diff --git a/examples/HiddenMarkovModels/ExtendedModelConfiguration/.bonsai/Bonsai.config b/examples/HiddenMarkovModels/ExtendedModelConfiguration/.bonsai/Bonsai.config
index 44c0693..a735886 100644
--- a/examples/HiddenMarkovModels/ExtendedModelConfiguration/.bonsai/Bonsai.config
+++ b/examples/HiddenMarkovModels/ExtendedModelConfiguration/.bonsai/Bonsai.config
@@ -7,7 +7,7 @@
-
+
@@ -41,7 +41,7 @@
-
+
@@ -54,7 +54,7 @@
-
+
diff --git a/examples/HiddenMarkovModels/ExtendedModelConfiguration/LoadModelConfig.bonsai b/examples/HiddenMarkovModels/ExtendedModelConfiguration/LoadModelConfig.bonsai
index 71e43ce..4acb6ea 100644
--- a/examples/HiddenMarkovModels/ExtendedModelConfiguration/LoadModelConfig.bonsai
+++ b/examples/HiddenMarkovModels/ExtendedModelConfiguration/LoadModelConfig.bonsai
@@ -4,7 +4,7 @@
xmlns:py="clr-namespace:Bonsai.Scripting.Python;assembly=Bonsai.Scripting.Python"
xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core"
xmlns:io="clr-namespace:Bonsai.IO;assembly=Bonsai.System"
- xmlns:p1="clr-namespace:Bonsai.ML.HiddenMarkovModels;assembly=Bonsai.ML.HiddenMarkovModels"
+ xmlns:p1="clr-namespace:Bonsai.ML.Hmm.Python;assembly=Bonsai.ML.Hmm.Python"
xmlns="https://bonsai-rx.org/2018/workflow">
@@ -14,7 +14,7 @@
-
+
@@ -49,7 +49,7 @@
-
+
hmm
2
2
diff --git a/examples/HiddenMarkovModels/ExtendedModelConfiguration/SaveModelConfig.bonsai b/examples/HiddenMarkovModels/ExtendedModelConfiguration/SaveModelConfig.bonsai
index 526fbb1..8465aeb 100644
--- a/examples/HiddenMarkovModels/ExtendedModelConfiguration/SaveModelConfig.bonsai
+++ b/examples/HiddenMarkovModels/ExtendedModelConfiguration/SaveModelConfig.bonsai
@@ -2,9 +2,9 @@
@@ -16,7 +16,7 @@
-
+
@@ -64,7 +64,7 @@
-
+
hmm
2
2
diff --git a/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/.bonsai/Bonsai.config b/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/.bonsai/Bonsai.config
index 9dbd6bf..c3a352c 100644
--- a/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/.bonsai/Bonsai.config
+++ b/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/.bonsai/Bonsai.config
@@ -11,10 +11,10 @@
-
-
-
-
+
+
+
+
@@ -61,10 +61,10 @@
-
-
-
-
+
+
+
+
@@ -83,10 +83,10 @@
-
-
-
-
+
+
+
+
diff --git a/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/InferringBehavioralState.bonsai b/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/InferringBehavioralState.bonsai
index 1ec5ecd..ec90f17 100644
--- a/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/InferringBehavioralState.bonsai
+++ b/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/InferringBehavioralState.bonsai
@@ -19,8 +19,8 @@
-
-
+
+
MouseTracking
@@ -307,7 +307,7 @@
-
+
Centroid
@@ -325,7 +325,7 @@
-
+
KFmodel
60
668.08917236328125
@@ -342,7 +342,7 @@
KFParameters
-
+
hmm
6
2
@@ -359,7 +359,7 @@
Centroid
-
+
KFmodel
@@ -434,7 +434,7 @@
1
-
+
hmm
@@ -464,7 +464,7 @@
HMMObservation
-
+
1000
hmm
50
@@ -473,7 +473,7 @@
true
true
-
+
hmm
PT1S
diff --git a/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/README.md b/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/README.md
index c843c1c..7e87739 100644
--- a/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/README.md
+++ b/examples/HiddenMarkovModels/InferringBehavioralStateFromKinematics/README.md
@@ -27,7 +27,7 @@ If you used the bootstrapping method, you don't have to worry about the package
* Bonsai - Numerics v0.9.0
> [!WARNING]
-> This example builds on the [LDS Kinematics Foraging Mouse example](../../LinearDynamicalSystems/Kinematics/ForagingMouse/README.md) and requires both the *Bonsai.ML.LinearDynamicalSystems* package and the *Bonsai.ML.HiddenMarkovModels* package. See the installation guide to ensure both packages are installed and working correctly.
+> This example builds on the [LDS Kinematics Foraging Mouse example](../../LinearDynamicalSystems/Kinematics/ForagingMouse/README.md) and requires both the *Bonsai.ML.Lds.Python* package and the *Bonsai.ML.Hmm.Python* package. See the installation guide to ensure both packages are installed and working correctly.
### Workflow
diff --git a/examples/HiddenMarkovModels/SimulatedData/.bonsai/Bonsai.config b/examples/HiddenMarkovModels/SimulatedData/.bonsai/Bonsai.config
index ee3ff2a..1d14a7b 100644
--- a/examples/HiddenMarkovModels/SimulatedData/.bonsai/Bonsai.config
+++ b/examples/HiddenMarkovModels/SimulatedData/.bonsai/Bonsai.config
@@ -12,9 +12,9 @@
-
-
-
+
+
+
@@ -63,9 +63,9 @@
-
-
-
+
+
+
@@ -86,9 +86,9 @@
-
-
-
+
+
+
diff --git a/examples/HiddenMarkovModels/SimulatedData/SimulatedData.bonsai b/examples/HiddenMarkovModels/SimulatedData/SimulatedData.bonsai
index 9f483e5..462206f 100644
--- a/examples/HiddenMarkovModels/SimulatedData/SimulatedData.bonsai
+++ b/examples/HiddenMarkovModels/SimulatedData/SimulatedData.bonsai
@@ -18,11 +18,11 @@
-
+
-
+
hmm
2
2
@@ -292,7 +292,7 @@
Observation
-
+
80
hmm
50
@@ -301,7 +301,7 @@
true
true
-
+
hmm
PT1S
@@ -317,7 +317,7 @@
Observation
-
+
hmm
diff --git a/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/.bonsai/Bonsai.config
index db732e2..1e820a4 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/.bonsai/Bonsai.config
@@ -11,8 +11,8 @@
-
-
+
+
@@ -65,8 +65,8 @@
-
-
+
+
@@ -88,8 +88,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/ForagingMouse.bonsai b/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/ForagingMouse.bonsai
index 2d1c46f..22e26b0 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/ForagingMouse.bonsai
+++ b/examples/LinearDynamicalSystems/Kinematics/ForagingMouse/ForagingMouse.bonsai
@@ -309,11 +309,11 @@
RuntimeEngine
-
+
Centroid
-
+
Observation
@@ -358,7 +358,7 @@
-
+
model
50
640.20025634765625
@@ -384,7 +384,7 @@
-
+
model
diff --git a/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/.bonsai/Bonsai.config
index e7c50d3..0eb5c9c 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/.bonsai/Bonsai.config
@@ -11,8 +11,8 @@
-
-
+
+
@@ -61,8 +61,8 @@
-
-
+
+
@@ -82,8 +82,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/ForecastingForagingMouse.bonsai b/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/ForecastingForagingMouse.bonsai
index ea26b98..fa0e755 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/ForecastingForagingMouse.bonsai
+++ b/examples/LinearDynamicalSystems/Kinematics/ForecastingForagingMouse/ForecastingForagingMouse.bonsai
@@ -307,11 +307,11 @@
RuntimeEngine
-
+
Centroid
-
+
Observation
@@ -356,7 +356,7 @@
-
+
model
50
640.20025634765625
@@ -382,13 +382,13 @@
-
+
model
InferredKinematics
-
+
model
30
diff --git a/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/.bonsai/Bonsai.config
index 3e51b05..378d520 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/.bonsai/Bonsai.config
@@ -11,8 +11,8 @@
-
-
+
+
@@ -64,8 +64,8 @@
-
-
+
+
@@ -87,8 +87,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/ModelOptimizationForagingMouse.bonsai b/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/ModelOptimizationForagingMouse.bonsai
index 6b505f4..cdcdf3b 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/ModelOptimizationForagingMouse.bonsai
+++ b/examples/LinearDynamicalSystems/Kinematics/ModelOptimizationForagingMouse/ModelOptimizationForagingMouse.bonsai
@@ -309,11 +309,11 @@
RuntimeEngine
-
+
Centroid
-
+
Observation
@@ -358,7 +358,7 @@
-
+
model
50
640.20025634765625
@@ -384,7 +384,7 @@
-
+
200
model
true
@@ -403,7 +403,7 @@
-
+
model
diff --git a/examples/LinearDynamicalSystems/Kinematics/SimulatedData/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/Kinematics/SimulatedData/.bonsai/Bonsai.config
index 6251c80..9623a4d 100644
--- a/examples/LinearDynamicalSystems/Kinematics/SimulatedData/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/Kinematics/SimulatedData/.bonsai/Bonsai.config
@@ -11,8 +11,8 @@
-
-
+
+
@@ -66,8 +66,8 @@
-
-
+
+
@@ -90,8 +90,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/Kinematics/SimulatedData/Simulation.bonsai b/examples/LinearDynamicalSystems/Kinematics/SimulatedData/Simulation.bonsai
index 7437c8f..02d5312 100644
--- a/examples/LinearDynamicalSystems/Kinematics/SimulatedData/Simulation.bonsai
+++ b/examples/LinearDynamicalSystems/Kinematics/SimulatedData/Simulation.bonsai
@@ -33,7 +33,7 @@
RuntimeEngine
-
+
Fps
@@ -217,7 +217,7 @@
-
+
Observation
@@ -243,7 +243,7 @@
-
+
model
20
391.51131518877759
@@ -269,7 +269,7 @@
-
+
model
diff --git a/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/.bonsai/Bonsai.config
index db732e2..1e820a4 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/.bonsai/Bonsai.config
@@ -11,8 +11,8 @@
-
-
+
+
@@ -65,8 +65,8 @@
-
-
+
+
@@ -88,8 +88,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/ZebrafishTracking.bonsai b/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/ZebrafishTracking.bonsai
index 02041d5..fe6632b 100644
--- a/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/ZebrafishTracking.bonsai
+++ b/examples/LinearDynamicalSystems/Kinematics/ZebrafishCentroidTracking/ZebrafishTracking.bonsai
@@ -91,11 +91,11 @@
RuntimeEngine
-
+
Centroid
-
+
Observation
@@ -140,7 +140,7 @@
-
+
model
200
86.041664123535156
@@ -166,7 +166,7 @@
-
+
model
diff --git a/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/.bonsai/Bonsai.config
index 67d7be6..9367173 100644
--- a/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/.bonsai/Bonsai.config
@@ -10,8 +10,8 @@
-
-
+
+
@@ -55,8 +55,8 @@
-
-
+
+
@@ -73,8 +73,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/ReceptiveFieldSimpleCell.bonsai b/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/ReceptiveFieldSimpleCell.bonsai
index 99408d6..7ef83c6 100644
--- a/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/ReceptiveFieldSimpleCell.bonsai
+++ b/examples/LinearDynamicalSystems/LinearRegression/ReceptiveFieldSimpleCell/ReceptiveFieldSimpleCell.bonsai
@@ -4,7 +4,7 @@
xmlns:py="clr-namespace:Bonsai.Scripting.Python;assembly=Bonsai.Scripting.Python"
xmlns:io="clr-namespace:Bonsai.IO;assembly=Bonsai.System"
xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core"
- xmlns:p1="clr-namespace:Bonsai.ML.LinearDynamicalSystems;assembly=Bonsai.ML.LinearDynamicalSystems"
+ xmlns:p1="clr-namespace:Bonsai.ML.Lds.Python;assembly=Bonsai.ML.Lds.Python"
xmlns="https://bonsai-rx.org/2018/workflow">
@@ -14,7 +14,7 @@
-
+
LoadData
@@ -63,7 +63,7 @@
-
+
25
2
145
@@ -81,7 +81,7 @@
-
+
model
diff --git a/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/.bonsai/Bonsai.config b/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/.bonsai/Bonsai.config
index f65445c..69d9e22 100644
--- a/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/.bonsai/Bonsai.config
+++ b/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/.bonsai/Bonsai.config
@@ -10,8 +10,8 @@
-
-
+
+
@@ -59,8 +59,8 @@
-
-
+
+
@@ -80,8 +80,8 @@
-
-
+
+
diff --git a/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/Simulation.bonsai b/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/Simulation.bonsai
index e2e7863..7786219 100644
--- a/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/Simulation.bonsai
+++ b/examples/LinearDynamicalSystems/LinearRegression/SimulatedData/Simulation.bonsai
@@ -15,7 +15,7 @@
-
+
SyntheticDataset
@@ -237,7 +237,7 @@
-
+
25
2
2
@@ -255,10 +255,10 @@
-
+
model
-
+
model
-1
1