From e8b4b47ecc403b6bd5b4509e4f988d3a96bde302 Mon Sep 17 00:00:00 2001
From: nikosbosse <nikosbosse@gmail.com>
Date: Sun, 6 Nov 2022 14:24:54 +0100
Subject: [PATCH 1/4] Update test snapshots

---
 R/plot.R                                      |   4 +-
 .../plot-avail-forecasts.svg                  | 168 ++++++------
 .../plot_correlation/plot-correlation.svg     |  56 ++--
 .../_snaps/plot_heatmap/plot-heatmap.svg      | 168 ++++++------
 .../plot-interval-coverage.svg                |   2 +-
 .../plot-pairwise-comparison-pval.svg         |  50 ++--
 .../plot-pairwise-comparison-sib.svg          |  50 ++--
 .../plot-pairwise-comparison.svg              |  50 ++--
 .../plot-pairwise-together-sib.svg            |  44 ++--
 .../plot-pairwise-together.svg                |  44 ++--
 .../_snaps/plot_pit/plot-pit-integer.svg      |  72 +++---
 .../_snaps/plot_pit/plot-pit-quantile.svg     |  64 ++---
 .../_snaps/plot_pit/plot-pit-sample.svg       |  18 +-
 .../many-quantiles-from-sample.svg            | 192 ++------------
 .../plot_predictions/many-quantiles.svg       | 240 ++++--------------
 .../_snaps/plot_predictions/no-median.svg     | 176 ++-----------
 .../plot_predictions/point-forecasts.svg      | 144 -----------
 .../plot-quantile-coverage.svg                |   2 +-
 .../plot_score_table/plot-score-table.svg     |  56 ++--
 .../_snaps/plot_wis/plot-wis-flip.svg         |  48 ++--
 .../_snaps/plot_wis/plot-wis-no-relative.svg  |  48 ++--
 tests/testthat/_snaps/plot_wis/plot-wis.svg   |  48 ++--
 22 files changed, 584 insertions(+), 1160 deletions(-)

diff --git a/R/plot.R b/R/plot.R
index 52e2d39f8..aa7240261 100644
--- a/R/plot.R
+++ b/R/plot.R
@@ -1054,7 +1054,7 @@ plot_pit <- function(pit,
         data = pit,
         aes(x = pit_value)
       ) +
-        geom_histogram(aes(y = stat(width*density)),
+        geom_histogram(aes(y = after_stat(width * density)),
           breaks = plot_quantiles,
           colour = "grey"
         ) +
@@ -1066,7 +1066,7 @@ plot_pit <- function(pit,
       data = data.frame(x = pit),
       aes(x = x)
     ) +
-      geom_histogram(aes(y = stat(width*density)),
+      geom_histogram(aes(y = after_stat(width * density)),
         breaks = plot_quantiles,
         colour = "grey"
       )
diff --git a/tests/testthat/_snaps/plot_avail_forecasts/plot-avail-forecasts.svg b/tests/testthat/_snaps/plot_avail_forecasts/plot-avail-forecasts.svg
index 85c01faca..e70c93f14 100644
--- a/tests/testthat/_snaps/plot_avail_forecasts/plot-avail-forecasts.svg
+++ b/tests/testthat/_snaps/plot_avail_forecasts/plot-avail-forecasts.svg
@@ -25,42 +25,42 @@
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index 0901fb9ef..f56619980 100644
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index 93a46adbc..987072ca4 100644
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 <text x='366.87' y='559.43' style='font-size: 8.80px; font-family: sans;' textLength='55.28px' lengthAdjust='spacingAndGlyphs'>overprediction</text>
 <text x='450.39' y='559.43' style='font-size: 8.80px; font-family: sans;' textLength='60.67px' lengthAdjust='spacingAndGlyphs'>underprediction</text>
 <text x='539.29' y='559.43' style='font-size: 8.80px; font-family: sans;' textLength='40.12px' lengthAdjust='spacingAndGlyphs'>dispersion</text>
diff --git a/tests/testthat/_snaps/plot_wis/plot-wis.svg b/tests/testthat/_snaps/plot_wis/plot-wis.svg
index 13dcf0634..5328b4779 100644
--- a/tests/testthat/_snaps/plot_wis/plot-wis.svg
+++ b/tests/testthat/_snaps/plot_wis/plot-wis.svg
@@ -25,15 +25,15 @@
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@@ -43,18 +43,18 @@
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+<rect x='435.89' y='389.29' width='152.16' height='99.96' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #2297E6;' />
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@@ -111,9 +111,9 @@
 <text x='419.89' y='529.04' text-anchor='middle' style='font-size: 11.00px; font-family: sans;' textLength='86.21px' lengthAdjust='spacingAndGlyphs'>WIS contributions</text>
 <text transform='translate(13.05,272.67) rotate(-90)' text-anchor='middle' style='font-size: 11.00px; font-family: sans;' textLength='29.96px' lengthAdjust='spacingAndGlyphs'>model</text>
 <text x='260.36' y='560.19' style='font-size: 11.00px; font-family: sans;' textLength='78.27px' lengthAdjust='spacingAndGlyphs'>WIS component</text>
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+<rect x='517.24' y='548.47' width='15.86' height='15.86' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #2297E6;' />
 <text x='366.87' y='559.43' style='font-size: 8.80px; font-family: sans;' textLength='55.28px' lengthAdjust='spacingAndGlyphs'>overprediction</text>
 <text x='450.39' y='559.43' style='font-size: 8.80px; font-family: sans;' textLength='60.67px' lengthAdjust='spacingAndGlyphs'>underprediction</text>
 <text x='539.29' y='559.43' style='font-size: 8.80px; font-family: sans;' textLength='40.12px' lengthAdjust='spacingAndGlyphs'>dispersion</text>

From d4ce20e9855fd021db410e9c12833f6e55669012 Mon Sep 17 00:00:00 2001
From: nikosbosse <nikosbosse@gmail.com>
Date: Sun, 6 Nov 2022 14:41:42 +0100
Subject: [PATCH 2/4] switch from size to linewidth in geom_line

---
 R/plot.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/plot.R b/R/plot.R
index aa7240261..e417a37cb 100644
--- a/R/plot.R
+++ b/R/plot.R
@@ -260,7 +260,7 @@ plot_ranges <- function(scores,
     geom_point(size = 2) +
     geom_line(aes(group = range),
       colour = "black",
-      size = 0.01
+      linewidth = 0.01
     ) +
     scale_color_continuous(low = "steelblue", high = "salmon") +
     theme_scoringutils() +

From 84a305bc34876abbc7dea29b0d9fc4ef92edf28e Mon Sep 17 00:00:00 2001
From: nikosbosse <nikosbosse@gmail.com>
Date: Thu, 17 Nov 2022 10:45:57 -0600
Subject: [PATCH 3/4] update description to require newest ggplot version

---
 DESCRIPTION | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index cdaf1340e..c5fe0d8f6 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -47,8 +47,8 @@ Encoding: UTF-8
 LazyData: true
 Imports: 
     data.table,
-    ggdist (>= 3.1.0),
-    ggplot2,
+    ggdist (>= 3.2.0),
+    ggplot2 (>= 3.4.0),
     methods,
     rlang,
     scoringRules,
@@ -64,7 +64,7 @@ Config/Needs/website:
     r-lib/pkgdown,
     amirmasoudabdol/preferably
 Config/testthat/edition: 3
-RoxygenNote: 7.2.0
+RoxygenNote: 7.2.1
 URL: https://epiforecasts.io/scoringutils/, https://github.com/epiforecasts/scoringutils
 BugReports: https://github.com/epiforecasts/scoringutils/issues
 VignetteBuilder: knitr

From b7f896a9aa6c5023e4b87ed50298e710e958f651 Mon Sep 17 00:00:00 2001
From: nikosbosse <nikosbosse@gmail.com>
Date: Thu, 17 Nov 2022 11:22:33 -0600
Subject: [PATCH 4/4] add after_stat to package imports

---
 NAMESPACE | 1 +
 R/plot.R  | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/NAMESPACE b/NAMESPACE
index da92c314b..0604e2725 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -63,6 +63,7 @@ importFrom(ggdist,geom_lineribbon)
 importFrom(ggplot2,.data)
 importFrom(ggplot2,`%+replace%`)
 importFrom(ggplot2,aes)
+importFrom(ggplot2,after_stat)
 importFrom(ggplot2,coord_cartesian)
 importFrom(ggplot2,coord_flip)
 importFrom(ggplot2,element_blank)
diff --git a/R/plot.R b/R/plot.R
index e417a37cb..3bbdcd57a 100644
--- a/R/plot.R
+++ b/R/plot.R
@@ -993,7 +993,7 @@ plot_pairwise_comparison <- function(comparison_result,
 #' # sample-based pit
 #' pit <- pit(example_integer, by = c("model"))
 #' plot_pit(pit)
-#' @importFrom ggplot2 ggplot aes xlab ylab geom_histogram stat theme_light
+#' @importFrom ggplot2 ggplot aes xlab ylab geom_histogram stat theme_light after_stat
 #' @export
 
 plot_pit <- function(pit,