diff --git a/dev/diffs/3.5.8.diff b/dev/diffs/3.5.8.diff
index d538d1161d..72c41e4f82 100644
--- a/dev/diffs/3.5.8.diff
+++ b/dev/diffs/3.5.8.diff
@@ -2065,79 +2065,6 @@ index 07e2849ce6f..3e73645b638 100644
      val extraOptions = Map[String, String](
        ParquetOutputFormat.WRITER_VERSION -> ParquetProperties.WriterVersion.PARQUET_2_0.toString
      )
-diff --git a/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFieldIdIOSuite.scala b/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFieldIdIOSuite.scala
-index 5e01d3f447c..284d6657d4f 100644
---- a/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFieldIdIOSuite.scala
-+++ b/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFieldIdIOSuite.scala
-@@ -20,7 +20,7 @@ package org.apache.spark.sql.execution.datasources.parquet
- import scala.collection.JavaConverters._
- 
- import org.apache.spark.SparkException
--import org.apache.spark.sql.{QueryTest, Row}
-+import org.apache.spark.sql.{IgnoreCometNativeDataFusion, QueryTest, Row}
- import org.apache.spark.sql.internal.SQLConf
- import org.apache.spark.sql.test.SharedSparkSession
- import org.apache.spark.sql.types.{ArrayType, IntegerType, MapType, Metadata, MetadataBuilder, StringType, StructType}
-@@ -30,7 +30,8 @@ class ParquetFieldIdIOSuite extends QueryTest with ParquetTest with SharedSparkS
-   private def withId(id: Int): Metadata =
-     new MetadataBuilder().putLong(ParquetUtils.FIELD_ID_METADATA_KEY, id).build()
- 
--  test("Parquet reads infer fields using field ids correctly") {
-+  test("Parquet reads infer fields using field ids correctly",
-+    IgnoreCometNativeDataFusion("https://github.com/apache/datafusion-comet/issues/3316")) {
-     withTempDir { dir =>
-       val readSchema =
-         new StructType()
-@@ -78,7 +79,8 @@ class ParquetFieldIdIOSuite extends QueryTest with ParquetTest with SharedSparkS
-     }
-   }
- 
--  test("absence of field ids") {
-+  test("absence of field ids",
-+    IgnoreCometNativeDataFusion("https://github.com/apache/datafusion-comet/issues/3316")) {
-     withTempDir { dir =>
-       val readSchema =
-         new StructType()
-@@ -107,7 +109,8 @@ class ParquetFieldIdIOSuite extends QueryTest with ParquetTest with SharedSparkS
-     }
-   }
- 
--  test("SPARK-38094: absence of field ids: reading nested schema") {
-+  test("SPARK-38094: absence of field ids: reading nested schema",
-+    IgnoreCometNativeDataFusion("https://github.com/apache/datafusion-comet/issues/3316")) {
-     withTempDir { dir =>
-       // now with nested schema/complex type
-       val readSchema =
-@@ -136,7 +139,8 @@ class ParquetFieldIdIOSuite extends QueryTest with ParquetTest with SharedSparkS
-     }
-   }
- 
--  test("multiple id matches") {
-+  test("multiple id matches",
-+    IgnoreCometNativeDataFusion("https://github.com/apache/datafusion-comet/issues/3316")) {
-     withTempDir { dir =>
-       val readSchema =
-         new StructType()
-@@ -163,7 +167,8 @@ class ParquetFieldIdIOSuite extends QueryTest with ParquetTest with SharedSparkS
-     }
-   }
- 
--  test("read parquet file without ids") {
-+  test("read parquet file without ids",
-+    IgnoreCometNativeDataFusion("https://github.com/apache/datafusion-comet/issues/3316")) {
-     withTempDir { dir =>
-       val readSchema =
-         new StructType()
-@@ -196,7 +201,8 @@ class ParquetFieldIdIOSuite extends QueryTest with ParquetTest with SharedSparkS
-     }
-   }
- 
--  test("global read/write flag should work correctly") {
-+  test("global read/write flag should work correctly",
-+    IgnoreCometNativeDataFusion("https://github.com/apache/datafusion-comet/issues/3316")) {
-     withTempDir { dir =>
-       val readSchema =
-         new StructType()
 diff --git a/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFilterSuite.scala b/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFilterSuite.scala
 index 8e88049f51e..49f2001dc6b 100644
 --- a/sql/core/src/test/scala/org/apache/spark/sql/execution/datasources/parquet/ParquetFilterSuite.scala
diff --git a/spark/src/main/scala/org/apache/comet/rules/CometScanRule.scala b/spark/src/main/scala/org/apache/comet/rules/CometScanRule.scala
index 4be2fe5011..29555a61ef 100644
--- a/spark/src/main/scala/org/apache/comet/rules/CometScanRule.scala
+++ b/spark/src/main/scala/org/apache/comet/rules/CometScanRule.scala
@@ -35,6 +35,7 @@ import org.apache.spark.sql.catalyst.util.ResolveDefaultColumns.getExistenceDefa
 import org.apache.spark.sql.comet.{CometBatchScanExec, CometScanExec}
 import org.apache.spark.sql.execution.{FileSourceScanExec, SparkPlan}
 import org.apache.spark.sql.execution.datasources.HadoopFsRelation
+import org.apache.spark.sql.execution.datasources.parquet.ParquetUtils
 import org.apache.spark.sql.execution.datasources.v2.BatchScanExec
 import org.apache.spark.sql.execution.datasources.v2.csv.CSVScan
 import org.apache.spark.sql.execution.datasources.v2.parquet.ParquetScan
@@ -201,6 +202,11 @@ case class CometScanRule(session: SparkSession) extends Rule[SparkPlan] with Com
       withInfo(scanExec, "Native DataFusion scan does not support row index generation")
       return None
     }
+    if (session.sessionState.conf.getConf(SQLConf.PARQUET_FIELD_ID_READ_ENABLED) &&
+      ParquetUtils.hasFieldIds(scanExec.requiredSchema)) {
+      withInfo(scanExec, "Native DataFusion scan does not support Parquet field ID matching")
+      return None
+    }
     if (!isSchemaSupported(scanExec, SCAN_NATIVE_DATAFUSION, r)) {
       return None
     }