From ed210d52e4fc319c3ffd7f8a783798e1cbf53d06 Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 29 Jul 2025 15:34:07 -0600 Subject: [PATCH 1/2] add preprint doi metadata --- CITATION.cff | 3 +++ readme.md | 3 ++- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index a0bdc48c..1bfcb73f 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -38,6 +38,9 @@ identifiers: - description: Software DOI type: doi value: "10.5281/zenodo.14888111" + - description: Preprint DOI + type: doi + value: "10.1101/2025.06.19.660613" abstract: >- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools. keywords: diff --git a/readme.md b/readme.md index 301bb68d..e7b4c914 100644 --- a/readme.md +++ b/readme.md @@ -5,7 +5,8 @@ ![PyPI - Version](https://img.shields.io/pypi/v/cytotable) [![Build Status](https://github.com/cytomining/cytotable/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/cytomining/cytotable/actions/workflows/test.yml?query=branch%3Amain) [![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/) -[![Software DOI badge](https://zenodo.org/badge/DOI/10.5281/zenodo.14888111.svg)](https://doi.org/10.5281/zenodo.14888111) +[![Preprint DOI badge](https://img.shields.io/badge/Preprint_DOI-10.1101/2025.06.19.660613-blue)](https://doi.org/10.1101/2025.06.19.660613) +[![Software DOI badge](https://img.shields.io/badge/Software_DOI-10.5281/zenodo.14888111-blue)](https://doi.org/10.5281/zenodo.14888111) ![dataflow](https://raw.githubusercontent.com/cytomining/cytotable/main/docs/source/_static/dataflow.svg?raw=true) _Diagram showing data flow relative to this project._ From 01ad3a54ed145ec40cebd9796d52e31cce6e3d95 Mon Sep 17 00:00:00 2001 From: d33bs Date: Tue, 29 Jul 2025 15:36:56 -0600 Subject: [PATCH 2/2] Update .pre-commit-config.yaml --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b905561e..f68a02fe 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -77,7 +77,7 @@ repos: hooks: - id: validate-cff - repo: https://github.com/software-gardening/almanack - rev: v0.1.5 + rev: v0.1.6 hooks: - id: almanack-check - repo: https://github.com/PyCQA/pylint