From 06abd5a848f2bdd978ee3859a8751810bfb104b5 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 12 Aug 2025 02:53:52 +0000 Subject: [PATCH 1/2] Bump the python-packages group with 3 updates Bumps the python-packages group with 3 updates: [parsl](https://github.com/Parsl/parsl), [pycytominer](https://github.com/cytomining/pycytominer) and [botocore](https://github.com/boto/botocore). Updates `parsl` from 2025.7.28 to 2025.8.4 - [Commits](https://github.com/Parsl/parsl/compare/2025.07.28...2025.08.04) Updates `pycytominer` from 1.2.3 to 1.2.4 - [Release notes](https://github.com/cytomining/pycytominer/releases) - [Changelog](https://github.com/cytomining/pycytominer/blob/main/CHANGELOG.md) - [Commits](https://github.com/cytomining/pycytominer/compare/v1.2.3...v1.2.4) Updates `botocore` from 1.40.2 to 1.40.7 - [Commits](https://github.com/boto/botocore/compare/1.40.2...1.40.7) --- updated-dependencies: - dependency-name: parsl dependency-version: 2025.8.4 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: pycytominer dependency-version: 1.2.4 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: botocore dependency-version: 1.40.7 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-packages ... Signed-off-by: dependabot[bot] --- poetry.lock | 23 +++++++++++++---------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/poetry.lock b/poetry.lock index dbec402a..890245f8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -449,14 +449,14 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.40.2" +version = "1.40.7" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.9" groups = ["main", "dev"] files = [ - {file = "botocore-1.40.2-py3-none-any.whl", hash = "sha256:a31e6269af05498f8dc1c7f2b3f34448a0f16c79a8601c0389ecddab51b2c2ab"}, - {file = "botocore-1.40.2.tar.gz", hash = "sha256:77c4710bf37b28e897833b5b1f47d6a83e45a29985cd01a560dfdb8b6ad524e5"}, + {file = "botocore-1.40.7-py3-none-any.whl", hash = "sha256:a06956f3d7222e80ef6ae193608f358c3b7898e1a2b88553479d8f9737fbb03e"}, + {file = "botocore-1.40.7.tar.gz", hash = "sha256:33793696680cf3a0c4b5ace4f9070c67c4d4fcb19c999fd85cfee55de3dcf913"}, ] [package.dependencies] @@ -2901,14 +2901,14 @@ files = [ [[package]] name = "parsl" -version = "2025.7.28" +version = "2025.8.4" description = "Simple data dependent workflows in Python" optional = false python-versions = ">=3.9.0" groups = ["main"] files = [ - {file = "parsl-2025.7.28-py3-none-any.whl", hash = "sha256:0936c5dd6d594ede87989382488b1349e9d04e6b5a523ed59b6416240fd2f2c4"}, - {file = "parsl-2025.7.28.tar.gz", hash = "sha256:3547669d6460f8a57d8a586c74e78320646bd55c8b8def34a3a5c27f9e433164"}, + {file = "parsl-2025.8.4-py3-none-any.whl", hash = "sha256:9ad10972f3e94362d4e55548bb527dfcba973545476064dce8be970271849545"}, + {file = "parsl-2025.8.4.tar.gz", hash = "sha256:ee72ac4090ba600718530a24d3af4eb9218256301cb6a137d3079f0294b91eea"}, ] [package.dependencies] @@ -3223,14 +3223,14 @@ markers = {main = "implementation_name == \"pypy\" or platform_python_implementa [[package]] name = "pycytominer" -version = "1.2.3" +version = "1.2.4" description = "Python package for processing image-based profiling data" optional = false python-versions = "<3.14,>=3.9" groups = ["dev"] files = [ - {file = "pycytominer-1.2.3-py3-none-any.whl", hash = "sha256:e972284fa4340eb9854eeaad00f723889de8d1767f8390f191d9172a2827f6a2"}, - {file = "pycytominer-1.2.3.tar.gz", hash = "sha256:ea71a7897d69a83bd71db19b5de9c1a06792c56f9e9267b36776f34d4907f26f"}, + {file = "pycytominer-1.2.4-py3-none-any.whl", hash = "sha256:3f676948e9176abc4d4d954d474a9086c482e9961b7fc1a9acd4fc5770accf78"}, + {file = "pycytominer-1.2.4.tar.gz", hash = "sha256:744a63f1148f8e897b7563e47d3daabb7ff5ecb9b75b47099d2787f136942597"}, ] [package.dependencies] @@ -3238,7 +3238,10 @@ numpy = ">=1.16.5" pandas = ">=1.2.0" pyarrow = ">=8.0.0" scikit-learn = ">=0.21.2" -scipy = ">=1.5" +scipy = [ + {version = ">=1.5", markers = "python_version < \"3.13\""}, + {version = ">1.13.1", markers = "python_full_version > \"3.12.0\""}, +] sqlalchemy = ">=1.3.6,<3" [package.extras] From 83e0434249754f85a53339b50b9283edfe5d9599 Mon Sep 17 00:00:00 2001 From: d33bs Date: Mon, 11 Aug 2025 21:22:05 -0600 Subject: [PATCH 2/2] Update .pre-commit-config.yaml --- .pre-commit-config.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 858e8f10..f68621b9 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -4,7 +4,7 @@ default_language_version: python: python3.10 repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 + rev: v6.0.0 hooks: - id: trailing-whitespace - id: end-of-file-fixer @@ -77,11 +77,11 @@ repos: hooks: - id: validate-cff - repo: https://github.com/software-gardening/almanack - rev: v0.1.6 + rev: v0.1.7 hooks: - id: almanack-check - repo: https://github.com/PyCQA/pylint - rev: v3.3.7 + rev: v3.3.8 hooks: - id: pylint name: pylint