Tools to go from a DICOM dataset into a collection of tables for the purposes of data repurposing and exploration using relational databases.
This is not a general purpose tool. Initial goal is to support exploration of the TCIA QIN-HEADNECK dataset.
Software:
- python
- pandas
- pydicom (must be installed from source! distribution available via pip is too old and does not have some of the DICOM dictionary entries we parse)
Data:
python tabulate.py schema.qdbd <location of a directory with QIN-HEADNECK data>
The script will create tables stored in CSV in the directory where it was executed.
- Andrey Fedorov https://fedorov.github.io