n", - "1.059086 | \n", - "-0.224794 | \n", - "-0.530644 | \n", - "0.240305 | \n", - "-3.130908 | \n", - "-0.178424 | \n", - "0.143485 | \n", - "1.416218 | \n", - "-0.976807 | \n", - "0.024085 | \n", - "... | \n", - "0.828838 | \n", - "2.328690 | \n", - "2.365700 | \n", - "-1.219878 | \n", - "-0.377726 | \n", - "0.285707 | \n", - "0.072360 | \n", - "-0.101487 | \n", - "0.592109 | \n", - "-0.326425 | \n", - "
| 4305 | \n", - "1.071799 | \n", - "-0.186700 | \n", - "0.053190 | \n", - "-0.546116 | \n", - "-0.483472 | \n", - "1.296396 | \n", - "-0.615709 | \n", - "-0.928396 | \n", - "-0.879711 | \n", - "-0.864035 | \n", - "... | \n", - "0.342158 | \n", - "1.118108 | \n", - "2.618269 | \n", - "-1.146326 | \n", - "-0.574519 | \n", - "0.284514 | \n", - "0.491826 | \n", - "-0.489022 | \n", - "0.969788 | \n", - "-0.492233 | \n", - "
| 4306 | \n", - "0.689590 | \n", - "0.097733 | \n", - "-0.615206 | \n", - "1.272017 | \n", - "1.094201 | \n", - "0.710853 | \n", - "0.436329 | \n", - "1.444259 | \n", - "-0.527824 | \n", - "0.413573 | \n", - "... | \n", - "-0.890952 | \n", - "0.301522 | \n", - "0.345463 | \n", - "0.594489 | \n", - "0.737245 | \n", - "3.037339 | \n", - "-0.636915 | \n", - "0.061156 | \n", - "1.849867 | \n", - "-0.896322 | \n", - "
| 4307 | \n", - "0.807782 | \n", - "-0.023426 | \n", - "-0.958250 | \n", - "0.650229 | \n", - "0.604586 | \n", - "0.538085 | \n", - "-0.179938 | \n", - "-0.469140 | \n", - "-0.636907 | \n", - "-0.601189 | \n", - "... | \n", - "0.116183 | \n", - "0.073442 | \n", - "-0.035741 | \n", - "-0.020786 | \n", - "0.599503 | \n", - "2.253533 | \n", - "-0.473317 | \n", - "0.022974 | \n", - "1.555225 | \n", - "-0.743614 | \n", - "
4123 rows × 1280 columns
\n", - "| \n", + " | Mitocheck_Phenotypic_Class | \n", + "Mitocheck_Object_ID | \n", + "Location_Center_X | \n", + "Location_Center_Y | \n", + "Metadata_Plate | \n", + "Metadata_Well | \n", + "Metadata_Frame | \n", + "Metadata_Site | \n", + "Metadata_Plate_Map_Name | \n", + "Metadata_DNA | \n", + "... | \n", + "efficientnet_1270 | \n", + "efficientnet_1271 | \n", + "efficientnet_1272 | \n", + "efficientnet_1273 | \n", + "efficientnet_1274 | \n", + "efficientnet_1275 | \n", + "efficientnet_1276 | \n", + "efficientnet_1277 | \n", + "efficientnet_1278 | \n", + "efficientnet_1279 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "MetaphaseAlignment | \n", + "11 | \n", + "572.214286 | \n", + "58.185714 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.048350 | \n", + "-0.721622 | \n", + "0.749788 | \n", + "-1.377590 | \n", + "0.454974 | \n", + "0.188488 | \n", + "0.141427 | \n", + "-1.553405 | \n", + "2.346107 | \n", + "-1.774278 | \n", + "
| 1 | \n", + "Artefact | \n", + "66 | \n", + "1117.070423 | \n", + "342.732394 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.172767 | \n", + "-0.290257 | \n", + "-0.709041 | \n", + "-1.431541 | \n", + "-0.063308 | \n", + "-0.412793 | \n", + "0.452684 | \n", + "-1.906647 | \n", + "1.962141 | \n", + "-0.223039 | \n", + "
| 2 | \n", + "Artefact | \n", + "66 | \n", + "1116.500000 | \n", + "362.000000 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.093582 | \n", + "-0.323180 | \n", + "-0.663069 | \n", + "-1.427502 | \n", + "-0.901764 | \n", + "-0.355080 | \n", + "0.418053 | \n", + "-2.298449 | \n", + "1.098266 | \n", + "-0.069326 | \n", + "
| 3 | \n", + "Artefact | \n", + "66 | \n", + "1106.348485 | \n", + "370.469697 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "0.943948 | \n", + "-0.211267 | \n", + "-0.346355 | \n", + "-1.365543 | \n", + "-0.276932 | \n", + "0.023856 | \n", + "0.376514 | \n", + "-1.700348 | \n", + "1.833686 | \n", + "-0.625385 | \n", + "
| 4 | \n", + "MetaphaseAlignment | \n", + "98 | \n", + "937.692308 | \n", + "521.048077 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "0.947300 | \n", + "-0.564136 | \n", + "0.333336 | \n", + "-1.584454 | \n", + "0.891666 | \n", + "1.223252 | \n", + "-0.359166 | \n", + "-0.826366 | \n", + "2.115734 | \n", + "-1.241848 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 4646 | \n", + "SmallIrregular | \n", + "160 | \n", + "1105.826923 | \n", + "536.173077 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.397249 | \n", + "-0.565566 | \n", + "-0.588207 | \n", + "-0.944316 | \n", + "1.137498 | \n", + "-0.536326 | \n", + "-1.618058 | \n", + "0.579486 | \n", + "-1.083401 | \n", + "1.938486 | \n", + "
| 4647 | \n", + "SmallIrregular | \n", + "170 | \n", + "1082.461538 | \n", + "553.169231 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.295010 | \n", + "0.310557 | \n", + "0.524240 | \n", + "-1.558440 | \n", + "-0.013856 | \n", + "-0.466041 | \n", + "-3.544024 | \n", + "0.174894 | \n", + "-0.085268 | \n", + "1.764378 | \n", + "
| 4648 | \n", + "SmallIrregular | \n", + "175 | \n", + "1065.846154 | \n", + "570.123077 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.691697 | \n", + "0.809051 | \n", + "-0.522286 | \n", + "-0.956816 | \n", + "0.112946 | \n", + "-0.087137 | \n", + "-1.078033 | \n", + "0.191389 | \n", + "-0.921300 | \n", + "1.250694 | \n", + "
| 4650 | \n", + "SmallIrregular | \n", + "194 | \n", + "323.269231 | \n", + "622.641026 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "1.127832 | \n", + "0.492408 | \n", + "-0.531921 | \n", + "-0.766331 | \n", + "0.286463 | \n", + "0.493081 | \n", + "0.520599 | \n", + "-0.713538 | \n", + "0.553553 | \n", + "0.480614 | \n", + "
| 4652 | \n", + "SmallIrregular | \n", + "273 | \n", + "348.283784 | \n", + "934.040541 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.041231 | \n", + "0.998568 | \n", + "0.006131 | \n", + "-0.857846 | \n", + "1.163148 | \n", + "0.904470 | \n", + "-0.321917 | \n", + "0.480036 | \n", + "0.449932 | \n", + "1.926145 | \n", + "
3398 rows × 1293 columns
\n", + "import pandas as pd
-import numpy as np
-import pathlib
-from typing import Tuple, Any, List, Union
-
-from sklearn.utils import shuffle
-
-import sys
-# adding utils to system path
-sys.path.insert(0, '../utils')
-from MlPipelineUtils import get_features_data, get_random_images_indexes, get_representative_images, get_image_indexes
-# set numpy seed to make random operations reproduceable
-np.random.seed(0)
-
-# load x (features) and y (labels) dataframes
-load_path = pathlib.Path("../../1.format_data/data/training_data.csv.gz")
-training_data = get_features_data(load_path)
-print(training_data.shape)
-
-# number of images to holdout
-num_holdout_images = 5
-# ratio of data to be reserved for testing (ex 0.15 = 15%)
-test_ratio = 0.15
-(4123, 1292) --
# remove holdout indexes
-images = get_representative_images(training_data, num_holdout_images, 10000)
-holdout_image_indexes = get_image_indexes(training_data, images)
-training_data = training_data.drop(pd.Index(data=holdout_image_indexes))
-print(training_data.shape)
-(3926, 1292) --
# remove test indexes
-# test_data is pandas dataframe with test split, stratified by Mitocheck_Phenotypic_Class
-test_data = training_data.groupby("Mitocheck_Phenotypic_Class", group_keys=False).apply(
- lambda x: x.sample(frac=test_ratio)
-)
-test_indexes = test_data.index
-training_data = training_data.drop(pd.Index(data=test_indexes))
-
-train_indexes = np.array(training_data.index)
-print(training_data.shape)
-(3338, 1292) --
# create pandas dataframe with all indexes and their respective labels
-index_data = []
-for index in holdout_image_indexes:
- index_data.append({"label": "holdout", "index": index})
-for index in test_indexes:
- index_data.append({"label": "test", "index": index})
-for index in train_indexes:
- index_data.append({"label": "train", "index": index})
-index_data = pd.DataFrame(index_data)
-index_data
-| - | label | -index | -
|---|---|---|
| 0 | -holdout | -107 | -
| 1 | -holdout | -108 | -
| 2 | -holdout | -109 | -
| 3 | -holdout | -110 | -
| 4 | -holdout | -111 | -
| ... | -... | -... | -
| 4118 | -train | -4302 | -
| 4119 | -train | -4303 | -
| 4120 | -train | -4304 | -
| 4121 | -train | -4306 | -
| 4122 | -train | -4307 | -
4123 rows × 2 columns
-# make results dir for saving
-results_dir = pathlib.Path("../results/")
-results_dir.mkdir(parents=True, exist_ok=True)
-# save indexes as tsv file
-index_data.to_csv(f"{results_dir}/0.data_split_indexes.tsv", sep="\t")
-import pandas as pd
-import numpy as np
-import pathlib
-
-from sklearn.linear_model import LogisticRegression
-from sklearn.model_selection import (
- StratifiedKFold,
- GridSearchCV,
-)
-from sklearn.utils import shuffle
-from joblib import dump
-
-import sys
-# adding utils to system path
-sys.path.insert(0, '../utils')
-from MlPipelineUtils import get_features_data, get_dataset, get_X_y_data
-# set numpy seed to make random operations reproduceable
-np.random.seed(0)
-
-results_dir = pathlib.Path("../results/")
-
-# load training data from indexes and features dataframe
-data_split_path = pathlib.Path(f"{results_dir}/0.data_split_indexes.tsv")
-features_dataframe_path = pathlib.Path("../../1.format_data/data/training_data.csv.gz")
-
-features_dataframe = get_features_data(features_dataframe_path)
-data_split_indexes = pd.read_csv(data_split_path, sep="\t", index_col=0)
-
-training_data = get_dataset(features_dataframe, data_split_indexes, "train")
-training_data
-| - | Mitocheck_Phenotypic_Class | -Mitocheck_Object_ID | -Location_Center_X | -Location_Center_Y | -Metadata_Plate | -Metadata_Well | -Metadata_Site | -Metadata_Plate_Map_Name | -Metadata_DNA | -Metadata_Gene | -... | -efficientnet_1270 | -efficientnet_1271 | -efficientnet_1272 | -efficientnet_1273 | -efficientnet_1274 | -efficientnet_1275 | -efficientnet_1276 | -efficientnet_1277 | -efficientnet_1278 | -efficientnet_1279 | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | -Polylobed | -10.0 | -1212.640449 | -21.314607 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | -1.764085 | --0.364659 | --0.623983 | -0.087524 | --0.678471 | --1.047430 | -0.119700 | -0.254014 | -0.080685 | --0.808582 | -
| 5 | -MetaphaseAlignment | -42.0 | -69.902174 | -104.782609 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --0.030402 | --0.306105 | -0.471312 | -1.111647 | --0.395580 | -0.265579 | -0.337486 | --0.728758 | -0.519263 | -1.143726 | -
| 6 | -Interphase | -72.0 | -517.024390 | -159.317073 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --2.070584 | --0.419038 | --0.716160 | -2.525790 | --0.300407 | -0.243762 | -0.270543 | -0.473745 | --1.024547 | --0.401801 | -
| 7 | -Interphase | -85.0 | -1155.936170 | -191.180851 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --1.264048 | --0.678396 | -0.076916 | -3.142620 | -0.202174 | -0.331271 | -0.567700 | -0.072269 | --1.715632 | -1.303155 | -
| 8 | -Artefact | -100.0 | -748.324675 | -220.935065 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --0.834010 | --0.404291 | -0.839559 | -0.230029 | --0.322646 | --0.254167 | --0.602655 | --0.273222 | --0.722049 | -0.554533 | -
| ... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -
| 4302 | -SmallIrregular | -70.0 | -645.173913 | -664.536232 | -LT0106_02 | -287_6 | -1 | -LT0106_02_287_6 | -LT0106_02/287/6/LT0106_02_287_6.tif | -ENSG00000186143 | -... | -0.481624 | --0.066337 | --0.298825 | --1.073172 | --0.263557 | --0.922345 | -0.761749 | -0.721974 | -1.400016 | --0.244034 | -
| 4303 | -SmallIrregular | -37.0 | -828.268657 | -338.328358 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | --0.010054 | -2.490791 | -0.112932 | --0.448705 | --0.573112 | --1.219449 | -0.756078 | --0.434373 | --0.617329 | -2.989479 | -
| 4304 | -SmallIrregular | -45.0 | -62.742424 | -384.424242 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | -0.828838 | -2.328690 | -2.365700 | --1.219878 | --0.377726 | -0.285707 | -0.072360 | --0.101487 | -0.592109 | --0.326425 | -
| 4306 | -SmallIrregular | -52.0 | -105.014085 | -429.056338 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | --0.890952 | -0.301522 | -0.345463 | -0.594489 | -0.737245 | -3.037339 | --0.636915 | -0.061156 | -1.849867 | --0.896322 | -
| 4307 | -SmallIrregular | -55.0 | -93.971429 | -469.214286 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | -0.116183 | -0.073442 | --0.035741 | --0.020786 | -0.599503 | -2.253533 | --0.473317 | -0.022974 | -1.555225 | --0.743614 | -
3338 rows × 1292 columns
-X, y = get_X_y_data(training_data)
-
-print(X.shape)
-print(y.shape)
-
-# create stratified data sets for k-fold cross validation
-straified_k_folds = StratifiedKFold(n_splits=10, shuffle=False)
-(3338, 1280) -(3338,) --
# create logistic regression model with following parameters
-log_reg_model = LogisticRegression(
- penalty="elasticnet", solver="saga", max_iter=100, n_jobs=-1, random_state=0
-)
-# hypertune parameters with GridSearchCV
-parameters = {"C": np.logspace(-3, 3, 7), "l1_ratio": np.linspace(0, 1, 11)}
-#parameters = {"C": [0.1], "l1_ratio": [0.0]}
-print(f"Parameters being tested: {parameters}")
-grid_search_cv = GridSearchCV(
- log_reg_model, parameters, cv=straified_k_folds, n_jobs=-1, scoring="f1_weighted",
-)
-grid_search_cv = grid_search_cv.fit(X, y)
-Parameters being tested: {'C': array([1.e-03, 1.e-02, 1.e-01, 1.e+00, 1.e+01, 1.e+02, 1.e+03]), 'l1_ratio': array([0. , 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1. ])}
-
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-
-print(f"Best parameters: {grid_search_cv.best_params_}")
-print(f"Score of best estimator: {grid_search_cv.best_score_}")
-Best parameters: {'C': 1.0, 'l1_ratio': 0.8}
-Score of best estimator: 0.8015085681885845
-
-# save final estimator
-dump(grid_search_cv.best_estimator_, f"{results_dir}/1.log_reg_model.joblib")
-['../results/1.log_reg_model.joblib']-
X, y = get_X_y_data(training_data)
-
-print(X.shape)
-print(y.shape)
-
-# shuffle columns of X (features) dataframe independently to create shuffled baseline
-for column in X.T:
- np.random.shuffle(column)
-
-# create stratified data sets for k-fold cross validation
-straified_k_folds = StratifiedKFold(n_splits=10, shuffle=False)
-(3338, 1280) -(3338,) --
# create logistic regression model with following parameters
-log_reg_model = LogisticRegression(
- penalty="elasticnet", solver="saga", max_iter=100, n_jobs=-1, random_state=0
-)
-# hypertune parameters with GridSearchCV
-parameters = {"C": np.logspace(-3, 3, 7), "l1_ratio": np.linspace(0, 1, 11)}
-#parameters = {"C": [1.0], "l1_ratio": [0.8]}
-print(f"Parameters being tested: {parameters}")
-grid_search_cv = GridSearchCV(
- log_reg_model, parameters, cv=straified_k_folds, n_jobs=-1, scoring="f1_weighted",
-)
-grid_search_cv = grid_search_cv.fit(X, y)
-Parameters being tested: {'C': array([1.e-03, 1.e-02, 1.e-01, 1.e+00, 1.e+01, 1.e+02, 1.e+03]), 'l1_ratio': array([0. , 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1. ])}
-
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/sklearn/linear_model/_sag.py:328: ConvergenceWarning: The max_iter was reached which means the coef_ did not converge
- warnings.warn("The max_iter was reached which means "
-
-print(f"Best parameters: {grid_search_cv.best_params_}")
-print(f"Score of best estimator: {grid_search_cv.best_score_}")
-Best parameters: {'C': 0.01, 'l1_ratio': 0.1}
-Score of best estimator: 0.19943621509186493
-
-# save final estimator
-dump(grid_search_cv.best_estimator_, f"{results_dir}/1.shuffled_baseline_log_reg_model.joblib")
-['../results/1.shuffled_baseline_log_reg_model.joblib']-
import pandas as pd
-import numpy as np
-import pathlib
-
-from joblib import load
-
-import sys
-# adding utils to system path
-sys.path.insert(0, '../utils')
-from MlPipelineUtils import (
- get_features_data,
- get_dataset,
- get_X_y_data,
- evaluate_model_cm,
- evaluate_model_score
-)
-
-from sklearn.metrics import f1_score
-# set numpy seed to make random operations reproduceable
-np.random.seed(0)
-
-results_dir = pathlib.Path("../results/")
-
-log_reg_model_path = pathlib.Path(f"{results_dir}/1.log_reg_model.joblib")
-log_reg_model = load(log_reg_model_path)
-
-# load features data from indexes and features dataframe
-data_split_path = pathlib.Path(f"{results_dir}/0.data_split_indexes.tsv")
-data_split_indexes = pd.read_csv(data_split_path, sep="\t", index_col=0)
-features_dataframe_path = pathlib.Path("../../1.format_data/data/training_data.csv.gz")
-features_dataframe = get_features_data(features_dataframe_path)
-training_data = get_dataset(features_dataframe, data_split_indexes, "train")
-training_data
-| - | Mitocheck_Phenotypic_Class | -Mitocheck_Object_ID | -Location_Center_X | -Location_Center_Y | -Metadata_Plate | -Metadata_Well | -Metadata_Site | -Metadata_Plate_Map_Name | -Metadata_DNA | -Metadata_Gene | -... | -efficientnet_1270 | -efficientnet_1271 | -efficientnet_1272 | -efficientnet_1273 | -efficientnet_1274 | -efficientnet_1275 | -efficientnet_1276 | -efficientnet_1277 | -efficientnet_1278 | -efficientnet_1279 | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | -Polylobed | -10.0 | -1212.640449 | -21.314607 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | -1.764085 | --0.364659 | --0.623983 | -0.087524 | --0.678471 | --1.047430 | -0.119700 | -0.254014 | -0.080685 | --0.808582 | -
| 5 | -MetaphaseAlignment | -42.0 | -69.902174 | -104.782609 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --0.030402 | --0.306105 | -0.471312 | -1.111647 | --0.395580 | -0.265579 | -0.337486 | --0.728758 | -0.519263 | -1.143726 | -
| 6 | -Interphase | -72.0 | -517.024390 | -159.317073 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --2.070584 | --0.419038 | --0.716160 | -2.525790 | --0.300407 | -0.243762 | -0.270543 | -0.473745 | --1.024547 | --0.401801 | -
| 7 | -Interphase | -85.0 | -1155.936170 | -191.180851 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --1.264048 | --0.678396 | -0.076916 | -3.142620 | -0.202174 | -0.331271 | -0.567700 | -0.072269 | --1.715632 | -1.303155 | -
| 8 | -Artefact | -100.0 | -748.324675 | -220.935065 | -LT0043_48 | -166_55 | -1 | -LT0043_48_166_55 | -LT0043_48/166/55/LT0043_48_166_55.tif | -OGG1 | -... | --0.834010 | --0.404291 | -0.839559 | -0.230029 | --0.322646 | --0.254167 | --0.602655 | --0.273222 | --0.722049 | -0.554533 | -
| ... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -
| 4302 | -SmallIrregular | -70.0 | -645.173913 | -664.536232 | -LT0106_02 | -287_6 | -1 | -LT0106_02_287_6 | -LT0106_02/287/6/LT0106_02_287_6.tif | -ENSG00000186143 | -... | -0.481624 | --0.066337 | --0.298825 | --1.073172 | --0.263557 | --0.922345 | -0.761749 | -0.721974 | -1.400016 | --0.244034 | -
| 4303 | -SmallIrregular | -37.0 | -828.268657 | -338.328358 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | --0.010054 | -2.490791 | -0.112932 | --0.448705 | --0.573112 | --1.219449 | -0.756078 | --0.434373 | --0.617329 | -2.989479 | -
| 4304 | -SmallIrregular | -45.0 | -62.742424 | -384.424242 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | -0.828838 | -2.328690 | -2.365700 | --1.219878 | --0.377726 | -0.285707 | -0.072360 | --0.101487 | -0.592109 | --0.326425 | -
| 4306 | -SmallIrregular | -52.0 | -105.014085 | -429.056338 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | --0.890952 | -0.301522 | -0.345463 | -0.594489 | -0.737245 | -3.037339 | --0.636915 | -0.061156 | -1.849867 | --0.896322 | -
| 4307 | -SmallIrregular | -55.0 | -93.971429 | -469.214286 | -LT0106_02 | -287_33 | -1 | -LT0106_02_287_33 | -LT0106_02/287/33/LT0106_02_287_33.tif | -ENSG00000186143 | -... | -0.116183 | -0.073442 | --0.035741 | --0.020786 | -0.599503 | -2.253533 | --0.473317 | -0.022974 | -1.555225 | --0.743614 | -
3338 rows × 1292 columns
-y_train, y_train_pred = evaluate_model_cm(log_reg_model, training_data)
-evaluate_model_score(log_reg_model, training_data)
-testing_data = get_dataset(features_dataframe, data_split_indexes, "test")
-testing_data
-| - | Mitocheck_Phenotypic_Class | -Mitocheck_Object_ID | -Location_Center_X | -Location_Center_Y | -Metadata_Plate | -Metadata_Well | -Metadata_Site | -Metadata_Plate_Map_Name | -Metadata_DNA | -Metadata_Gene | -... | -efficientnet_1270 | -efficientnet_1271 | -efficientnet_1272 | -efficientnet_1273 | -efficientnet_1274 | -efficientnet_1275 | -efficientnet_1276 | -efficientnet_1277 | -efficientnet_1278 | -efficientnet_1279 | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2443 | -Apoptosis | -25.0 | -758.403509 | -177.789474 | -LT0109_38 | -338_80 | -1 | -LT0109_38_338_80 | -LT0109_38/338/80/LT0109_38_338_80.tif | -Eg5 | -... | -0.607199 | --0.274202 | -1.169405 | --0.966883 | --0.601837 | -0.949108 | -0.451148 | --0.030628 | -2.063781 | --0.834666 | -
| 2678 | -Apoptosis | -38.0 | -711.808989 | -228.741573 | -LT0089_01 | -175_71 | -1 | -LT0089_01_175_71 | -LT0089_01/175/71/LT0089_01_175_71.tif | -ENSG00000159763 | -... | -1.164993 | --0.946659 | -0.572112 | --0.004567 | --0.835213 | -2.133637 | --0.028774 | --0.243886 | -1.009789 | --0.648034 | -
| 3747 | -Apoptosis | -72.0 | -212.238095 | -497.206349 | -LT0035_06 | -274_40 | -1 | -LT0035_06_274_40 | -LT0035_06/274/40/LT0035_06_274_40.tif | -PAPPA | -... | -0.430192 | --0.481237 | -1.109703 | --0.988928 | --0.113637 | -0.135545 | -0.161889 | --0.082582 | -1.970815 | --1.736501 | -
| 3985 | -Apoptosis | -230.0 | -614.155172 | -487.448276 | -LT0046_19 | -356_92 | -1 | -LT0046_19_356_92 | -LT0046_19/356/92/LT0046_19_356_92.tif | -RAB8A | -... | --0.757088 | --0.175628 | --0.488741 | -0.917805 | --0.357299 | --0.449019 | -0.430446 | --0.226755 | --1.402885 | -2.495683 | -
| 2609 | -Apoptosis | -43.0 | -709.506329 | -233.936709 | -LT0089_01 | -175_93 | -1 | -LT0089_01_175_93 | -LT0089_01/175/93/LT0089_01_175_93.tif | -ENSG00000159763 | -... | -0.618986 | --0.801459 | --1.107672 | --0.877020 | --0.753891 | -0.590670 | -0.395773 | -0.236221 | -0.585016 | --0.316766 | -
| ... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -
| 679 | -SmallIrregular | -92.0 | -744.358025 | -335.703704 | -LT0030_17 | -184_39 | -1 | -LT0030_17_184_39 | -LT0030_17/184/39/LT0030_17_184_39.tif | -RGR | -... | --0.982763 | -3.694569 | --0.478552 | -0.147297 | -0.290459 | -0.540579 | -0.236525 | -0.182654 | --0.653987 | -2.068226 | -
| 929 | -UndefinedCondensed | -33.0 | -699.371795 | -171.987179 | -LT0038_01 | -245_81 | -1 | -LT0038_01_245_81 | -LT0038_01/245/81/LT0038_01_245_81.tif | -ZADH1 | -... | -0.338874 | -0.310373 | --0.247350 | -0.608342 | --0.786407 | --0.135924 | -0.140324 | -0.298890 | -1.848011 | --1.665887 | -
| 2046 | -UndefinedCondensed | -104.0 | -386.718750 | -666.140625 | -LT0027_44 | -292_47 | -1 | -LT0027_44_292_47 | -LT0027_44/292/47/LT0027_44_292_47.tif | -CDK4 | -... | -0.689116 | -2.833976 | -7.890952 | --1.008122 | --0.206246 | -1.443846 | -0.057667 | -0.098385 | -1.824709 | -0.026545 | -
| 3174 | -UndefinedCondensed | -75.0 | -694.145455 | -270.090909 | -LT0041_32 | -132_74 | -1 | -LT0041_32_132_74 | -LT0041_32/132/74/LT0041_32_132_74.tif | -TRPV1 | -... | -0.335572 | -0.152123 | --0.596092 | --0.183711 | -0.108508 | -1.344167 | -0.562621 | -0.056856 | -0.966724 | -0.466382 | -
| 936 | -UndefinedCondensed | -107.0 | -718.078431 | -539.843137 | -LT0038_01 | -245_81 | -1 | -LT0038_01_245_81 | -LT0038_01/245/81/LT0038_01_245_81.tif | -ZADH1 | -... | --0.338297 | -1.755904 | -0.930533 | --0.316385 | -0.166050 | -0.315580 | -0.491698 | -0.038472 | -1.424863 | -0.372591 | -
588 rows × 1292 columns
-y_test, y_test_pred = evaluate_model_cm(log_reg_model, testing_data)
-evaluate_model_score(log_reg_model, testing_data)
-holdout_data = get_dataset(features_dataframe, data_split_indexes, "holdout")
-X_holdout, y_holdout = get_X_y_data(holdout_data)
-holdout_data
-| - | Mitocheck_Phenotypic_Class | -Mitocheck_Object_ID | -Location_Center_X | -Location_Center_Y | -Metadata_Plate | -Metadata_Well | -Metadata_Site | -Metadata_Plate_Map_Name | -Metadata_DNA | -Metadata_Gene | -... | -efficientnet_1270 | -efficientnet_1271 | -efficientnet_1272 | -efficientnet_1273 | -efficientnet_1274 | -efficientnet_1275 | -efficientnet_1276 | -efficientnet_1277 | -efficientnet_1278 | -efficientnet_1279 | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107 | -Metaphase | -26.0 | -726.985915 | -55.591549 | -LT0043_48 | -166_71 | -1 | -LT0043_48_166_71 | -LT0043_48/166/71/LT0043_48_166_71.tif | -OGG1 | -... | -0.547156 | --0.564286 | --0.498775 | --0.459153 | --0.267186 | --0.903834 | -0.137039 | --0.250470 | -0.186182 | -0.894334 | -
| 108 | -Metaphase | -27.0 | -692.647059 | -56.573529 | -LT0043_48 | -166_71 | -1 | -LT0043_48_166_71 | -LT0043_48/166/71/LT0043_48_166_71.tif | -OGG1 | -... | -0.362015 | -0.653547 | --0.484252 | --0.103905 | -0.016117 | -0.067518 | --0.482488 | --0.180797 | --0.012560 | -0.714005 | -
| 109 | -Large | -34.0 | -1069.488372 | -67.325581 | -LT0043_48 | -166_71 | -1 | -LT0043_48_166_71 | -LT0043_48/166/71/LT0043_48_166_71.tif | -OGG1 | -... | --0.957174 | --0.702799 | --0.110952 | -0.481611 | --0.564111 | --0.491920 | --0.713968 | --0.378968 | --1.607541 | --0.018846 | -
| 110 | -Large | -34.0 | -1079.944444 | -83.657407 | -LT0043_48 | -166_71 | -1 | -LT0043_48_166_71 | -LT0043_48/166/71/LT0043_48_166_71.tif | -OGG1 | -... | --0.740355 | --0.468061 | -0.460456 | -0.404436 | --0.367400 | -0.145327 | --0.438720 | --0.610320 | --2.040199 | -0.572084 | -
| 111 | -Polylobed | -37.0 | -69.404494 | -85.640449 | -LT0043_48 | -166_71 | -1 | -LT0043_48_166_71 | -LT0043_48/166/71/LT0043_48_166_71.tif | -OGG1 | -... | --0.316064 | --0.563183 | --0.086994 | -0.869436 | --0.925559 | --0.858180 | -0.292877 | --0.558834 | --1.691958 | --0.868827 | -
| ... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -... | -
| 1772 | -Grape | -267.0 | -1251.393443 | -858.655738 | -LT0066_19 | -287_87 | -1 | -LT0066_19_287_87 | -LT0066_19/287/87/LT0066_19_287_87.tif | -ch-TOG | -... | -0.630227 | --0.033170 | -0.674193 | --0.972288 | -0.111143 | -0.839345 | --0.389554 | --1.115172 | -0.585561 | --0.512559 | -
| 1773 | -Grape | -267.0 | -1223.225000 | -856.850000 | -LT0066_19 | -287_87 | -1 | -LT0066_19_287_87 | -LT0066_19/287/87/LT0066_19_287_87.tif | -ch-TOG | -... | -0.742571 | --0.538799 | --0.527869 | --1.077660 | -0.107576 | -0.565312 | --0.664639 | --1.189439 | -0.256218 | -0.526649 | -
| 1774 | -Grape | -301.0 | -868.043478 | -935.913043 | -LT0066_19 | -287_87 | -1 | -LT0066_19_287_87 | -LT0066_19/287/87/LT0066_19_287_87.tif | -ch-TOG | -... | -0.773782 | --0.510080 | --0.361932 | -0.073455 | --0.960329 | -0.091533 | --0.232057 | --0.932444 | -0.873170 | -0.352083 | -
| 1775 | -Grape | -301.0 | -886.918033 | -938.065574 | -LT0066_19 | -287_87 | -1 | -LT0066_19_287_87 | -LT0066_19/287/87/LT0066_19_287_87.tif | -ch-TOG | -... | -0.801553 | --0.656001 | --0.361224 | --1.010084 | --1.013769 | --0.237192 | -0.353466 | --0.485507 | -0.757327 | -1.160972 | -
| 1776 | -Grape | -301.0 | -892.712644 | -949.988506 | -LT0066_19 | -287_87 | -1 | -LT0066_19_287_87 | -LT0066_19/287/87/LT0066_19_287_87.tif | -ch-TOG | -... | -0.468277 | --0.597204 | -0.264727 | --1.056952 | --0.716805 | --0.354778 | -0.080909 | --0.883547 | -0.952611 | -1.313567 | -
197 rows × 1292 columns
-y_holdout, y_holdout_pred = evaluate_model_cm(log_reg_model, holdout_data)
-evaluate_model_score(log_reg_model, holdout_data)
-predictions = []
-
-predictions.append(y_train)
-predictions.append(y_train_pred)
-
-predictions.append(y_test)
-predictions.append(y_test_pred)
-
-predictions.append(y_holdout)
-predictions.append(y_holdout_pred)
-
-predictions = pd.DataFrame(predictions)
-predictions.index = ["y_train", "y_train_pred", "y_test", "y_test_pred", "y_holdout", "y_holdout_pred"]
-predictions.to_csv(f"{results_dir}/2.model_predictions.tsv", sep="\t")
-shuffled_baseline_log_reg_model_path = pathlib.Path(f"{results_dir}/1.shuffled_baseline_log_reg_model.joblib")
-shuffled_baseline_log_reg_model = load(shuffled_baseline_log_reg_model_path)
-y_train, y_train_pred = evaluate_model_cm(shuffled_baseline_log_reg_model, training_data)
-evaluate_model_score(shuffled_baseline_log_reg_model, training_data)
-y_test, y_test_pred = evaluate_model_cm(shuffled_baseline_log_reg_model, testing_data)
-evaluate_model_score(shuffled_baseline_log_reg_model, testing_data)
-y_holdout, y_holdout_pred = evaluate_model_cm(shuffled_baseline_log_reg_model, holdout_data)
-evaluate_model_score(shuffled_baseline_log_reg_model, holdout_data)
-predictions = []
-
-predictions.append(y_train)
-predictions.append(y_train_pred)
-
-predictions.append(y_test)
-predictions.append(y_test_pred)
-
-predictions.append(y_holdout)
-predictions.append(y_holdout_pred)
-
-predictions = pd.DataFrame(predictions)
-predictions.index = ["y_train", "y_train_pred", "y_test", "y_test_pred", "y_holdout", "y_holdout_pred"]
-predictions.to_csv(f"{results_dir}/2.shuffled_baseline_model_predictions.tsv", sep="\t")
-import pandas as pd
-import numpy as np
-import pathlib
-
-from joblib import load
-
-import matplotlib.pyplot as plt
-import seaborn as sns
-# set numpy seed to make random operations reproduceable
-np.random.seed(0)
-
-# results dir for loading/saving
-results_dir = pathlib.Path("../results/")
-
-log_reg_model_path = pathlib.Path(f"{results_dir}/1.log_reg_model.joblib")
-log_reg_model = load(log_reg_model_path)
-coefs = np.abs(log_reg_model.coef_)
-coefs = pd.DataFrame(coefs).T
-coefs.columns = log_reg_model.classes_
-
-print(coefs.shape)
-coefs.head()
-(1280, 15) --
| - | Apoptosis | -Artefact | -Binuclear | -Elongated | -Folded | -Grape | -Hole | -Interphase | -Large | -Metaphase | -MetaphaseAlignment | -Polylobed | -Prometaphase | -SmallIrregular | -UndefinedCondensed | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | -0.007781 | -0.011687 | -0.034317 | -0.001899 | -0.006184 | -0.051998 | -1.924336e-07 | -0.016729 | -0.016842 | -0.000000 | -0.054102 | -0.025867 | -0.043135 | -0.001143 | -0.000000 | -
| 1 | -0.000000 | -0.013919 | -0.063511 | -0.000000 | -0.053517 | -0.031211 | -1.229353e-02 | -0.049200 | -0.011379 | -0.008039 | -0.000000 | -0.054810 | -0.000000 | -0.049006 | -0.000000 | -
| 2 | -0.000000 | -0.064619 | -0.020392 | -0.000000 | -0.000000 | -0.007725 | -0.000000e+00 | -0.027128 | -0.000000 | -0.000000 | -0.053954 | -0.112403 | -0.000288 | -0.067893 | -0.005091 | -
| 3 | -0.000000 | -0.018983 | -0.084729 | -0.024991 | -0.000000 | -0.015747 | -4.916031e-02 | -0.184086 | -0.000000 | -0.000000 | -0.012331 | -0.014959 | -0.000000 | -0.004631 | -0.000000 | -
| 4 | -0.032028 | -0.092797 | -0.118880 | -0.000000 | -0.014115 | -0.000000 | -2.232243e-02 | -0.000000 | -0.000000 | -0.059972 | -0.000000 | -0.052804 | -0.023990 | -0.035908 | -0.022203 | -
# display heatmap of average coefs
-plt.figure(figsize=(20, 10))
-ax = sns.heatmap(data=coefs.T)
-# display clustered heatmap of coefficients
-ax = sns.clustermap(data=coefs.T, figsize=(20, 10), row_cluster=True, col_cluster=True)
-ax = ax.fig.suptitle("Clustered Heatmap of Coefficients Matrix")
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/seaborn/matrix.py:654: UserWarning: Clustering large matrix with scipy. Installing `fastcluster` may give better performance. - warnings.warn(msg) --
# display density plot for coefficient values of each class
-sns.set(rc={"figure.figsize": (20, 8)})
-plt.xlim(-0.02, 0.1)
-plt.xlabel("Coefficient Value")
-plt.ylabel("Density")
-plt.title("Density of Coefficient Values Per Phenotpyic Class")
-ax = sns.kdeplot(data=coefs)
-# display average coefficient value vs phenotypic class bar chart
-pheno_class_ordered = coefs.reindex(
- coefs.mean().sort_values(ascending=False).index, axis=1
-)
-sns.set(rc={"figure.figsize": (20, 8)})
-plt.xlabel("Phenotypic Class")
-plt.ylabel("Average Coefficient Value")
-plt.title("Coefficient vs Phenotpyic Class")
-plt.xticks(rotation=90)
-ax = sns.barplot(data=pheno_class_ordered)
-# display average coefficient value vs feature bar chart
-feature_ordered = coefs.T.reindex(
- coefs.T.mean().sort_values(ascending=False).index, axis=1
-)
-sns.set(rc={"figure.figsize": (500, 8)})
-plt.xlabel("Deep Learning Feature Number")
-plt.ylabel("Average Coefficient Value")
-plt.title("Coefficient vs Feature")
-plt.xticks(rotation=90)
-ax = sns.barplot(data=feature_ordered)
-shuffled_baseline_log_reg_model_path = pathlib.Path(f"{results_dir}/1.shuffled_baseline_log_reg_model.joblib")
-shuffled_baseline_log_reg_model = load(shuffled_baseline_log_reg_model_path)
-coefs = np.abs(shuffled_baseline_log_reg_model.coef_)
-coefs = pd.DataFrame(coefs).T
-coefs.columns = shuffled_baseline_log_reg_model.classes_
-
-print(coefs.shape)
-coefs.head()
-(1280, 15) --
| - | Apoptosis | -Artefact | -Binuclear | -Elongated | -Folded | -Grape | -Hole | -Interphase | -Large | -Metaphase | -MetaphaseAlignment | -Polylobed | -Prometaphase | -SmallIrregular | -UndefinedCondensed | -
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | -0.041157 | -0.000000 | -0.000000 | -0.000442 | -0.0 | -0.000000 | -0.000000 | -0.038165 | -0.0 | -0.01883 | -0.000000 | -0.014269 | -0.0 | -0.035469 | -0.0 | -
| 1 | -0.000000 | -0.009617 | -0.000000 | -0.000000 | -0.0 | -0.030018 | -0.000000 | -0.000000 | -0.0 | -0.00000 | -0.003451 | -0.000000 | -0.0 | -0.023251 | -0.0 | -
| 2 | -0.021148 | -0.000000 | -0.000000 | -0.000000 | -0.0 | -0.068392 | -0.000000 | -0.000000 | -0.0 | -0.00000 | -0.000000 | -0.043200 | -0.0 | -0.000000 | -0.0 | -
| 3 | -0.000000 | -0.000000 | -0.000000 | -0.000000 | -0.0 | -0.005190 | -0.000000 | -0.000000 | -0.0 | -0.00000 | -0.006549 | -0.000000 | -0.0 | -0.000000 | -0.0 | -
| 4 | -0.053939 | -0.000000 | -0.030559 | -0.000000 | -0.0 | -0.000000 | -0.014942 | -0.012111 | -0.0 | -0.00000 | -0.000000 | -0.014831 | -0.0 | -0.000000 | -0.0 | -
# display heatmap of average coefs
-plt.figure(figsize=(20, 10))
-ax = sns.heatmap(data=coefs.T)
-# display clustered heatmap of coefficients
-ax = sns.clustermap(data=coefs.T, figsize=(20, 10), row_cluster=True, col_cluster=True)
-ax = ax.fig.suptitle("Clustered Heatmap of Coefficients Matrix")
-/home/roshankern/anaconda3/envs/2.ML_phenotypic_classification/lib/python3.8/site-packages/seaborn/matrix.py:654: UserWarning: Clustering large matrix with scipy. Installing `fastcluster` may give better performance. - warnings.warn(msg) --
# display density plot for coefficient values of each class
-sns.set(rc={"figure.figsize": (20, 8)})
-plt.xlim(-0.02, 0.1)
-plt.xlabel("Coefficient Value")
-plt.ylabel("Density")
-plt.title("Density of Coefficient Values Per Phenotpyic Class")
-ax = sns.kdeplot(data=coefs)
-# display average coefficient value vs phenotypic class bar chart
-pheno_class_ordered = coefs.reindex(
- coefs.mean().sort_values(ascending=False).index, axis=1
-)
-sns.set(rc={"figure.figsize": (20, 8)})
-plt.xlabel("Phenotypic Class")
-plt.ylabel("Average Coefficient Value")
-plt.title("Coefficient vs Phenotpyic Class")
-plt.xticks(rotation=90)
-ax = sns.barplot(data=pheno_class_ordered)
-# display average coefficient value vs feature bar chart
-feature_ordered = coefs.T.reindex(
- coefs.T.mean().sort_values(ascending=False).index, axis=1
-)
-sns.set(rc={"figure.figsize": (500, 8)})
-plt.xlabel("Deep Learning Feature Number")
-plt.ylabel("Average Coefficient Value")
-plt.title("Coefficient vs Feature")
-plt.xticks(rotation=90)
-ax = sns.barplot(data=feature_ordered)
-| \n", - " | Mitocheck_Phenotypic_Class | \n", - "Mitocheck_Object_ID | \n", - "Location_Center_X | \n", - "Location_Center_Y | \n", - "Metadata_Plate | \n", - "Metadata_Well | \n", - "Metadata_Site | \n", - "Metadata_Plate_Map_Name | \n", - "Metadata_DNA | \n", - "Metadata_Gene | \n", - "... | \n", - "efficientnet_1270 | \n", - "efficientnet_1271 | \n", - "efficientnet_1272 | \n", - "efficientnet_1273 | \n", - "efficientnet_1274 | \n", - "efficientnet_1275 | \n", - "efficientnet_1276 | \n", - "efficientnet_1277 | \n", - "efficientnet_1278 | \n", - "efficientnet_1279 | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | \n", - "Polylobed | \n", - "10.0 | \n", - "1212.640449 | \n", - "21.314607 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "1.764085 | \n", - "-0.364659 | \n", - "-0.623983 | \n", - "0.087524 | \n", - "-0.678471 | \n", - "-1.047430 | \n", - "0.119700 | \n", - "0.254014 | \n", - "0.080685 | \n", - "-0.808582 | \n", - "
| 5 | \n", - "MetaphaseAlignment | \n", - "42.0 | \n", - "69.902174 | \n", - "104.782609 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-0.030402 | \n", - "-0.306105 | \n", - "0.471312 | \n", - "1.111647 | \n", - "-0.395580 | \n", - "0.265579 | \n", - "0.337486 | \n", - "-0.728758 | \n", - "0.519263 | \n", - "1.143726 | \n", - "
| 6 | \n", - "Interphase | \n", - "72.0 | \n", - "517.024390 | \n", - "159.317073 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-2.070584 | \n", - "-0.419038 | \n", - "-0.716160 | \n", - "2.525790 | \n", - "-0.300407 | \n", - "0.243762 | \n", - "0.270543 | \n", - "0.473745 | \n", - "-1.024547 | \n", - "-0.401801 | \n", - "
| 7 | \n", - "Interphase | \n", - "85.0 | \n", - "1155.936170 | \n", - "191.180851 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-1.264048 | \n", - "-0.678396 | \n", - "0.076916 | \n", - "3.142620 | \n", - "0.202174 | \n", - "0.331271 | \n", - "0.567700 | \n", - "0.072269 | \n", - "-1.715632 | \n", - "1.303155 | \n", - "
| 8 | \n", - "Artefact | \n", - "100.0 | \n", - "748.324675 | \n", - "220.935065 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-0.834010 | \n", - "-0.404291 | \n", - "0.839559 | \n", - "0.230029 | \n", - "-0.322646 | \n", - "-0.254167 | \n", - "-0.602655 | \n", - "-0.273222 | \n", - "-0.722049 | \n", - "0.554533 | \n", - "
| ... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "
| 4302 | \n", - "SmallIrregular | \n", - "70.0 | \n", - "645.173913 | \n", - "664.536232 | \n", - "LT0106_02 | \n", - "287_6 | \n", - "1 | \n", - "LT0106_02_287_6 | \n", - "LT0106_02/287/6/LT0106_02_287_6.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "0.481624 | \n", - "-0.066337 | \n", - "-0.298825 | \n", - "-1.073172 | \n", - "-0.263557 | \n", - "-0.922345 | \n", - "0.761749 | \n", - "0.721974 | \n", - "1.400016 | \n", - "-0.244034 | \n", - "
| 4303 | \n", - "SmallIrregular | \n", - "37.0 | \n", - "828.268657 | \n", - "338.328358 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "-0.010054 | \n", - "2.490791 | \n", - "0.112932 | \n", - "-0.448705 | \n", - "-0.573112 | \n", - "-1.219449 | \n", - "0.756078 | \n", - "-0.434373 | \n", - "-0.617329 | \n", - "2.989479 | \n", - "
| 4304 | \n", - "SmallIrregular | \n", - "45.0 | \n", - "62.742424 | \n", - "384.424242 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "0.828838 | \n", - "2.328690 | \n", - "2.365700 | \n", - "-1.219878 | \n", - "-0.377726 | \n", - "0.285707 | \n", - "0.072360 | \n", - "-0.101487 | \n", - "0.592109 | \n", - "-0.326425 | \n", - "
| 4306 | \n", - "SmallIrregular | \n", - "52.0 | \n", - "105.014085 | \n", - "429.056338 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "-0.890952 | \n", - "0.301522 | \n", - "0.345463 | \n", - "0.594489 | \n", - "0.737245 | \n", - "3.037339 | \n", - "-0.636915 | \n", - "0.061156 | \n", - "1.849867 | \n", - "-0.896322 | \n", - "
| 4307 | \n", - "SmallIrregular | \n", - "55.0 | \n", - "93.971429 | \n", - "469.214286 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "0.116183 | \n", - "0.073442 | \n", - "-0.035741 | \n", - "-0.020786 | \n", - "0.599503 | \n", - "2.253533 | \n", - "-0.473317 | \n", - "0.022974 | \n", - "1.555225 | \n", - "-0.743614 | \n", - "
3338 rows × 1292 columns
\n", - "| \n", - " | Mitocheck_Phenotypic_Class | \n", - "Mitocheck_Object_ID | \n", - "Location_Center_X | \n", - "Location_Center_Y | \n", - "Metadata_Plate | \n", - "Metadata_Well | \n", - "Metadata_Site | \n", - "Metadata_Plate_Map_Name | \n", - "Metadata_DNA | \n", - "Metadata_Gene | \n", - "... | \n", - "efficientnet_1270 | \n", - "efficientnet_1271 | \n", - "efficientnet_1272 | \n", - "efficientnet_1273 | \n", - "efficientnet_1274 | \n", - "efficientnet_1275 | \n", - "efficientnet_1276 | \n", - "efficientnet_1277 | \n", - "efficientnet_1278 | \n", - "efficientnet_1279 | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | \n", - "Polylobed | \n", - "10.0 | \n", - "1212.640449 | \n", - "21.314607 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "1.764085 | \n", - "-0.364659 | \n", - "-0.623983 | \n", - "0.087524 | \n", - "-0.678471 | \n", - "-1.047430 | \n", - "0.119700 | \n", - "0.254014 | \n", - "0.080685 | \n", - "-0.808582 | \n", - "
| 5 | \n", - "MetaphaseAlignment | \n", - "42.0 | \n", - "69.902174 | \n", - "104.782609 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-0.030402 | \n", - "-0.306105 | \n", - "0.471312 | \n", - "1.111647 | \n", - "-0.395580 | \n", - "0.265579 | \n", - "0.337486 | \n", - "-0.728758 | \n", - "0.519263 | \n", - "1.143726 | \n", - "
| 6 | \n", - "Interphase | \n", - "72.0 | \n", - "517.024390 | \n", - "159.317073 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-2.070584 | \n", - "-0.419038 | \n", - "-0.716160 | \n", - "2.525790 | \n", - "-0.300407 | \n", - "0.243762 | \n", - "0.270543 | \n", - "0.473745 | \n", - "-1.024547 | \n", - "-0.401801 | \n", - "
| 8 | \n", - "Artefact | \n", - "100.0 | \n", - "748.324675 | \n", - "220.935065 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-0.834010 | \n", - "-0.404291 | \n", - "0.839559 | \n", - "0.230029 | \n", - "-0.322646 | \n", - "-0.254167 | \n", - "-0.602655 | \n", - "-0.273222 | \n", - "-0.722049 | \n", - "0.554533 | \n", - "
| 9 | \n", - "Artefact | \n", - "108.0 | \n", - "795.484536 | \n", - "242.752577 | \n", - "LT0043_48 | \n", - "166_55 | \n", - "1 | \n", - "LT0043_48_166_55 | \n", - "LT0043_48/166/55/LT0043_48_166_55.tif | \n", - "OGG1 | \n", - "... | \n", - "-1.406520 | \n", - "0.368818 | \n", - "0.568022 | \n", - "1.618059 | \n", - "-0.320691 | \n", - "0.527715 | \n", - "0.130431 | \n", - "-0.293846 | \n", - "-0.755968 | \n", - "0.025133 | \n", - "
| ... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "
| 4302 | \n", - "SmallIrregular | \n", - "70.0 | \n", - "645.173913 | \n", - "664.536232 | \n", - "LT0106_02 | \n", - "287_6 | \n", - "1 | \n", - "LT0106_02_287_6 | \n", - "LT0106_02/287/6/LT0106_02_287_6.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "0.481624 | \n", - "-0.066337 | \n", - "-0.298825 | \n", - "-1.073172 | \n", - "-0.263557 | \n", - "-0.922345 | \n", - "0.761749 | \n", - "0.721974 | \n", - "1.400016 | \n", - "-0.244034 | \n", - "
| 4303 | \n", - "SmallIrregular | \n", - "37.0 | \n", - "828.268657 | \n", - "338.328358 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "-0.010054 | \n", - "2.490791 | \n", - "0.112932 | \n", - "-0.448705 | \n", - "-0.573112 | \n", - "-1.219449 | \n", - "0.756078 | \n", - "-0.434373 | \n", - "-0.617329 | \n", - "2.989479 | \n", - "
| 4304 | \n", - "SmallIrregular | \n", - "45.0 | \n", - "62.742424 | \n", - "384.424242 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "0.828838 | \n", - "2.328690 | \n", - "2.365700 | \n", - "-1.219878 | \n", - "-0.377726 | \n", - "0.285707 | \n", - "0.072360 | \n", - "-0.101487 | \n", - "0.592109 | \n", - "-0.326425 | \n", - "
| 4306 | \n", - "SmallIrregular | \n", - "52.0 | \n", - "105.014085 | \n", - "429.056338 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "-0.890952 | \n", - "0.301522 | \n", - "0.345463 | \n", - "0.594489 | \n", - "0.737245 | \n", - "3.037339 | \n", - "-0.636915 | \n", - "0.061156 | \n", - "1.849867 | \n", - "-0.896322 | \n", - "
| 4307 | \n", - "SmallIrregular | \n", - "55.0 | \n", - "93.971429 | \n", - "469.214286 | \n", - "LT0106_02 | \n", - "287_33 | \n", - "1 | \n", - "LT0106_02_287_33 | \n", - "LT0106_02/287/33/LT0106_02_287_33.tif | \n", - "ENSG00000186143 | \n", - "... | \n", - "0.116183 | \n", - "0.073442 | \n", - "-0.035741 | \n", - "-0.020786 | \n", - "0.599503 | \n", - "2.253533 | \n", - "-0.473317 | \n", - "0.022974 | \n", - "1.555225 | \n", - "-0.743614 | \n", - "
3417 rows × 1292 columns
\n", - "| \n", - " | Mitocheck_Phenotypic_Class | \n", - "Mitocheck_Object_ID | \n", - "Location_Center_X | \n", - "Location_Center_Y | \n", - "Metadata_Plate | \n", - "Metadata_Well | \n", - "Metadata_Site | \n", - "Metadata_Plate_Map_Name | \n", - "Metadata_DNA | \n", - "Metadata_Gene | \n", - "... | \n", - "efficientnet_1270 | \n", - "efficientnet_1271 | \n", - "efficientnet_1272 | \n", - "efficientnet_1273 | \n", - "efficientnet_1274 | \n", - "efficientnet_1275 | \n", - "efficientnet_1276 | \n", - "efficientnet_1277 | \n", - "efficientnet_1278 | \n", - "efficientnet_1279 | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2542 | \n", - "Apoptosis | \n", - "45.0 | \n", - "264.076923 | \n", - "231.230769 | \n", - "LT0109_38 | \n", - "381_87 | \n", - "1 | \n", - "LT0109_38_381_87 | \n", - "LT0109_38/381/87/LT0109_38_381_87.tif | \n", - "COPB | \n", - "... | \n", - "0.747397 | \n", - "-0.303137 | \n", - "-0.441440 | \n", - "-0.558231 | \n", - "0.559000 | \n", - "2.418906 | \n", - "-0.536620 | \n", - "-0.060039 | \n", - "2.196802 | \n", - "-1.746036 | \n", - "
| 2636 | \n", - "Apoptosis | \n", - "106.0 | \n", - "419.000000 | \n", - "597.937500 | \n", - "LT0089_01 | \n", - "175_93 | \n", - "1 | \n", - "LT0089_01_175_93 | \n", - "LT0089_01/175/93/LT0089_01_175_93.tif | \n", - "ENSG00000159763 | \n", - "... | \n", - "0.394264 | \n", - "-0.389874 | \n", - "-0.183874 | \n", - "0.727683 | \n", - "-0.044377 | \n", - "-1.151310 | \n", - "0.289207 | \n", - "0.378687 | \n", - "0.896932 | \n", - "-1.444912 | \n", - "
| 2637 | \n", - "Apoptosis | \n", - "106.0 | \n", - "404.193548 | \n", - "598.161290 | \n", - "LT0089_01 | \n", - "175_93 | \n", - "1 | \n", - "LT0089_01_175_93 | \n", - "LT0089_01/175/93/LT0089_01_175_93.tif | \n", - "ENSG00000159763 | \n", - "... | \n", - "0.704804 | \n", - "-0.400241 | \n", - "-0.027618 | \n", - "0.955689 | \n", - "-0.165457 | \n", - "-1.231569 | \n", - "0.360471 | \n", - "0.534833 | \n", - "0.882122 | \n", - "-1.371561 | \n", - "
| 2712 | \n", - "Apoptosis | \n", - "34.0 | \n", - "716.863636 | \n", - "232.443182 | \n", - "LT0089_01 | \n", - "175_60 | \n", - "1 | \n", - "LT0089_01_175_60 | \n", - "LT0089_01/175/60/LT0089_01_175_60.tif | \n", - "ENSG00000159763 | \n", - "... | \n", - "1.174191 | \n", - "0.389117 | \n", - "0.551532 | \n", - "-0.899469 | \n", - "0.354533 | \n", - "1.228106 | \n", - "-1.004360 | \n", - "-1.001267 | \n", - "0.346599 | \n", - "-0.136300 | \n", - "
| 2964 | \n", - "Apoptosis | \n", - "145.0 | \n", - "726.048780 | \n", - "698.609756 | \n", - "LT0048_14 | \n", - "335_29 | \n", - "1 | \n", - "LT0048_14_335_29 | \n", - "LT0048_14/335/29/LT0048_14_335_29.tif | \n", - "PLK1 | \n", - "... | \n", - "0.569967 | \n", - "-0.616215 | \n", - "-0.702953 | \n", - "0.140410 | \n", - "0.007790 | \n", - "1.131292 | \n", - "-0.150318 | \n", - "-0.626151 | \n", - "1.383265 | \n", - "-1.793438 | \n", - "
| ... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "
| 687 | \n", - "SmallIrregular | \n", - "170.0 | \n", - "1082.461538 | \n", - "553.169231 | \n", - "LT0030_17 | \n", - "184_39 | \n", - "1 | \n", - "LT0030_17_184_39 | \n", - "LT0030_17/184/39/LT0030_17_184_39.tif | \n", - "RGR | \n", - "... | \n", - "-0.686351 | \n", - "0.323989 | \n", - "0.992241 | \n", - "-1.107960 | \n", - "-0.143038 | \n", - "-0.850287 | \n", - "-3.561455 | \n", - "0.478179 | \n", - "-0.354417 | \n", - "1.720881 | \n", - "
| 701 | \n", - "UndefinedCondensed | \n", - "47.0 | \n", - "1182.202703 | \n", - "109.581081 | \n", - "LT0101_01 | \n", - "277_79 | \n", - "1 | \n", - "LT0101_01_277_79 | \n", - "LT0101_01/277/79/LT0101_01_277_79.tif | \n", - "failed_QC | \n", - "... | \n", - "0.275500 | \n", - "0.067556 | \n", - "0.724037 | \n", - "-0.283421 | \n", - "-0.288346 | \n", - "-0.134525 | \n", - "-0.028859 | \n", - "0.065001 | \n", - "1.887147 | \n", - "-1.169897 | \n", - "
| 3174 | \n", - "UndefinedCondensed | \n", - "75.0 | \n", - "694.145455 | \n", - "270.090909 | \n", - "LT0041_32 | \n", - "132_74 | \n", - "1 | \n", - "LT0041_32_132_74 | \n", - "LT0041_32/132/74/LT0041_32_132_74.tif | \n", - "TRPV1 | \n", - "... | \n", - "0.335572 | \n", - "0.152123 | \n", - "-0.596092 | \n", - "-0.183711 | \n", - "0.108508 | \n", - "1.344167 | \n", - "0.562621 | \n", - "0.056856 | \n", - "0.966724 | \n", - "0.466382 | \n", - "
| 2059 | \n", - "UndefinedCondensed | \n", - "68.0 | \n", - "899.866667 | \n", - "461.683333 | \n", - "LT0027_44 | \n", - "292_65 | \n", - "1 | \n", - "LT0027_44_292_65 | \n", - "LT0027_44/292/65/LT0027_44_292_65.tif | \n", - "CDK4 | \n", - "... | \n", - "0.825360 | \n", - "1.854059 | \n", - "-0.268961 | \n", - "-0.750176 | \n", - "-0.248810 | \n", - "-0.667705 | \n", - "0.825891 | \n", - "0.492001 | \n", - "1.212143 | \n", - "0.265127 | \n", - "
| 598 | \n", - "UndefinedCondensed | \n", - "121.0 | \n", - "1014.135593 | \n", - "424.694915 | \n", - "LT0030_17 | \n", - "184_36 | \n", - "1 | \n", - "LT0030_17_184_36 | \n", - "LT0030_17/184/36/LT0030_17_184_36.tif | \n", - "RGR | \n", - "... | \n", - "-0.824977 | \n", - "0.661097 | \n", - "0.799882 | \n", - "-1.043553 | \n", - "-0.038244 | \n", - "-0.395626 | \n", - "-2.137661 | \n", - "0.426424 | \n", - "-0.758414 | \n", - "1.212763 | \n", - "
605 rows × 1292 columns
\n", - "| \n", - " | Mitocheck_Phenotypic_Class | \n", - "Mitocheck_Object_ID | \n", - "Location_Center_X | \n", - "Location_Center_Y | \n", - "Metadata_Plate | \n", - "Metadata_Well | \n", - "Metadata_Site | \n", - "Metadata_Plate_Map_Name | \n", - "Metadata_DNA | \n", - "Metadata_Gene | \n", - "... | \n", - "efficientnet_1270 | \n", - "efficientnet_1271 | \n", - "efficientnet_1272 | \n", - "efficientnet_1273 | \n", - "efficientnet_1274 | \n", - "efficientnet_1275 | \n", - "efficientnet_1276 | \n", - "efficientnet_1277 | \n", - "efficientnet_1278 | \n", - "efficientnet_1279 | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 544 | \n", - "Large | \n", - "46.0 | \n", - "673.963504 | \n", - "421.518248 | \n", - "LT0042_10 | \n", - "144_36 | \n", - "1 | \n", - "LT0042_10_144_36 | \n", - "LT0042_10/144/36/LT0042_10_144_36.tif | \n", - "POLG | \n", - "... | \n", - "-0.869680 | \n", - "-0.819131 | \n", - "-0.065895 | \n", - "-0.584129 | \n", - "0.440676 | \n", - "1.731456 | \n", - "-0.300726 | \n", - "0.637247 | \n", - "-1.317758 | \n", - "-0.620867 | \n", - "
| 545 | \n", - "Polylobed | \n", - "47.0 | \n", - "239.978723 | \n", - "429.074468 | \n", - "LT0042_10 | \n", - "144_36 | \n", - "1 | \n", - "LT0042_10_144_36 | \n", - "LT0042_10/144/36/LT0042_10_144_36.tif | \n", - "POLG | \n", - "... | \n", - "2.301987 | \n", - "-0.809295 | \n", - "-0.077291 | \n", - "-0.640948 | \n", - "1.342124 | \n", - "-0.829389 | \n", - "-0.514600 | \n", - "-0.681411 | \n", - "-0.130137 | \n", - "-0.984097 | \n", - "
| 546 | \n", - "Polylobed | \n", - "47.0 | \n", - "219.123288 | \n", - "439.972603 | \n", - "LT0042_10 | \n", - "144_36 | \n", - "1 | \n", - "LT0042_10_144_36 | \n", - "LT0042_10/144/36/LT0042_10_144_36.tif | \n", - "POLG | \n", - "... | \n", - "0.648838 | \n", - "-0.948251 | \n", - "-0.230179 | \n", - "-0.920418 | \n", - "1.479645 | \n", - "-0.292760 | \n", - "0.309152 | \n", - "-0.593983 | \n", - "-0.226819 | \n", - "-1.323268 | \n", - "
| 547 | \n", - "Polylobed | \n", - "47.0 | \n", - "238.273973 | \n", - "456.630137 | \n", - "LT0042_10 | \n", - "144_36 | \n", - "1 | \n", - "LT0042_10_144_36 | \n", - "LT0042_10/144/36/LT0042_10_144_36.tif | \n", - "POLG | \n", - "... | \n", - "-0.090531 | \n", - "-0.551376 | \n", - "2.460243 | \n", - "-1.067416 | \n", - "3.303222 | \n", - "-1.247294 | \n", - "1.483531 | \n", - "-0.815428 | \n", - "-1.067548 | \n", - "0.053700 | \n", - "
| 548 | \n", - "Polylobed | \n", - "47.0 | \n", - "213.785714 | \n", - "461.857143 | \n", - "LT0042_10 | \n", - "144_36 | \n", - "1 | \n", - "LT0042_10_144_36 | \n", - "LT0042_10/144/36/LT0042_10_144_36.tif | \n", - "POLG | \n", - "... | \n", - "1.376728 | \n", - "-0.958535 | \n", - "-0.154087 | \n", - "-0.787587 | \n", - "2.873853 | \n", - "-0.237060 | \n", - "0.497598 | \n", - "-0.587101 | \n", - "1.101417 | \n", - "-0.382665 | \n", - "
| ... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "... | \n", - "
| 4076 | \n", - "Folded | \n", - "83.0 | \n", - "24.870370 | \n", - "692.805556 | \n", - "LT0138_03 | \n", - "127_35 | \n", - "1 | \n", - "LT0138_03_127_35 | \n", - "LT0138_03/127/35/LT0138_03_127_35.tif | \n", - "ENSG00000116641 | \n", - "... | \n", - "0.004918 | \n", - "-0.330484 | \n", - "-0.201508 | \n", - "-1.129264 | \n", - "0.376668 | \n", - "-0.047315 | \n", - "0.366433 | \n", - "0.584675 | \n", - "-0.209616 | \n", - "0.290683 | \n", - "
| 4077 | \n", - "Folded | \n", - "84.0 | \n", - "818.500000 | \n", - "691.933333 | \n", - "LT0138_03 | \n", - "127_35 | \n", - "1 | \n", - "LT0138_03_127_35 | \n", - "LT0138_03/127/35/LT0138_03_127_35.tif | \n", - "ENSG00000116641 | \n", - "... | \n", - "0.715451 | \n", - "-0.333479 | \n", - "0.692772 | \n", - "-0.598472 | \n", - "-0.312265 | \n", - "-0.150046 | \n", - "0.276773 | \n", - "-0.298540 | \n", - "-0.106108 | \n", - "-0.438396 | \n", - "
| 4078 | \n", - "Polylobed | \n", - "78.0 | \n", - "617.656250 | \n", - "699.125000 | \n", - "LT0138_03 | \n", - "127_35 | \n", - "1 | \n", - "LT0138_03_127_35 | \n", - "LT0138_03/127/35/LT0138_03_127_35.tif | \n", - "ENSG00000116641 | \n", - "... | \n", - "0.754502 | \n", - "-1.012552 | \n", - "-0.005334 | \n", - "-1.034427 | \n", - "0.010367 | \n", - "-0.101921 | \n", - "-0.433755 | \n", - "-0.010575 | \n", - "0.067495 | \n", - "-0.720715 | \n", - "
| 4079 | \n", - "Folded | \n", - "95.0 | \n", - "707.160377 | \n", - "802.254717 | \n", - "LT0138_03 | \n", - "127_35 | \n", - "1 | \n", - "LT0138_03_127_35 | \n", - "LT0138_03/127/35/LT0138_03_127_35.tif | \n", - "ENSG00000116641 | \n", - "... | \n", - "0.134387 | \n", - "-0.905355 | \n", - "-0.017685 | \n", - "-0.983794 | \n", - "-0.307310 | \n", - "-0.261301 | \n", - "-0.196357 | \n", - "0.948798 | \n", - "0.079491 | \n", - "-1.198162 | \n", - "
| 4080 | \n", - "Folded | \n", - "95.0 | \n", - "706.580000 | \n", - "835.860000 | \n", - "LT0138_03 | \n", - "127_35 | \n", - "1 | \n", - "LT0138_03_127_35 | \n", - "LT0138_03/127/35/LT0138_03_127_35.tif | \n", - "ENSG00000116641 | \n", - "... | \n", - "-0.021910 | \n", - "-0.782816 | \n", - "-0.024221 | \n", - "-0.782257 | \n", - "0.490789 | \n", - "0.382172 | \n", - "-0.134912 | \n", - "0.675714 | \n", - "0.190705 | \n", - "-0.791579 | \n", - "
101 rows × 1292 columns
\n", - "| \n", - " | Apoptosis | \n", - "Artefact | \n", - "Binuclear | \n", - "Elongated | \n", - "Folded | \n", - "Grape | \n", - "Hole | \n", - "Interphase | \n", - "Large | \n", - "Metaphase | \n", - "MetaphaseAlignment | \n", - "Polylobed | \n", - "Prometaphase | \n", - "SmallIrregular | \n", - "UndefinedCondensed | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", - "0.000000 | \n", - "0.000010 | \n", - "0.016720 | \n", - "0.000000 | \n", - "0.044551 | \n", - "1.830712e-07 | \n", - "8.667781e-03 | \n", - "0.030963 | \n", - "0.018660 | \n", - "0.018456 | \n", - "0.035947 | \n", - "0.041343 | \n", - "0.042726 | \n", - "0.109560 | \n", - "0.000000 | \n", - "
| 1 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.054229 | \n", - "0.005597 | \n", - "0.046018 | \n", - "5.784630e-02 | \n", - "3.182227e-02 | \n", - "0.023169 | \n", - "0.007222 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.128353 | \n", - "0.000000 | \n", - "0.035189 | \n", - "0.000000 | \n", - "
| 2 | \n", - "0.012221 | \n", - "0.048949 | \n", - "0.049848 | \n", - "0.003902 | \n", - "0.000000 | \n", - "0.000000e+00 | \n", - "3.472109e-07 | \n", - "0.005979 | \n", - "0.003862 | \n", - "0.000000 | \n", - "0.018771 | \n", - "0.136587 | \n", - "0.021903 | \n", - "0.031674 | \n", - "0.011061 | \n", - "
| 3 | \n", - "0.000000 | \n", - "0.029429 | \n", - "0.089790 | \n", - "0.036783 | \n", - "0.010768 | \n", - "3.443468e-02 | \n", - "3.275226e-02 | \n", - "0.130796 | \n", - "0.008159 | \n", - "0.017026 | \n", - "0.017689 | \n", - "0.027212 | \n", - "0.009773 | \n", - "0.007306 | \n", - "0.000000 | \n", - "
| 4 | \n", - "0.067988 | \n", - "0.082489 | \n", - "0.091606 | \n", - "0.000244 | \n", - "0.005041 | \n", - "1.366581e-04 | \n", - "3.782586e-02 | \n", - "0.007359 | \n", - "0.000000 | \n", - "0.062671 | \n", - "0.014653 | \n", - "0.057120 | \n", - "0.001171 | \n", - "0.053891 | \n", - "0.015763 | \n", - "
| \n", - " | Apoptosis | \n", - "Artefact | \n", - "Binuclear | \n", - "Elongated | \n", - "Folded | \n", - "Grape | \n", - "Hole | \n", - "Interphase | \n", - "Large | \n", - "Metaphase | \n", - "MetaphaseAlignment | \n", - "Polylobed | \n", - "Prometaphase | \n", - "SmallIrregular | \n", - "UndefinedCondensed | \n", - "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", - "0.025959 | \n", - "0.000000 | \n", - "0.073697 | \n", - "0.0 | \n", - "0.0 | \n", - "0.000000 | \n", - "0.063843 | \n", - "0.000000 | \n", - "0.0 | \n", - "0.0 | \n", - "0.009617 | \n", - "0.000000 | \n", - "0.022961 | \n", - "0.000000 | \n", - "0.0 | \n", - "
| 1 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.021166 | \n", - "0.0 | \n", - "0.0 | \n", - "0.021071 | \n", - "0.000000 | \n", - "0.020176 | \n", - "0.0 | \n", - "0.0 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.005165 | \n", - "0.0 | \n", - "
| 2 | \n", - "0.005441 | \n", - "0.000000 | \n", - "0.033513 | \n", - "0.0 | \n", - "0.0 | \n", - "0.028290 | \n", - "0.000000 | \n", - "0.056090 | \n", - "0.0 | \n", - "0.0 | \n", - "0.000000 | \n", - "0.043708 | \n", - "0.000632 | \n", - "0.000000 | \n", - "0.0 | \n", - "
| 3 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.0 | \n", - "0.0 | \n", - "0.017258 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.0 | \n", - "0.0 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.025886 | \n", - "0.000000 | \n", - "0.0 | \n", - "
| 4 | \n", - "0.000000 | \n", - "0.009121 | \n", - "0.000000 | \n", - "0.0 | \n", - "0.0 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.008493 | \n", - "0.0 | \n", - "0.0 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.000000 | \n", - "0.0 | \n", - "
| \n", + " | Mitocheck_Phenotypic_Class | \n", + "Mitocheck_Object_ID | \n", + "Location_Center_X | \n", + "Location_Center_Y | \n", + "Metadata_Plate | \n", + "Metadata_Well | \n", + "Metadata_Frame | \n", + "Metadata_Site | \n", + "Metadata_Plate_Map_Name | \n", + "Metadata_DNA | \n", + "... | \n", + "efficientnet_1270 | \n", + "efficientnet_1271 | \n", + "efficientnet_1272 | \n", + "efficientnet_1273 | \n", + "efficientnet_1274 | \n", + "efficientnet_1275 | \n", + "efficientnet_1276 | \n", + "efficientnet_1277 | \n", + "efficientnet_1278 | \n", + "efficientnet_1279 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "MetaphaseAlignment | \n", + "11 | \n", + "572.214286 | \n", + "58.185714 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.048350 | \n", + "-0.721622 | \n", + "0.749788 | \n", + "-1.377590 | \n", + "0.454974 | \n", + "0.188488 | \n", + "0.141427 | \n", + "-1.553405 | \n", + "2.346107 | \n", + "-1.774278 | \n", + "
| 1 | \n", + "Artefact | \n", + "66 | \n", + "1117.070423 | \n", + "342.732394 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.172767 | \n", + "-0.290257 | \n", + "-0.709041 | \n", + "-1.431541 | \n", + "-0.063308 | \n", + "-0.412793 | \n", + "0.452684 | \n", + "-1.906647 | \n", + "1.962141 | \n", + "-0.223039 | \n", + "
| 2 | \n", + "Artefact | \n", + "66 | \n", + "1116.500000 | \n", + "362.000000 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "1.093582 | \n", + "-0.323180 | \n", + "-0.663069 | \n", + "-1.427502 | \n", + "-0.901764 | \n", + "-0.355080 | \n", + "0.418053 | \n", + "-2.298449 | \n", + "1.098266 | \n", + "-0.069326 | \n", + "
| 3 | \n", + "Artefact | \n", + "66 | \n", + "1106.348485 | \n", + "370.469697 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "0.943948 | \n", + "-0.211267 | \n", + "-0.346355 | \n", + "-1.365543 | \n", + "-0.276932 | \n", + "0.023856 | \n", + "0.376514 | \n", + "-1.700348 | \n", + "1.833686 | \n", + "-0.625385 | \n", + "
| 4 | \n", + "MetaphaseAlignment | \n", + "98 | \n", + "937.692308 | \n", + "521.048077 | \n", + "LT0066_19 | \n", + "287 | \n", + "1 | \n", + "1 | \n", + "LT0066_19_287 | \n", + "LT0066_19/LT0066_19_287_1.tif | \n", + "... | \n", + "0.947300 | \n", + "-0.564136 | \n", + "0.333336 | \n", + "-1.584454 | \n", + "0.891666 | \n", + "1.223252 | \n", + "-0.359166 | \n", + "-0.826366 | \n", + "2.115734 | \n", + "-1.241848 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 4646 | \n", + "SmallIrregular | \n", + "160 | \n", + "1105.826923 | \n", + "536.173077 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.397249 | \n", + "-0.565566 | \n", + "-0.588207 | \n", + "-0.944316 | \n", + "1.137498 | \n", + "-0.536326 | \n", + "-1.618058 | \n", + "0.579486 | \n", + "-1.083401 | \n", + "1.938486 | \n", + "
| 4647 | \n", + "SmallIrregular | \n", + "170 | \n", + "1082.461538 | \n", + "553.169231 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.295010 | \n", + "0.310557 | \n", + "0.524240 | \n", + "-1.558440 | \n", + "-0.013856 | \n", + "-0.466041 | \n", + "-3.544024 | \n", + "0.174894 | \n", + "-0.085268 | \n", + "1.764378 | \n", + "
| 4648 | \n", + "SmallIrregular | \n", + "175 | \n", + "1065.846154 | \n", + "570.123077 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.691697 | \n", + "0.809051 | \n", + "-0.522286 | \n", + "-0.956816 | \n", + "0.112946 | \n", + "-0.087137 | \n", + "-1.078033 | \n", + "0.191389 | \n", + "-0.921300 | \n", + "1.250694 | \n", + "
| 4650 | \n", + "SmallIrregular | \n", + "194 | \n", + "323.269231 | \n", + "622.641026 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "1.127832 | \n", + "0.492408 | \n", + "-0.531921 | \n", + "-0.766331 | \n", + "0.286463 | \n", + "0.493081 | \n", + "0.520599 | \n", + "-0.713538 | \n", + "0.553553 | \n", + "0.480614 | \n", + "
| 4652 | \n", + "SmallIrregular | \n", + "273 | \n", + "348.283784 | \n", + "934.040541 | \n", + "LT0030_17 | \n", + "184 | \n", + "39 | \n", + "1 | \n", + "LT0030_17_184 | \n", + "LT0030_17/LT0030_17_184_39.tif | \n", + "... | \n", + "-0.041231 | \n", + "0.998568 | \n", + "0.006131 | \n", + "-0.857846 | \n", + "1.163148 | \n", + "0.904470 | \n", + "-0.321917 | \n", + "0.480036 | \n", + "0.449932 | \n", + "1.926145 | \n", + "
3398 rows × 1293 columns
\n", + "| \n", + " | Mitocheck_Phenotypic_Class | \n", + "Mitocheck_Object_ID | \n", + "Location_Center_X | \n", + "Location_Center_Y | \n", + "Metadata_Plate | \n", + "Metadata_Well | \n", + "Metadata_Frame | \n", + "Metadata_Site | \n", + "Metadata_Plate_Map_Name | \n", + "Metadata_DNA | \n", + "... | \n", + "efficientnet_1270 | \n", + "efficientnet_1271 | \n", + "efficientnet_1272 | \n", + "efficientnet_1273 | \n", + "efficientnet_1274 | \n", + "efficientnet_1275 | \n", + "efficientnet_1276 | \n", + "efficientnet_1277 | \n", + "efficientnet_1278 | \n", + "efficientnet_1279 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3735 | \n", + "Anaphase | \n", + "296 | \n", + "553.963636 | \n", + "955.818182 | \n", + "LT0043_48 | \n", + "166 | \n", + "36 | \n", + "1 | \n", + "LT0043_48_166 | \n", + "LT0043_48/LT0043_48_166_36.tif | \n", + "... | \n", + "1.462225 | \n", + "-0.616369 | \n", + "-0.531454 | \n", + "-1.440759 | \n", + "-0.084943 | \n", + "1.122296 | \n", + "0.536537 | \n", + "-0.670603 | \n", + "2.340016 | \n", + "-0.063247 | \n", + "
| 1938 | \n", + "Anaphase | \n", + "191 | \n", + "108.709091 | \n", + "810.927273 | \n", + "LT0027_44 | \n", + "292 | \n", + "95 | \n", + "1 | \n", + "LT0027_44_292 | \n", + "LT0027_44/LT0027_44_292_95.tif | \n", + "... | \n", + "0.929248 | \n", + "3.647632 | \n", + "-0.114033 | \n", + "-0.869640 | \n", + "1.028330 | \n", + "2.456478 | \n", + "-1.666183 | \n", + "0.174904 | \n", + "0.183448 | \n", + "1.116518 | \n", + "
| 861 | \n", + "Anaphase | \n", + "95 | \n", + "1067.354839 | \n", + "604.629032 | \n", + "LT0048_14 | \n", + "335 | \n", + "1 | \n", + "1 | \n", + "LT0048_14_335 | \n", + "LT0048_14/LT0048_14_335_1.tif | \n", + "... | \n", + "1.111943 | \n", + "0.418418 | \n", + "-0.964839 | \n", + "-1.614682 | \n", + "5.774443 | \n", + "-0.975210 | \n", + "-1.797358 | \n", + "-1.633382 | \n", + "0.516337 | \n", + "-1.135858 | \n", + "
| 1266 | \n", + "Anaphase | \n", + "32 | \n", + "909.931034 | \n", + "99.413793 | \n", + "LT0098_13 | \n", + "21 | \n", + "77 | \n", + "1 | \n", + "LT0098_13_21 | \n", + "LT0098_13/LT0098_13_21_77.tif | \n", + "... | \n", + "0.401601 | \n", + "1.268759 | \n", + "-0.465424 | \n", + "0.169212 | \n", + "0.117011 | \n", + "2.817199 | \n", + "-0.689718 | \n", + "-0.522147 | \n", + "0.739060 | \n", + "-1.661322 | \n", + "
| 1003 | \n", + "Anaphase | \n", + "103 | \n", + "1101.338983 | \n", + "292.186441 | \n", + "LT0100_03 | \n", + "93 | \n", + "84 | \n", + "1 | \n", + "LT0100_03_93 | \n", + "LT0100_03/LT0100_03_93_84.tif | \n", + "... | \n", + "0.423295 | \n", + "-0.076668 | \n", + "0.132334 | \n", + "-0.510567 | \n", + "-0.349815 | \n", + "0.662900 | \n", + "0.766846 | \n", + "-0.050815 | \n", + "1.494643 | \n", + "0.513932 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 640 | \n", + "SmallIrregular | \n", + "93 | \n", + "979.030769 | \n", + "553.276923 | \n", + "LT0094_01 | \n", + "319 | \n", + "60 | \n", + "1 | \n", + "LT0094_01_319 | \n", + "LT0094_01/LT0094_01_319_60.tif | \n", + "... | \n", + "0.141835 | \n", + "0.496487 | \n", + "-0.754865 | \n", + "-0.662246 | \n", + "0.823577 | \n", + "0.594171 | \n", + "-0.585857 | \n", + "0.273909 | \n", + "0.048165 | \n", + "0.719115 | \n", + "
| 1912 | \n", + "UndefinedCondensed | \n", + "48 | \n", + "621.619565 | \n", + "230.152174 | \n", + "LT0027_44 | \n", + "292 | \n", + "92 | \n", + "1 | \n", + "LT0027_44_292 | \n", + "LT0027_44/LT0027_44_292_92.tif | \n", + "... | \n", + "1.137367 | \n", + "1.936749 | \n", + "1.337562 | \n", + "-0.866048 | \n", + "-0.327555 | \n", + "0.137286 | \n", + "0.744572 | \n", + "-0.552244 | \n", + "1.728855 | \n", + "-0.621845 | \n", + "
| 1244 | \n", + "UndefinedCondensed | \n", + "75 | \n", + "690.226415 | \n", + "280.264151 | \n", + "LT0041_32 | \n", + "132 | \n", + "65 | \n", + "1 | \n", + "LT0041_32_132 | \n", + "LT0041_32/LT0041_32_132_65.tif | \n", + "... | \n", + "1.074309 | \n", + "1.111121 | \n", + "0.266230 | \n", + "-0.587265 | \n", + "0.999843 | \n", + "0.766380 | \n", + "0.460926 | \n", + "-0.107652 | \n", + "1.563349 | \n", + "0.345567 | \n", + "
| 1885 | \n", + "UndefinedCondensed | \n", + "126 | \n", + "698.066667 | \n", + "765.213333 | \n", + "LT0027_44 | \n", + "292 | \n", + "65 | \n", + "1 | \n", + "LT0027_44_292 | \n", + "LT0027_44/LT0027_44_292_65.tif | \n", + "... | \n", + "0.737519 | \n", + "1.469439 | \n", + "1.067551 | \n", + "-0.988590 | \n", + "1.185334 | \n", + "1.174448 | \n", + "-0.712216 | \n", + "-0.740500 | \n", + "1.937956 | \n", + "-2.176477 | \n", + "
| 1873 | \n", + "UndefinedCondensed | \n", + "18 | \n", + "854.272727 | \n", + "93.327273 | \n", + "LT0027_44 | \n", + "292 | \n", + "65 | \n", + "1 | \n", + "LT0027_44_292 | \n", + "LT0027_44/LT0027_44_292_65.tif | \n", + "... | \n", + "0.404778 | \n", + "0.908970 | \n", + "1.159503 | \n", + "-0.874210 | \n", + "1.253875 | \n", + "2.004828 | \n", + "-1.048763 | \n", + "-0.265726 | \n", + "1.903799 | \n", + "-1.792228 | \n", + "
598 rows × 1293 columns
\n", + "| \n", + " | Mitocheck_Phenotypic_Class | \n", + "Mitocheck_Object_ID | \n", + "Location_Center_X | \n", + "Location_Center_Y | \n", + "Metadata_Plate | \n", + "Metadata_Well | \n", + "Metadata_Frame | \n", + "Metadata_Site | \n", + "Metadata_Plate_Map_Name | \n", + "Metadata_DNA | \n", + "... | \n", + "efficientnet_1270 | \n", + "efficientnet_1271 | \n", + "efficientnet_1272 | \n", + "efficientnet_1273 | \n", + "efficientnet_1274 | \n", + "efficientnet_1275 | \n", + "efficientnet_1276 | \n", + "efficientnet_1277 | \n", + "efficientnet_1278 | \n", + "efficientnet_1279 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3291 | \n", + "Prometaphase | \n", + "44 | \n", + "689.846154 | \n", + "395.230769 | \n", + "LT0064_14 | \n", + "3 | \n", + "22 | \n", + "1 | \n", + "LT0064_14_3 | \n", + "LT0064_14/LT0064_14_3_22.tif | \n", + "... | \n", + "0.736642 | \n", + "-0.445215 | \n", + "-0.265348 | \n", + "1.071087 | \n", + "0.218429 | \n", + "1.898012 | \n", + "0.610592 | \n", + "-0.385365 | \n", + "1.464963 | \n", + "-0.312188 | \n", + "
| 3292 | \n", + "Prometaphase | \n", + "84 | \n", + "593.157895 | \n", + "686.333333 | \n", + "LT0064_14 | \n", + "3 | \n", + "22 | \n", + "1 | \n", + "LT0064_14_3 | \n", + "LT0064_14/LT0064_14_3_22.tif | \n", + "... | \n", + "0.995399 | \n", + "0.249642 | \n", + "-0.018367 | \n", + "-1.448828 | \n", + "-0.108095 | \n", + "2.250121 | \n", + "-0.114802 | \n", + "-0.816467 | \n", + "2.097812 | \n", + "-0.739505 | \n", + "
| 3293 | \n", + "Prometaphase | \n", + "85 | \n", + "541.015873 | \n", + "691.968254 | \n", + "LT0064_14 | \n", + "3 | \n", + "22 | \n", + "1 | \n", + "LT0064_14_3 | \n", + "LT0064_14/LT0064_14_3_22.tif | \n", + "... | \n", + "1.308651 | \n", + "0.418540 | \n", + "-0.601356 | \n", + "-1.432083 | \n", + "-0.305420 | \n", + "4.157056 | \n", + "0.277327 | \n", + "-0.861576 | \n", + "0.808444 | \n", + "-0.388083 | \n", + "
| 3294 | \n", + "Prometaphase | \n", + "86 | \n", + "482.838235 | \n", + "697.647059 | \n", + "LT0064_14 | \n", + "3 | \n", + "22 | \n", + "1 | \n", + "LT0064_14_3 | \n", + "LT0064_14/LT0064_14_3_22.tif | \n", + "... | \n", + "1.689349 | \n", + "0.191744 | \n", + "0.316645 | \n", + "-1.242803 | \n", + "1.226191 | \n", + "3.854381 | \n", + "-0.198574 | \n", + "0.205935 | \n", + "1.721441 | \n", + "-1.363270 | \n", + "
| 3295 | \n", + "Prometaphase | \n", + "88 | \n", + "608.475410 | \n", + "720.688525 | \n", + "LT0064_14 | \n", + "3 | \n", + "22 | \n", + "1 | \n", + "LT0064_14_3 | \n", + "LT0064_14/LT0064_14_3_22.tif | \n", + "... | \n", + "0.693373 | \n", + "0.102049 | \n", + "0.672704 | \n", + "-1.385639 | \n", + "-0.001937 | \n", + "1.760955 | \n", + "0.095366 | \n", + "-0.617366 | \n", + "2.316967 | \n", + "-0.068435 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 944 | \n", + "Folded | \n", + "95 | \n", + "706.580000 | \n", + "835.860000 | \n", + "LT0138_03 | \n", + "127 | \n", + "35 | \n", + "1 | \n", + "LT0138_03_127 | \n", + "LT0138_03/LT0138_03_127_35.tif | \n", + "... | \n", + "0.477016 | \n", + "-0.853186 | \n", + "-0.190448 | \n", + "-1.310051 | \n", + "0.905157 | \n", + "1.072310 | \n", + "-0.121663 | \n", + "0.484607 | \n", + "0.499503 | \n", + "-0.828424 | \n", + "
| 2228 | \n", + "SmallIrregular | \n", + "87 | \n", + "1260.900000 | \n", + "333.675000 | \n", + "LT0039_45 | \n", + "136 | \n", + "62 | \n", + "1 | \n", + "LT0039_45_136 | \n", + "LT0039_45/LT0039_45_136_62.tif | \n", + "... | \n", + "0.673718 | \n", + "0.277680 | \n", + "0.095618 | \n", + "0.041264 | \n", + "-0.449543 | \n", + "-1.188860 | \n", + "0.380463 | \n", + "0.079736 | \n", + "0.245942 | \n", + "0.793815 | \n", + "
| 2229 | \n", + "SmallIrregular | \n", + "152 | \n", + "467.472973 | \n", + "598.716216 | \n", + "LT0039_45 | \n", + "136 | \n", + "62 | \n", + "1 | \n", + "LT0039_45_136 | \n", + "LT0039_45/LT0039_45_136_62.tif | \n", + "... | \n", + "0.439038 | \n", + "-0.218860 | \n", + "0.184120 | \n", + "0.124753 | \n", + "-0.716705 | \n", + "-0.394543 | \n", + "-1.442362 | \n", + "0.072097 | \n", + "0.352796 | \n", + "1.657756 | \n", + "
| 2230 | \n", + "SmallIrregular | \n", + "159 | \n", + "499.466667 | \n", + "622.613333 | \n", + "LT0039_45 | \n", + "136 | \n", + "62 | \n", + "1 | \n", + "LT0039_45_136 | \n", + "LT0039_45/LT0039_45_136_62.tif | \n", + "... | \n", + "-1.269705 | \n", + "-0.449638 | \n", + "0.516888 | \n", + "0.145913 | \n", + "-0.175916 | \n", + "-0.139407 | \n", + "-1.648394 | \n", + "-1.174195 | \n", + "-0.724752 | \n", + "1.740923 | \n", + "
| 2231 | \n", + "SmallIrregular | \n", + "112 | \n", + "1176.418919 | \n", + "428.513514 | \n", + "LT0039_45 | \n", + "136 | \n", + "53 | \n", + "1 | \n", + "LT0039_45_136 | \n", + "LT0039_45/LT0039_45_136_53.tif | \n", + "... | \n", + "0.113412 | \n", + "-0.644244 | \n", + "-0.390251 | \n", + "0.530301 | \n", + "-0.452048 | \n", + "-0.907092 | \n", + "0.255916 | \n", + "0.515282 | \n", + "1.245245 | \n", + "0.852617 | \n", + "
478 rows × 1293 columns
\n", + "| \n", + " | Anaphase | \n", + "Apoptosis | \n", + "Artefact | \n", + "Binuclear | \n", + "Elongated | \n", + "Folded | \n", + "Grape | \n", + "Hole | \n", + "Interphase | \n", + "Large | \n", + "Metaphase | \n", + "MetaphaseAlignment | \n", + "Polylobed | \n", + "Prometaphase | \n", + "SmallIrregular | \n", + "UndefinedCondensed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "0.007907 | \n", + "0.000000 | \n", + "0.002906 | \n", + "6.380548e-09 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.005263 | \n", + "7.795729e-03 | \n", + "0.055444 | \n", + "0.028652 | \n", + "0.007294 | \n", + "0.058497 | \n", + "0.055951 | \n", + "1.164984e-02 | \n", + "0.049322 | \n", + "0.008320 | \n", + "
| 1 | \n", + "0.000000 | \n", + "0.012269 | \n", + "0.020812 | \n", + "2.386640e-02 | \n", + "0.013439 | \n", + "0.016868 | \n", + "0.009444 | \n", + "5.394298e-07 | \n", + "0.000000 | \n", + "0.020314 | \n", + "0.000000 | \n", + "0.013486 | \n", + "0.030805 | \n", + "1.976936e-02 | \n", + "0.031717 | \n", + "0.000000 | \n", + "
| 2 | \n", + "0.000000 | \n", + "0.035544 | \n", + "0.031964 | \n", + "5.343236e-06 | \n", + "0.000721 | \n", + "0.000000 | \n", + "0.000000 | \n", + "1.184528e-02 | \n", + "0.026249 | \n", + "0.010501 | \n", + "0.000000 | \n", + "0.010033 | \n", + "0.021676 | \n", + "4.566904e-02 | \n", + "0.062578 | \n", + "0.000000 | \n", + "
| 3 | \n", + "0.000000 | \n", + "0.000920 | \n", + "0.057642 | \n", + "5.459898e-02 | \n", + "0.026499 | \n", + "0.001331 | \n", + "0.018668 | \n", + "2.611519e-02 | \n", + "0.145121 | \n", + "0.000000 | \n", + "0.001165 | \n", + "0.024942 | \n", + "0.077565 | \n", + "1.402689e-02 | \n", + "0.000948 | \n", + "0.003738 | \n", + "
| 4 | \n", + "0.026603 | \n", + "0.000000 | \n", + "0.027513 | \n", + "5.134753e-02 | \n", + "0.003103 | \n", + "0.002732 | \n", + "0.011911 | \n", + "1.870821e-02 | \n", + "0.054121 | \n", + "0.000000 | \n", + "0.019289 | \n", + "0.016082 | \n", + "0.001906 | \n", + "1.538151e-07 | \n", + "0.018743 | \n", + "0.019257 | \n", + "
| \n", + " | Anaphase | \n", + "Apoptosis | \n", + "Artefact | \n", + "Binuclear | \n", + "Elongated | \n", + "Folded | \n", + "Grape | \n", + "Hole | \n", + "Interphase | \n", + "Large | \n", + "Metaphase | \n", + "MetaphaseAlignment | \n", + "Polylobed | \n", + "Prometaphase | \n", + "SmallIrregular | \n", + "UndefinedCondensed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.045757 | \n", + "0.0 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.00000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.015024 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.0 | \n", + "
| 1 | \n", + "0.000000 | \n", + "0.009015 | \n", + "0.000000 | \n", + "0.054333 | \n", + "0.0 | \n", + "0.0 | \n", + "0.061999 | \n", + "0.0 | \n", + "0.016249 | \n", + "0.02557 | \n", + "0.0 | \n", + "0.0 | \n", + "0.007266 | \n", + "0.000000 | \n", + "0.018277 | \n", + "0.0 | \n", + "
| 2 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.014105 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.00000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.020669 | \n", + "0.0 | \n", + "
| 3 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.022540 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.00000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.0 | \n", + "
| 4 | \n", + "0.022886 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.007439 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.00000 | \n", + "0.0 | \n", + "0.0 | \n", + "0.000000 | \n", + "0.013388 | \n", + "0.000000 | \n", + "0.0 | \n", + "