diff --git a/sdks/go/pkg/beam/runners/prism/internal/handlerunner.go b/sdks/go/pkg/beam/runners/prism/internal/handlerunner.go
index 340eb0b7eb5f..e58bb8f180ed 100644
--- a/sdks/go/pkg/beam/runners/prism/internal/handlerunner.go
+++ b/sdks/go/pkg/beam/runners/prism/internal/handlerunner.go
@@ -32,6 +32,7 @@ import (
 	"github.com/apache/beam/sdks/v2/go/pkg/beam/runners/prism/internal/urns"
 	"github.com/apache/beam/sdks/v2/go/pkg/beam/runners/prism/internal/worker"
 	"google.golang.org/protobuf/encoding/prototext"
+	"google.golang.org/protobuf/proto"
 )
 
 // This file retains the logic for the pardo handler
@@ -107,12 +108,12 @@ func (h *runner) handleFlatten(tid string, t *pipepb.PTransform, comps *pipepb.C
 		// they're written out to the runner in the same fashion.
 		// This may stop being necessary once Flatten Unzipping happens in the optimizer.
 		outPCol := comps.GetPcollections()[outColID]
-		outCoder := comps.GetCoders()[outPCol.GetCoderId()]
-		coderSubs := map[string]*pipepb.Coder{}
+		pcollSubs := map[string]*pipepb.PCollection{}
 		for _, p := range t.GetInputs() {
 			inPCol := comps.GetPcollections()[p]
 			if inPCol.CoderId != outPCol.CoderId {
-				coderSubs[inPCol.CoderId] = outCoder
+				pcollSubs[p] = proto.Clone(inPCol).(*pipepb.PCollection)
+				pcollSubs[p].CoderId = outPCol.CoderId
 			}
 		}
 
@@ -123,7 +124,7 @@ func (h *runner) handleFlatten(tid string, t *pipepb.PTransform, comps *pipepb.C
 				Transforms: map[string]*pipepb.PTransform{
 					tid: t,
 				},
-				Coders: coderSubs,
+				Pcollections: pcollSubs,
 			},
 			RemovedLeaves: nil,
 			ForcedRoots:   forcedRoots,