A tool to align from FASTQs directly.#730
Merged
tmooney merged 3 commits intogenome:masterfrom Jul 16, 2019
Merged
Conversation
apaul7
reviewed
Jul 16, 2019
This is similar to align_and_tag.cwl but without the SamToFastq pipe.
tmooney
force-pushed
the
fastq_alignment_tool
branch
from
15944de to
65a7f69
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This is similar to the existing
align_and_tag.cwlbut without theSamToFastqpipe. It's the first step to #717.