diff --git a/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProject.java b/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProject.java
index a0e2b83cc1b39a..0531c6e54aca77 100644
--- a/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProject.java
+++ b/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProject.java
@@ -68,6 +68,8 @@ public List<Rule> buildRules() {
                                     .forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
                             bottomJoin.getOtherJoinConjuncts()
                                     .forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
+                            bottomJoin.getMarkJoinConjuncts()
+                                    .forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
                             Plan newBottomJoin = topJoin.withChildrenNoContext(a, c, null);
                             Plan left = CBOUtils.newProject(topUsedExprIds, newBottomJoin);
                             Plan right = CBOUtils.newProjectIfNeeded(topUsedExprIds, b);
@@ -100,6 +102,8 @@ public List<Rule> buildRules() {
                                     .forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
                             bottomJoin.getOtherJoinConjuncts()
                                     .forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
+                            bottomJoin.getMarkJoinConjuncts()
+                                    .forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
                             Plan newBottomJoin = topJoin.withChildrenNoContext(a, b, null);
                             Plan left = CBOUtils.newProject(topUsedExprIds, newBottomJoin);
                             Plan right = CBOUtils.newProjectIfNeeded(topUsedExprIds, c);
diff --git a/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProject.java b/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProject.java
index b4a5b177f8c0a9..359d6e13552c18 100644
--- a/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProject.java
+++ b/fe/fe-core/src/main/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProject.java
@@ -104,6 +104,7 @@ public Rule build() {
                     topProject.getProjects().forEach(expr -> topUsedExprIds.addAll(expr.getInputSlotExprIds()));
                     bottomSemi.getHashJoinConjuncts().forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
                     bottomSemi.getOtherJoinConjuncts().forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
+                    bottomSemi.getMarkJoinConjuncts().forEach(e -> topUsedExprIds.addAll(e.getInputSlotExprIds()));
 
                     Plan left = CBOUtils.newProject(topUsedExprIds, newBottomSemi);
                     Plan right = CBOUtils.newProjectIfNeeded(topUsedExprIds, b);
diff --git a/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProjectTest.java b/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProjectTest.java
index 27e162f4af79f1..70f6de6c320ac0 100644
--- a/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProjectTest.java
+++ b/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/LogicalJoinSemiJoinTransposeProjectTest.java
@@ -105,4 +105,28 @@ public void generateTopProject() {
                         )
                 );
     }
+
+    @Test
+    public void generateTopProjectMarkJoin() {
+        LogicalPlan topJoin1 = new LogicalPlanBuilder(scan1)
+                .markJoinWithMarkConjuncts(scan2, JoinType.LEFT_SEMI_JOIN, Pair.of(0, 0)) // t1.id = t2.id
+                .project(ImmutableList.of(1))
+                .join(scan3, JoinType.INNER_JOIN, Pair.of(0, 0)) // t1.id = t3.id
+                .project(ImmutableList.of(0))
+                .build();
+
+        PlanChecker.from(MemoTestUtils.createConnectContext(), topJoin1)
+                .applyExploration(LogicalJoinSemiJoinTransposeProject.INSTANCE.buildRules())
+                .matchesExploration(
+                        logicalProject(
+                                leftSemiLogicalJoin(
+                                        logicalProject(innerLogicalJoin(
+                                                logicalOlapScan().when(scan -> scan.getTable().getName().equals("t1")),
+                                                logicalOlapScan().when(scan -> scan.getTable().getName().equals("t3"))
+                                        )),
+                                        logicalProject(logicalOlapScan().when(scan -> scan.getTable().getName().equals("t2")))
+                                )
+                        )
+                );
+    }
 }
diff --git a/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProjectTest.java b/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProjectTest.java
index dd654a2f42839d..d37be0a1a13fe5 100644
--- a/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProjectTest.java
+++ b/fe/fe-core/src/test/java/org/apache/doris/nereids/rules/exploration/join/SemiJoinSemiJoinTransposeProjectTest.java
@@ -74,10 +74,10 @@ public void testSemiProjectSemiCommute() {
     @Test
     public void testSemiProjectSemiCommuteMarkJoin() {
         LogicalPlan topJoin = new LogicalPlanBuilder(scan1)
-                .markJoin(scan2, JoinType.LEFT_SEMI_JOIN, Pair.of(0, 0))
+                .markJoinWithMarkConjuncts(scan2, JoinType.LEFT_SEMI_JOIN, Pair.of(0, 0))
                 .project(ImmutableList.of(0, 2))
-                .markJoin(scan3, JoinType.LEFT_SEMI_JOIN, Pair.of(0, 1))
-                .projectAll()
+                .markJoinWithMarkConjuncts(scan3, JoinType.LEFT_SEMI_JOIN, Pair.of(0, 1))
+                .project(ImmutableList.of(1, 2))
                 .build();
         PlanChecker.from(MemoTestUtils.createConnectContext(), topJoin)
                 .applyExploration(SemiJoinSemiJoinTransposeProject.INSTANCE.build())
diff --git a/fe/fe-core/src/test/java/org/apache/doris/nereids/util/LogicalPlanBuilder.java b/fe/fe-core/src/test/java/org/apache/doris/nereids/util/LogicalPlanBuilder.java
index ba81fa7e4a39cf..ccdcd253279571 100644
--- a/fe/fe-core/src/test/java/org/apache/doris/nereids/util/LogicalPlanBuilder.java
+++ b/fe/fe-core/src/test/java/org/apache/doris/nereids/util/LogicalPlanBuilder.java
@@ -120,6 +120,17 @@ public LogicalPlanBuilder markJoin(LogicalPlan right, JoinType joinType, Pair<In
         return from(join);
     }
 
+    public LogicalPlanBuilder markJoinWithMarkConjuncts(LogicalPlan right, JoinType joinType, Pair<Integer, Integer> hashOnSlots) {
+        ImmutableList<EqualTo> markConjuncts = ImmutableList.of(
+                new EqualTo(this.plan.getOutput().get(hashOnSlots.first), right.getOutput().get(hashOnSlots.second)));
+
+        LogicalJoin<LogicalPlan, LogicalPlan> join = new LogicalJoin<>(joinType, Collections.emptyList(),
+                Collections.emptyList(), new ArrayList<>(markConjuncts),
+                new DistributeHint(DistributeType.NONE), Optional.of(new MarkJoinSlotReference("fake")),
+                this.plan, right, null);
+        return from(join);
+    }
+
     public LogicalPlanBuilder join(LogicalPlan right, JoinType joinType, Pair<Integer, Integer> hashOnSlots) {
         ImmutableList<EqualTo> hashConjuncts = ImmutableList.of(
                 new EqualTo(this.plan.getOutput().get(hashOnSlots.first), right.getOutput().get(hashOnSlots.second)));