From f0ccd63f323a3cefb25d508fdb12471c17a76cf1 Mon Sep 17 00:00:00 2001 From: Sarah Teichman Date: Wed, 16 Apr 2025 09:52:01 -0700 Subject: [PATCH 1/2] Update test-coverage.yaml update actions checkout and cache to version 3 --- .github/workflows/test-coverage.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index 809c41f..de3e181 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -14,7 +14,7 @@ jobs: env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - uses: r-lib/actions/setup-r@v2 @@ -29,7 +29,7 @@ jobs: shell: Rscript {0} - name: Restore R package cache - uses: actions/cache@v2 + uses: actions/cache@v3 with: path: ${{ env.R_LIBS_USER }} key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} From 15b032f30490861dabc6974c8f98d238a0f7ef9c Mon Sep 17 00:00:00 2001 From: Sarah Teichman Date: Wed, 16 Apr 2025 09:52:41 -0700 Subject: [PATCH 2/2] Update R-CMD-check.yaml remove ubuntu 20.04 because we are no longer checking it in newer packages and it is scheduled for retirement, update actions checkout and cache to version 3 --- .github/workflows/R-CMD-check.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 20c234f..26d6468 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -22,7 +22,7 @@ jobs: config: - {os: windows-latest, r: 'release'} - {os: macOS-latest, r: 'release'} - - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + # - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} # - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} # PAULINE FLAG: Current open issue with r-devel: Bioconductor does not yet build and check packages for R version 4.2 # ISSUE#471: https://github.com/r-hub/rhub/issues/471 @@ -32,7 +32,7 @@ jobs: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - uses: r-lib/actions/setup-r@v2 with: @@ -48,7 +48,7 @@ jobs: shell: Rscript {0} - name: Restore R package cache - uses: actions/cache@v2 + uses: actions/cache@v3 with: path: ${{ env.R_LIBS_USER }} key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}