diff --git a/javascript/extractor/src/com/semmle/js/extractor/AutoBuild.java b/javascript/extractor/src/com/semmle/js/extractor/AutoBuild.java
index 42b969f191ee..71bb515ec54c 100644
--- a/javascript/extractor/src/com/semmle/js/extractor/AutoBuild.java
+++ b/javascript/extractor/src/com/semmle/js/extractor/AutoBuild.java
@@ -16,8 +16,10 @@
 import java.nio.file.attribute.BasicFileAttributes;
 import java.util.ArrayList;
 import java.util.Arrays;
+import java.util.LinkedHashMap;
 import java.util.LinkedHashSet;
 import java.util.List;
+import java.util.Map;
 import java.util.Set;
 import java.util.concurrent.ExecutorService;
 import java.util.concurrent.Executors;
@@ -58,6 +60,25 @@
  * </ul>
  *
  * <p>
+ * Additionally, the following environment variables may be set to customise extraction
+ * (explained in more detail below):
+ * </p>
+ *
+ * <ul>
+ * <li><code>LGTM_INDEX_INCLUDE</code>: a newline-separated list of paths to include</li>
+ * <li><code>LGTM_INDEX_EXCLUDE</code>: a newline-separated list of paths to exclude</li>
+ * <li><code>LGTM_REPOSITORY_FOLDERS_CSV</code>: the path of a CSV file containing file classifications</li>
+ * <li><code>LGTM_INDEX_FILTERS</code>: a newline-separated list of {@link ProjectLayout}-style
+ * patterns that can be used to refine the list of files to include and exclude</li>
+ * <li><code>LGTM_INDEX_TYPESCRIPT</code>: whether to extract TypeScript</li>
+ * <li><code>LGTM_INDEX_FILETYPES</code>: a newline-separated list of ".extension:filetype" pairs
+ * specifying which {@link FileType} to use for the given extension</li>
+ * <li><code>LGTM_INDEX_THREADS</code>: the maximum number of files to extract in parallel</li>
+ * <li><code>LGTM_TRAP_CACHE</code>: the path of a directory to use for trap caching</li>
+ * <li><code>LGTM_TRAP_CACHE_BOUND</code>: the size to bound the trap cache to</li>
+ </ul>
+ *
+ * <p>
  * It extracts the following:
  * </p>
  *
@@ -143,6 +164,12 @@
  * </p>
  *
  * <p>
+ * The environment variable <code>LGTM_INDEX_FILETYPES</code> may be set to a newline-separated
+ * list of file type specifications of the form <code>.extension:filetype</code>, causing all
+ * files whose name ends in <code>.extension</code> to also be included by default.
+ * </p>
+ *
+ * <p>
  * The default exclusion patterns cause the following files to be excluded:
  * </p>
  * <ul>
@@ -157,6 +184,11 @@
  * </p>
  *
  * <p>
+ * The file type as which a file is extracted can be customised via the <code>LGTM_INDEX_FILETYPES</code>
+ * environment variable explained above.
+ * </p>
+ *
+ * <p>
  * Note that all these customisations only apply to <code>LGTM_SRC</code>. Extraction of
  * externs is not customisable.
  * </p>
@@ -176,6 +208,7 @@
 public class AutoBuild {
 	private final ExtractorOutputConfig outputConfig;
 	private final ITrapCache trapCache;
+	private final Map<String, FileType> fileTypes = new LinkedHashMap<>();
 	private final Set<Path> includes = new LinkedHashSet<>();
 	private final Set<Path> excludes = new LinkedHashSet<>();
 	private ProjectLayout filters;
@@ -191,6 +224,7 @@ public AutoBuild() {
 		this.trapCache = mkTrapCache();
 		this.typeScriptMode = getEnumFromEnvVar("LGTM_INDEX_TYPESCRIPT", TypeScriptMode.class, TypeScriptMode.BASIC);
 		this.defaultEncoding = getEnvVar("LGTM_INDEX_DEFAULT_ENCODING");
+		setupFileTypes();
 		setupMatchers();
 	}
 
@@ -260,6 +294,25 @@ private ITrapCache mkTrapCache() {
 		return trapCache;
 	}
 
+	private void setupFileTypes() {
+		for (String spec : Main.NEWLINE.split(getEnvVar("LGTM_INDEX_FILETYPES", ""))) {
+			spec = spec.trim();
+			if (spec.isEmpty())
+				continue;
+			String[] fields = spec.split(":");
+			if (fields.length != 2)
+				continue;
+			String extension = fields[0].trim();
+			String fileType = fields[1].trim();
+			try {
+				fileTypes.put(extension, FileType.valueOf(StringUtil.uc(fileType)));
+			} catch (IllegalArgumentException e) {
+				Exceptions.ignore(e, "We construct a better error message.");
+				throw new UserError("Invalid file type '" + fileType + "'.");
+			}
+		}
+	}
+
 	/**
 	 * Set up include and exclude matchers based on environment variables.
 	 */
@@ -333,6 +386,10 @@ private void setupFilters() {
 		patterns.add("**/.eslintrc*");
 		patterns.add("**/package.json");
 
+		// include any explicitly specified extensions
+		for (String extension : fileTypes.keySet())
+			patterns.add("**/*" + extension);
+
 		// exclude files whose name strongly suggests they are minified
 		patterns.add("-**/*.min.js");
 		patterns.add("-**/*-min.js");
@@ -466,28 +523,48 @@ public FileVisitResult visitFile(Path file, BasicFileAttributes attrs) throws IO
 	 * Extract all supported candidate files that pass the filters.
 	 */
 	private void extractSource() throws IOException {
-		ExtractorConfig config = new ExtractorConfig(true);
-		config = config.withSourceType(getSourceType());
-		config = config.withTypeScriptMode(typeScriptMode);
-		if (defaultEncoding != null)
-			config = config.withDefaultEncoding(defaultEncoding);
-		FileExtractor extractor = new FileExtractor(config, outputConfig, trapCache);
+		// default extractor
+		FileExtractor defaultExtractor = new FileExtractor(mkExtractorConfig(), outputConfig, trapCache);
+
+		// custom extractor for explicitly specified file types
+		Map<String, FileExtractor> customExtractors = new LinkedHashMap<>();
+		for (Map.Entry<String, FileType> spec : fileTypes.entrySet()) {
+			String extension = spec.getKey();
+			String fileType = spec.getValue().name();
+			ExtractorConfig extractorConfig = mkExtractorConfig().withFileType(fileType);
+			customExtractors.put(extension, new FileExtractor(extractorConfig, outputConfig, trapCache));
+		}
 
 		Set<Path> filesToExtract = new LinkedHashSet<>();
 		List<Path> tsconfigFiles = new ArrayList<>();
-		findFilesToExtract(extractor, filesToExtract, tsconfigFiles);
+		findFilesToExtract(defaultExtractor, filesToExtract, tsconfigFiles);
 
 		// extract TypeScript projects and files
-		Set<Path> extractedFiles = extractTypeScript(extractor, filesToExtract, tsconfigFiles);
+		Set<Path> extractedFiles = extractTypeScript(defaultExtractor, filesToExtract, tsconfigFiles);
 
 		// extract remaining files
 		for (Path f : filesToExtract) {
 			if (extractedFiles.add(f)) {
+				FileExtractor extractor = defaultExtractor;
+				if (!fileTypes.isEmpty()) {
+					String extension = FileUtil.extension(f);
+					if (customExtractors.containsKey(extension))
+						extractor = customExtractors.get(extension);
+				}
 				extract(extractor, f, null);
 			}
 		}
 	}
 
+	private ExtractorConfig mkExtractorConfig() {
+		ExtractorConfig config = new ExtractorConfig(true);
+		config = config.withSourceType(getSourceType());
+		config = config.withTypeScriptMode(typeScriptMode);
+		if (defaultEncoding != null)
+			config = config.withDefaultEncoding(defaultEncoding);
+		return config;
+	}
+
 	private Set<Path> extractTypeScript(FileExtractor extractor, Set<Path> files, List<Path> tsconfig) {
 		Set<Path> extractedFiles = new LinkedHashSet<>();
 
@@ -574,7 +651,11 @@ public FileVisitResult visitFile(Path file, BasicFileAttributes attrs) throws IO
 					return FileVisitResult.SKIP_SUBTREE;
 
 				// extract files that are supported and pass the include/exclude patterns
-				if (extractor.supports(file.toFile()) && isFileIncluded(file)) {
+				boolean supported = extractor.supports(file.toFile());
+				if (!supported && !fileTypes.isEmpty()) {
+					supported = fileTypes.containsKey(FileUtil.extension(file));
+				}
+				if (supported && isFileIncluded(file)) {
 					filesToExtract.add(normalizePath(file));
 				}
 
diff --git a/javascript/extractor/src/com/semmle/js/extractor/test/AutoBuildTests.java b/javascript/extractor/src/com/semmle/js/extractor/test/AutoBuildTests.java
index c2c156ee003c..77b3e5119604 100644
--- a/javascript/extractor/src/com/semmle/js/extractor/test/AutoBuildTests.java
+++ b/javascript/extractor/src/com/semmle/js/extractor/test/AutoBuildTests.java
@@ -23,6 +23,7 @@
 import com.semmle.js.extractor.AutoBuild;
 import com.semmle.js.extractor.ExtractorState;
 import com.semmle.js.extractor.FileExtractor;
+import com.semmle.js.extractor.FileExtractor.FileType;
 import com.semmle.util.data.StringUtil;
 import com.semmle.util.exception.UserError;
 import com.semmle.util.files.FileUtil8;
@@ -74,15 +75,31 @@ public void teardown() throws IOException {
 	/**
 	 * Add a file under {@code root} that we either do or don't expect to be extracted,
 	 * depending on the value of {@code extracted}. If the file is expected to be
-	 * extracted, its path is added to {@link #expected}.
+	 * extracted, its path is added to {@link #expected}. If non-null, parameter
+	 * {@code fileType} indicates the file type with which we expect the file to be extracted.
+	 */
+	private Path addFile(boolean extracted, FileType fileType, Path root, String... components) throws IOException {
+		Path f = addFile(root, components);
+		if (extracted) {
+			expected.add(f + (fileType == null ? "" : ":" + fileType.toString()));
+		}
+		return f;
+	}
+
+	/**
+	 * Add a file with default file type; see {@link #addFile(boolean, FileType, Path, String...)}.
 	 */
 	private Path addFile(boolean extracted, Path root, String... components) throws IOException {
+		return addFile(extracted, null, root, components);
+	}
+
+	/**
+	 * Create a file at the specified path under {@code root} and return it.
+	 */
+	private Path addFile(Path root, String... components) throws IOException {
 		Path p = Paths.get(root.toString(), components);
 		Files.createDirectories(p.getParent());
-		Path f = Files.createFile(p);
-		if (extracted)
-			expected.add(f.toString());
-		return f;
+		return Files.createFile(p);
 	}
 
 	/**
@@ -96,7 +113,10 @@ private void runTest() throws IOException {
 			new AutoBuild() {
 				@Override
 				protected void extract(FileExtractor extractor, Path file, ExtractorState state) {
-					actual.add(file.toString());
+					String extracted = file.toString();
+					if (extractor.getConfig().hasFileType())
+						extracted += ":" + extractor.getFileType(file.toFile());
+					actual.add(extracted);
 				}
 
 				@Override
@@ -453,4 +473,33 @@ public void minifiedFilesCanBeReIncluded() throws IOException {
 		addFile(true, LGTM_SRC, "compute_min.js");
 		runTest();
 	}
+
+	@Test
+	public void customExtensions() throws IOException {
+		envVars.put("LGTM_INDEX_FILETYPES", ".jsm:js\n.soy:html");
+		addFile(true, FileType.JS, LGTM_SRC, "tst.jsm");
+		addFile(false, LGTM_SRC, "tstjsm");
+		addFile(true, FileType.HTML, LGTM_SRC, "tst.soy");
+		addFile(true, LGTM_SRC, "tst.html");
+		addFile(true, LGTM_SRC, "tst.js");
+		runTest();
+	}
+
+	@Test
+	public void overrideExtension() throws IOException {
+		envVars.put("LGTM_INDEX_FILETYPES", ".js:typescript");
+		addFile(true, FileType.TYPESCRIPT, LGTM_SRC, "tst.js");
+		runTest();
+	}
+
+	@Test
+	public void invalidFileType() throws IOException {
+		envVars.put("LGTM_INDEX_FILETYPES", ".jsm:javascript");
+		try {
+			runTest();
+			Assert.fail("expected UserError");
+		} catch (UserError ue) {
+			Assert.assertEquals("Invalid file type 'javascript'.", ue.getMessage());
+		}
+	}
 }