diff --git a/examples/java/pom.xml b/examples/java/pom.xml
index cac985773bda..55b2ec849b5d 100644
--- a/examples/java/pom.xml
+++ b/examples/java/pom.xml
@@ -56,19 +56,6 @@
         </configuration>
       </plugin>
 
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals><goal>analyze-only</goal></goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-checkstyle-plugin</artifactId>
diff --git a/examples/java8/pom.xml b/examples/java8/pom.xml
index 08b811bc96e1..c5fe38545cd3 100644
--- a/examples/java8/pom.xml
+++ b/examples/java8/pom.xml
@@ -66,20 +66,6 @@
         </configuration>
       </plugin>
 
-
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals><goal>analyze-only</goal></goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-checkstyle-plugin</artifactId>
diff --git a/pom.xml b/pom.xml
index 31beef175ef6..aaca7a11a12b 100644
--- a/pom.xml
+++ b/pom.xml
@@ -860,16 +860,6 @@
           </configuration>
         </plugin>
 
-        <!-- Ignore runtime-only dependencies in analysis -->
-        <plugin>
-          <groupId>org.apache.maven.plugins</groupId>
-          <artifactId>maven-dependency-plugin</artifactId>
-          <version>2.10</version>
-          <configuration>
-            <ignoreNonCompile>true</ignoreNonCompile>
-          </configuration>
-        </plugin>
-
         <plugin>
           <groupId>org.codehaus.mojo</groupId>
           <artifactId>build-helper-maven-plugin</artifactId>
@@ -918,6 +908,21 @@
     </pluginManagement>
 
     <plugins>
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-dependency-plugin</artifactId>
+        <version>2.10</version>
+        <executions>
+          <execution>
+            <goals><goal>analyze-only</goal></goals>
+            <configuration>
+              <!-- Ignore runtime-only dependencies in analysis -->
+              <ignoreNonCompile>true</ignoreNonCompile>
+              <failOnWarning>true</failOnWarning>
+            </configuration>
+          </execution>
+        </executions>
+      </plugin>
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-enforcer-plugin</artifactId>
diff --git a/runners/core-java/pom.xml b/runners/core-java/pom.xml
index 1587a1af36d2..8ee28744cc07 100644
--- a/runners/core-java/pom.xml
+++ b/runners/core-java/pom.xml
@@ -52,19 +52,6 @@
         </configuration>
       </plugin>
 
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals><goal>analyze-only</goal></goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-checkstyle-plugin</artifactId>
diff --git a/runners/direct-java/pom.xml b/runners/direct-java/pom.xml
index 3010757c1846..13e8951c1f0e 100644
--- a/runners/direct-java/pom.xml
+++ b/runners/direct-java/pom.xml
@@ -46,19 +46,6 @@
         <artifactId>maven-compiler-plugin</artifactId>
       </plugin>
 
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals><goal>analyze-only</goal></goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-checkstyle-plugin</artifactId>
diff --git a/runners/flink/examples/pom.xml b/runners/flink/examples/pom.xml
index 1fba81cfec99..b0ee2ed04e68 100644
--- a/runners/flink/examples/pom.xml
+++ b/runners/flink/examples/pom.xml
@@ -96,6 +96,20 @@
         <artifactId>maven-source-plugin</artifactId>
       </plugin>
 
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-dependency-plugin</artifactId>
+        <executions>
+          <execution>
+            <goals><goal>analyze-only</goal></goals>
+            <configuration>
+              <!-- disable for now until dependencies are cleaned up -->
+              <failOnWarning>false</failOnWarning>
+            </configuration>
+          </execution>
+        </executions>
+      </plugin>
+
       <!-- Checkstyle errors for now
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
diff --git a/runners/flink/runner/pom.xml b/runners/flink/runner/pom.xml
index dd32063adfa4..1c522fc1abc6 100644
--- a/runners/flink/runner/pom.xml
+++ b/runners/flink/runner/pom.xml
@@ -152,6 +152,20 @@
         <artifactId>maven-source-plugin</artifactId>
       </plugin>
 
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-dependency-plugin</artifactId>
+        <executions>
+          <execution>
+            <goals><goal>analyze-only</goal></goals>
+            <configuration>
+              <!-- disable for now until dependencies are cleaned up -->
+              <failOnWarning>false</failOnWarning>
+            </configuration>
+          </execution>
+        </executions>
+      </plugin>
+
       <!-- Checkstyle errors for now
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
diff --git a/runners/google-cloud-dataflow-java/pom.xml b/runners/google-cloud-dataflow-java/pom.xml
index 54084622d231..38ffa495b266 100644
--- a/runners/google-cloud-dataflow-java/pom.xml
+++ b/runners/google-cloud-dataflow-java/pom.xml
@@ -93,19 +93,6 @@
         </configuration>
       </plugin>
 
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals><goal>analyze-only</goal></goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <!-- Run CheckStyle pass on transforms, as they are release in
            source form. -->
       <plugin>
diff --git a/runners/spark/pom.xml b/runners/spark/pom.xml
index 741f2db63c41..94c42bd663f6 100644
--- a/runners/spark/pom.xml
+++ b/runners/spark/pom.xml
@@ -35,6 +35,8 @@
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
     <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
     <spark.version>1.6.1</spark.version>
+    <hadoop.version>2.2.0</hadoop.version>
+    <kafka.version>0.8.2.1</kafka.version>
   </properties>
 
   <profiles>
@@ -112,10 +114,34 @@
       <version>${spark.version}</version>
       <scope>provided</scope>
     </dependency>
+    <dependency>
+      <groupId>org.apache.spark</groupId>
+      <artifactId>spark-network-common_2.10</artifactId>
+      <version>${spark.version}</version>
+      <scope>provided</scope>
+    </dependency>
     <dependency>
       <groupId>org.apache.kafka</groupId>
       <artifactId>kafka_2.10</artifactId>
-      <version>0.8.2.1</version>
+      <version>${kafka.version}</version>
+      <scope>provided</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.kafka</groupId>
+      <artifactId>kafka-clients</artifactId>
+      <version>${kafka.version}</version>
+      <scope>provided</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.hadoop</groupId>
+      <artifactId>hadoop-common</artifactId>
+      <version>${hadoop.version}</version>
+      <scope>provided</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.hadoop</groupId>
+      <artifactId>hadoop-mapreduce-client-core</artifactId>
+      <version>${hadoop.version}</version>
       <scope>provided</scope>
     </dependency>
     <dependency>
@@ -127,11 +153,68 @@
       <artifactId>auto-service</artifactId>
       <optional>true</optional>
     </dependency>
+    <dependency>
+      <groupId>com.google.http-client</groupId>
+      <artifactId>google-http-client</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>com.fasterxml.jackson.core</groupId>
+      <artifactId>jackson-core</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>com.fasterxml.jackson.core</groupId>
+      <artifactId>jackson-annotations</artifactId>
+    </dependency>
+      <dependency>
+      <groupId>com.fasterxml.jackson.core</groupId>
+      <artifactId>jackson-databind</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.avro</groupId>
+      <artifactId>avro</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>org.slf4j</groupId>
+      <artifactId>slf4j-api</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>joda-time</groupId>
+      <artifactId>joda-time</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>commons-io</groupId>
+      <artifactId>commons-io</artifactId>
+      <version>2.4</version>
+      <scope>provided</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.zookeeper</groupId>
+      <artifactId>zookeeper</artifactId>
+      <version>3.4.6</version>
+      <scope>provided</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.scala-lang</groupId>
+      <artifactId>scala-library</artifactId>
+      <version>2.10.5</version>
+      <scope>provided</scope>
+    </dependency>
     <dependency>
       <groupId>org.apache.beam</groupId>
       <artifactId>beam-sdks-java-core</artifactId>
       <exclusions>
-        <!-- Use Hadoop/Spark's backend logger -->
+        <!-- Use Hadoop/Spark's backend logger instead of jdk14 for tests -->
+        <exclusion>
+          <groupId>org.slf4j</groupId>
+          <artifactId>slf4j-jdk14</artifactId>
+        </exclusion>
+      </exclusions>
+    </dependency>
+    <dependency>
+      <groupId>org.apache.beam</groupId>
+      <artifactId>beam-runners-core-java</artifactId>
+      <exclusions>
+        <!-- Use Hadoop/Spark's backend logger instead of jdk14 for tests -->
         <exclusion>
           <groupId>org.slf4j</groupId>
           <artifactId>slf4j-jdk14</artifactId>
@@ -142,7 +225,7 @@
       <groupId>org.apache.beam</groupId>
       <artifactId>beam-examples-java</artifactId>
       <exclusions>
-        <!-- Use Hadoop/Spark's backend logger -->
+        <!-- Use Hadoop/Spark's backend logger instead of jdk14 for tests -->
         <exclusion>
           <groupId>org.slf4j</groupId>
           <artifactId>slf4j-jdk14</artifactId>
diff --git a/sdks/java/core/pom.xml b/sdks/java/core/pom.xml
index bbba77b29c0a..3b650c6da3e8 100644
--- a/sdks/java/core/pom.xml
+++ b/sdks/java/core/pom.xml
@@ -135,21 +135,6 @@
         </configuration>
       </plugin>
 
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals>
-              <goal>analyze-only</goal>
-            </goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-checkstyle-plugin</artifactId>
diff --git a/sdks/java/io/google-cloud-platform/pom.xml b/sdks/java/io/google-cloud-platform/pom.xml
index f567261af3c7..5786e842d10a 100644
--- a/sdks/java/io/google-cloud-platform/pom.xml
+++ b/sdks/java/io/google-cloud-platform/pom.xml
@@ -79,7 +79,27 @@
       <version>${bigtable.version}</version>
     </dependency>
 
-    <!-- test -->
+    <dependency>
+      <groupId>org.slf4j</groupId>
+      <artifactId>slf4j-api</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.guava</groupId>
+      <artifactId>guava</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.protobuf</groupId>
+      <artifactId>protobuf-java</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.code.findbugs</groupId>
+      <artifactId>jsr305</artifactId>
+    </dependency>
+
+    <!--  test -->
     <dependency>
       <groupId>org.apache.beam</groupId>
       <artifactId>beam-sdks-java-core</artifactId>
diff --git a/sdks/java/io/hdfs/pom.xml b/sdks/java/io/hdfs/pom.xml
index 9c307922e2e5..9f4b38ac4741 100644
--- a/sdks/java/io/hdfs/pom.xml
+++ b/sdks/java/io/hdfs/pom.xml
@@ -57,6 +57,21 @@
       <artifactId>beam-sdks-java-core</artifactId>
     </dependency>
 
+    <dependency>
+      <groupId>com.fasterxml.jackson.core</groupId>
+      <artifactId>jackson-annotations</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.guava</groupId>
+      <artifactId>guava</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.code.findbugs</groupId>
+      <artifactId>jsr305</artifactId>
+    </dependency>
+
     <dependency>
       <groupId>org.apache.hadoop</groupId>
       <artifactId>hadoop-client</artifactId>
@@ -64,6 +79,20 @@
       <scope>provided</scope>
     </dependency>
 
+    <dependency>
+      <groupId>org.apache.hadoop</groupId>
+      <artifactId>hadoop-common</artifactId>
+      <version>2.7.0</version>
+      <scope>provided</scope>
+    </dependency>
+
+    <dependency>
+      <groupId>org.apache.hadoop</groupId>
+      <artifactId>hadoop-mapreduce-client-core</artifactId>
+      <version>2.7.0</version>
+      <scope>provided</scope>
+    </dependency>
+
     <!-- test dependencies -->
     <dependency>
       <groupId>org.apache.beam</groupId>
diff --git a/sdks/java/io/kafka/pom.xml b/sdks/java/io/kafka/pom.xml
index 76c0eb6f470c..578026b52867 100644
--- a/sdks/java/io/kafka/pom.xml
+++ b/sdks/java/io/kafka/pom.xml
@@ -69,6 +69,31 @@
       <version>0.9.0.1</version>
     </dependency>
 
+    <dependency>
+      <groupId>org.slf4j</groupId>
+      <artifactId>slf4j-api</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>joda-time</groupId>
+      <artifactId>joda-time</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.fasterxml.jackson.core</groupId>
+      <artifactId>jackson-annotations</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.guava</groupId>
+      <artifactId>guava</artifactId>
+    </dependency>
+
+    <dependency>
+      <groupId>com.google.code.findbugs</groupId>
+      <artifactId>jsr305</artifactId>
+    </dependency>
+
     <!-- test dependencies-->
     <dependency>
       <groupId>org.apache.beam</groupId>
diff --git a/sdks/java/java8tests/pom.xml b/sdks/java/java8tests/pom.xml
index 8e20228a0b8e..775a7c7b1b60 100644
--- a/sdks/java/java8tests/pom.xml
+++ b/sdks/java/java8tests/pom.xml
@@ -51,19 +51,6 @@
         <artifactId>maven-compiler-plugin</artifactId>
       </plugin>
 
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-dependency-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals><goal>analyze-only</goal></goals>
-            <configuration>
-              <failOnWarning>true</failOnWarning>
-            </configuration>
-          </execution>
-        </executions>
-      </plugin>
-
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>
         <artifactId>maven-checkstyle-plugin</artifactId>