From 082857c09ba0bf2047a15d565cdb0b81b380ec69 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 21 Mar 2024 20:53:52 -0500
Subject: [PATCH 001/105] Create Check for CodeQL alerts step in codeql.yml

---
 .github/workflows/codeql.yml | 74 +++++++++++++++++++++++++++++++++++-
 1 file changed, 73 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 85c3f1127d..f507bbdedc 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -75,4 +75,76 @@ jobs:
     - name: Perform CodeQL Analysis
       uses: github/codeql-action/analyze@v3
       with:
-        category: "/language:${{matrix.language}}"
\ No newline at end of file
+        category: "/language:${{matrix.language}}"
+
+    - name: Check for CodeQL alerts
+      uses: actions/github-script@v7
+      with:
+        script: |
+          const fs = require('fs');
+
+          // Get a list of open CodeQL alerts
+          const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
+            headers: {
+              Authorization: `token ${{secrets.H4LA_TOKEN}}`
+            }
+          });
+
+          if (!response.ok) {
+            throw new Error(`Failed to fetch alerts: ${response.status} - ${response.statusText}`);
+          }
+
+          const alerts = await response.json();
+
+          // Check if there are any alerts
+          if (alerts.length > 0) {
+            for (const alert of alerts) {
+              const alertId = alert.number;
+
+              // Check if there is an existing tracking issue for the alert
+              const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
+                headers: {
+                  Authorization: `token ${{secrets.H4LA_TOKEN}}`
+                }
+              });
+
+              if (!searchResponse.ok) {
+                throw new Error(`Failed to search for issues: ${searchResponse.status} - ${searchResponse.statusText}`);
+              }
+
+              const searchResult = await searchResponse.json();
+
+              if (searchResult.items.length === 0) {
+                const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+
+                // Read the template file
+                const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-alert-issues/issue-body.md';
+                let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
+
+                // Replace placeholders with actual values
+                issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
+
+                // Use the modified content as the issue body
+                const issueBody = issueBodyTemplate;
+
+                // Create a new issue
+                const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
+                  method: 'POST',
+                  headers: {
+                    Authorization: `token ${{secrets.H4LA_TOKEN}}`,
+                    'Content-Type': 'application/json'
+                  },
+                  body: JSON.stringify({
+                    title: issueTitle,
+                    body: issueBody,
+                    labels: ['ready for dev lead']
+                  })
+                });
+
+                if (!createIssueResponse.ok) {
+                  throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
+                }
+              }
+            }
+          }
+

From abb26c42d552e74de7343b0db593444dab94e514 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 21 Mar 2024 20:54:37 -0500
Subject: [PATCH 002/105] Make create-codeql-issue folder with issue-body.md
 file

---
 .../create-codeql-issues/issue-body.md        | 25 +++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 github-actions/create-codeql-issues/issue-body.md

diff --git a/github-actions/create-codeql-issues/issue-body.md b/github-actions/create-codeql-issues/issue-body.md
new file mode 100644
index 0000000000..7c2d5e2113
--- /dev/null
+++ b/github-actions/create-codeql-issues/issue-body.md
@@ -0,0 +1,25 @@
+### Prerequisite
+
+1. Be a member of Hack for LA. (There are no fees to join.) If you have not joined yet, please follow the steps on our [Getting Started page](https://www.hackforla.org/getting-started).
+2. Before you claim or start working on an issue, please make sure you have read our [How to Contribute to Hack for LA Guide](https://github.com/hackforla/website/blob/7f0c132c96f71230b8935759e1f8711ccb340c0f/CONTRIBUTING.md).
+
+### Overview
+We need to resolve the new alert [(${alertId})](https://github.com/hackforla/website/security/code-scanning/${alertId}) and either recommend dismissal of the alert or update the code files to resolve the alert.
+
+### Action Items
+- [ ] The following action item serves to "link" this issue as the "tracking issue" for the CodeQL alert and to provide more details regarding the alert: https://github.com/hackforla/website/security/code-scanning/${alertId}
+- [ ] In a comment in this issue, add your analysis and recommendations.  The recommendation can be one of the following: `dismiss as test`, `dismiss as false positive`, `dismiss as won't fix`, or `update code`.  An example of a `false positive` is a report of a JavaScript syntax error that is caused by markdown or liquid symbols such as `---` or `{%`
+- [ ] **If the recommendation is to dismiss the alert:**
+  - [ ] Apply the label `ready for dev lead` 
+  - [ ] Move the issue to `Questions/In Review`
+- [ ] **If the recommendation is to update code:**
+  - [ ] Create an issue branch and proceed with the code update
+  - [ ] Test using docker to ensure that there are no changes to any affected webpage(s)
+  - [ ] Proceed with pull request in the usual manner
+
+### Resources/Instructions
+- [HfLA website: CodeQL scan alert audits - issue 5005](https://docs.google.com/spreadsheets/d/1B3R-fI8OW0LcYuwZICQZ2fB8sjlE3VsfyGIXoReNBIs/edit#gid=193401043)
+- [Code scanning results page](https://github.com/hackforla/website/security/code-scanning)
+- [CodeQL query help for JavaScript](https://codeql.github.com/codeql-query-help/javascript/)
+
+This issue was automatically generated from the codeql.yml workflow
\ No newline at end of file

From fa2b8011cab045fd5433ec2df5906161845e693f Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 21 Mar 2024 20:55:11 -0500
Subject: [PATCH 003/105] Change branch name for testing

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index f507bbdedc..7e4a790078 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ "gh-pages" ]
+    branches: [ "create-new-codeql-issues-5059" ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ "gh-pages" ]
+    branches: [ "create-new-codeql-issues-5059s" ]
   schedule:
     - cron: '30 5 * * 5'
 

From 1569ef5edb61126bf5841d22cd491e49a3823c67 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 21 Mar 2024 21:03:02 -0500
Subject: [PATCH 004/105] Change branch back to gh-pages and token secrets back
 to GITHUB_TOKEN

---
 .github/workflows/codeql.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 7e4a790078..a10c5f68fb 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ "create-new-codeql-issues-5059" ]
+    branches: [ "gh-pages" ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ "create-new-codeql-issues-5059s" ]
+    branches: [ "gh-pages" ]
   schedule:
     - cron: '30 5 * * 5'
 
@@ -86,7 +86,7 @@ jobs:
           // Get a list of open CodeQL alerts
           const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
             headers: {
-              Authorization: `token ${{secrets.H4LA_TOKEN}}`
+              Authorization: `token ${{secrets.GITHUB_TOKEN}}`
             }
           });
 
@@ -104,7 +104,7 @@ jobs:
               // Check if there is an existing tracking issue for the alert
               const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
                 headers: {
-                  Authorization: `token ${{secrets.H4LA_TOKEN}}`
+                  Authorization: `token ${{secrets.GITHUB_TOKEN}}`
                 }
               });
 
@@ -131,7 +131,7 @@ jobs:
                 const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
                   method: 'POST',
                   headers: {
-                    Authorization: `token ${{secrets.H4LA_TOKEN}}`,
+                    Authorization: `token ${{secrets.GITHUB_TOKEN}}`,
                     'Content-Type': 'application/json'
                   },
                   body: JSON.stringify({

From c4aaeac2b797797d69fb3113626a21121a482698 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 21 Mar 2024 21:28:12 -0500
Subject: [PATCH 005/105] Fix issueBodyTemplatePath

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index a10c5f68fb..04566f1ceb 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -118,7 +118,7 @@ jobs:
                 const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
 
                 // Read the template file
-                const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-alert-issues/issue-body.md';
+                const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
                 let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
 
                 // Replace placeholders with actual values

From 044a2f7b981c16fd2ce8ac770ad83feb75e8c00a Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 21 Mar 2024 21:31:05 -0500
Subject: [PATCH 006/105] Move create-codeql-issues folder into trigger-issue
 folder

---
 .../{ => trigger-issue}/create-codeql-issues/issue-body.md        | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename github-actions/{ => trigger-issue}/create-codeql-issues/issue-body.md (100%)

diff --git a/github-actions/create-codeql-issues/issue-body.md b/github-actions/trigger-issue/create-codeql-issues/issue-body.md
similarity index 100%
rename from github-actions/create-codeql-issues/issue-body.md
rename to github-actions/trigger-issue/create-codeql-issues/issue-body.md

From a294d2d9660680c4320171f392fe5138fa8d38d5 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Fri, 22 Mar 2024 08:37:04 -0500
Subject: [PATCH 007/105] Comment out error message for createIssueResponse

---
 .github/workflows/codeql.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 04566f1ceb..5e10991dbe 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -141,9 +141,11 @@ jobs:
                   })
                 });
 
+                /*
                 if (!createIssueResponse.ok) {
                   throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
                 }
+                */
               }
             }
           }

From c83430ff597beafdbc374d89239336aef9b41e6d Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 10:38:18 -0500
Subject: [PATCH 008/105] Refactor codeql.yml and move scripts to separate js
 files

---
 .github/workflows/codeql.yml | 89 +++++++++---------------------------
 1 file changed, 21 insertions(+), 68 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 5e10991dbe..c66a8e3bd6 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -77,76 +77,29 @@ jobs:
       with:
         category: "/language:${{matrix.language}}"
 
-    - name: Check for CodeQL alerts
+    # Fetch Alerts
+    - name: Fetch Alerts
       uses: actions/github-script@v7
       with:
         script: |
-          const fs = require('fs');
+          const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
+          const fetchAlerts = script({ g: github, c: context });
+          return fetchAlerts;
 
-          // Get a list of open CodeQL alerts
-          const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
-            headers: {
-              Authorization: `token ${{secrets.GITHUB_TOKEN}}`
-            }
-          });
-
-          if (!response.ok) {
-            throw new Error(`Failed to fetch alerts: ${response.status} - ${response.statusText}`);
-          }
-
-          const alerts = await response.json();
-
-          // Check if there are any alerts
-          if (alerts.length > 0) {
-            for (const alert of alerts) {
-              const alertId = alert.number;
-
-              // Check if there is an existing tracking issue for the alert
-              const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
-                headers: {
-                  Authorization: `token ${{secrets.GITHUB_TOKEN}}`
-                }
-              });
-
-              if (!searchResponse.ok) {
-                throw new Error(`Failed to search for issues: ${searchResponse.status} - ${searchResponse.statusText}`);
-              }
-
-              const searchResult = await searchResponse.json();
-
-              if (searchResult.items.length === 0) {
-                const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
-
-                // Read the template file
-                const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
-                let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
-
-                // Replace placeholders with actual values
-                issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
-
-                // Use the modified content as the issue body
-                const issueBody = issueBodyTemplate;
-
-                // Create a new issue
-                const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
-                  method: 'POST',
-                  headers: {
-                    Authorization: `token ${{secrets.GITHUB_TOKEN}}`,
-                    'Content-Type': 'application/json'
-                  },
-                  body: JSON.stringify({
-                    title: issueTitle,
-                    body: issueBody,
-                    labels: ['ready for dev lead']
-                  })
-                });
-
-                /*
-                if (!createIssueResponse.ok) {
-                  throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
-                }
-                */
-              }
-            }
-          }
+    # Check Existing Issues
+    - name: Check Existing Issues
+      uses: actions/github-script@v7
+      with:
+        script: |
+          const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
+          const checkIssues = script({ g: github, c: context });
+          return checkIssues;
 
+    # Create New Issues
+    - name: Create New Issues
+      uses: actions/github-script@v7
+      with:
+        script: |
+          const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
+          const newIssues = script({ g: github, c: context });
+          return newIssues;

From 1f4a99844f445e509886fd854a7c7fc0c7157138 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 10:38:33 -0500
Subject: [PATCH 009/105] Create fetch-alerts.js

---
 .../create-codeql-issues/fetch-alerts.js      | 35 +++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100644 github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
new file mode 100644
index 0000000000..714946cc8e
--- /dev/null
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -0,0 +1,35 @@
+const fs = require('fs');
+
+// Global variables
+var github;
+var context;
+
+/**
+ * Fetches a list of open CodeQL alerts from the GitHub API.
+ * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
+ */
+const fetchAlerts = async ({ g, c }) => {
+  // Rename parameters
+  github = g;
+  context = c; 
+
+  // Get a list of open CodeQL alerts
+  const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
+    headers: {
+      Authorization: `token ${{secrets.GITHUB_TOKEN}}`
+    }
+  });
+
+  // Throw error if fetch fails
+  if (!response.ok) {
+    throw new Error(`Failed to fetch alerts: ${response.status} - ${response.statusText}`);
+  }
+
+  // Convert response to JSON
+  const alerts = await response.json();
+
+  // Set output for future scripts in workflow
+  core.setOutput("alerts", alerts);
+};
+
+module.exports = fetchAlerts

From e16ac9c5447e9ed781e08a83aa0e43bff10c13eb Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 10:38:50 -0500
Subject: [PATCH 010/105] Create check-existing-issues.js

---
 .../check-existing-issues.js                  | 46 +++++++++++++++++++
 1 file changed, 46 insertions(+)
 create mode 100644 github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
new file mode 100644
index 0000000000..8c859de44b
--- /dev/null
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -0,0 +1,46 @@
+const fs = require('fs');
+
+// Global variables
+var github;
+var context;
+
+/**
+ * Fetches existing issues for each alert and sets the output for alerts without existing issues.
+ * @returns {Promise<void>}
+ */
+const checkExistingIssues = async ({ g, c }) => {
+  // Rename parameters
+  github = g;
+  context = c; 
+
+  // Get alerts from the fetch-alerts step output
+  const alerts = ${{ steps.fetch-alerts.outputs.alerts }};
+  
+  // Loop through each alert
+  for (const alert of alerts) {
+    const alertId = alert.number;
+
+    // Search for existing issues related to the alert
+    const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
+      headers: {
+        Authorization: `token ${{secrets.GITHUB_TOKEN}}`
+      }
+    });
+
+    // Check if the search request was successful
+    if (!searchResponse.ok) {
+      throw new Error(`Failed to search for issues: ${searchResponse.status} - ${searchResponse.statusText}`);
+    }
+
+    // Convert response to JSON
+    const searchResult = await searchResponse.json();
+
+    // If no existing issues are found, set the alertId output and exit the loop
+    if (searchResult.items.length === 0) {
+      core.setOutput("alertId", alertId);
+      break; // Exit the loop after finding the first alert without an existing issue
+    }
+  }
+};
+
+module.exports = checkExistingIssues

From 6acc62f613e83c5975cca5fce1bbb243a74672a9 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 10:39:09 -0500
Subject: [PATCH 011/105] Create create-new-issues.js

---
 .../create-codeql-issues/create-new-issues.js | 54 +++++++++++++++++++
 1 file changed, 54 insertions(+)
 create mode 100644 github-actions/trigger-issue/create-codeql-issues/create-new-issues.js

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
new file mode 100644
index 0000000000..ec4c9217bd
--- /dev/null
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -0,0 +1,54 @@
+const fs = require('fs');
+
+// Global variables
+var github;
+var context;
+
+/**
+ * Creates new GitHub issues for each alert that doesn't have an existing issue.
+ * @returns {Promise<void>}
+ */
+const createNewIssues = async ({ g, c }) => {
+  // Rename parameters
+  github = g;
+  context = c; 
+
+  // Get the alertId from the check-existing-issues step output
+  const alertId = ${{ steps.check-existing-issues.outputs.alertId }};
+
+  // Create the issue title
+  const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+
+  // Read the issue body template file
+  const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
+  let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
+
+  // Replace placeholders with actual values in the issue body template
+  issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
+
+  // Use the modified content as the issue body
+  const issueBody = issueBodyTemplate;
+
+  // Create a new GitHub issue
+  const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
+    method: 'POST',
+    headers: {
+      Authorization: `token ${{secrets.GITHUB_TOKEN}}`,
+      'Content-Type': 'application/json'
+    },
+    body: JSON.stringify({
+      title: issueTitle,
+      body: issueBody,
+      labels: ['ready for dev lead']
+    })
+  });
+
+  /*
+  if (!createIssueResponse.ok) {
+    throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
+  }
+  */
+};
+
+module.exports = createNewIssues
+

From 8bcf7091beab6ed39474718b72fb6fb5c381dc11 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 10:42:35 -0500
Subject: [PATCH 012/105] Replace branch and token for testing

---
 .github/workflows/codeql.yml                                  | 4 ++--
 .../create-codeql-issues/check-existing-issues.js             | 2 +-
 .../trigger-issue/create-codeql-issues/create-new-issues.js   | 2 +-
 .../trigger-issue/create-codeql-issues/fetch-alerts.js        | 2 +-
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index c66a8e3bd6..2337b30f38 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ "gh-pages" ]
+    branches: [ "create-new-codeql-issues-5059" ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ "gh-pages" ]
+    branches: [ "create-new-codeql-issues-5059" ]
   schedule:
     - cron: '30 5 * * 5'
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 8c859de44b..d78fb4fbee 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -23,7 +23,7 @@ const checkExistingIssues = async ({ g, c }) => {
     // Search for existing issues related to the alert
     const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
       headers: {
-        Authorization: `token ${{secrets.GITHUB_TOKEN}}`
+        Authorization: `token ${{secrets.H4LA_TOKEN}}`
       }
     });
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index ec4c9217bd..894400d671 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -33,7 +33,7 @@ const createNewIssues = async ({ g, c }) => {
   const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
     method: 'POST',
     headers: {
-      Authorization: `token ${{secrets.GITHUB_TOKEN}}`,
+      Authorization: `token ${{secrets.H4LA_TOKEN}}`,
       'Content-Type': 'application/json'
     },
     body: JSON.stringify({
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 714946cc8e..3c27dd4012 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -16,7 +16,7 @@ const fetchAlerts = async ({ g, c }) => {
   // Get a list of open CodeQL alerts
   const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
     headers: {
-      Authorization: `token ${{secrets.GITHUB_TOKEN}}`
+      Authorization: `token ${{secrets.H4LA_TOKEN}}`
     }
   });
 

From c5e96c94df6d1f4152d521e6d756d344f483951c Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 10:58:19 -0500
Subject: [PATCH 013/105] Move secrets to codeql.yml and pass as argument to
 functions

---
 .github/workflows/codeql.yml                                | 6 +++---
 .../create-codeql-issues/check-existing-issues.js           | 4 ++--
 .../trigger-issue/create-codeql-issues/create-new-issues.js | 4 ++--
 .../trigger-issue/create-codeql-issues/fetch-alerts.js      | 6 +++---
 4 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 2337b30f38..5ea0b3d1f9 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -83,7 +83,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context });
+          const fetchAlerts = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
           return fetchAlerts;
 
     # Check Existing Issues
@@ -92,7 +92,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context });
+          const checkIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
           return checkIssues;
 
     # Create New Issues
@@ -101,5 +101,5 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const newIssues = script({ g: github, c: context });
+          const newIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
           return newIssues;
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index d78fb4fbee..86faa51729 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -8,7 +8,7 @@ var context;
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
  * @returns {Promise<void>}
  */
-const checkExistingIssues = async ({ g, c }) => {
+const checkExistingIssues = async ({ g, c, token }) => {
   // Rename parameters
   github = g;
   context = c; 
@@ -23,7 +23,7 @@ const checkExistingIssues = async ({ g, c }) => {
     // Search for existing issues related to the alert
     const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
       headers: {
-        Authorization: `token ${{secrets.H4LA_TOKEN}}`
+        Authorization: `token ${token}`
       }
     });
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 894400d671..818e87078c 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -8,7 +8,7 @@ var context;
  * Creates new GitHub issues for each alert that doesn't have an existing issue.
  * @returns {Promise<void>}
  */
-const createNewIssues = async ({ g, c }) => {
+const createNewIssues = async ({ g, c, token }) => {
   // Rename parameters
   github = g;
   context = c; 
@@ -33,7 +33,7 @@ const createNewIssues = async ({ g, c }) => {
   const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
     method: 'POST',
     headers: {
-      Authorization: `token ${{secrets.H4LA_TOKEN}}`,
+      Authorization: `token ${token}`
       'Content-Type': 'application/json'
     },
     body: JSON.stringify({
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 3c27dd4012..78be653364 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -8,7 +8,7 @@ var context;
  * Fetches a list of open CodeQL alerts from the GitHub API.
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
-const fetchAlerts = async ({ g, c }) => {
+const fetchAlerts = async ({ g, c, token }) => {
   // Rename parameters
   github = g;
   context = c; 
@@ -16,8 +16,8 @@ const fetchAlerts = async ({ g, c }) => {
   // Get a list of open CodeQL alerts
   const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
     headers: {
-      Authorization: `token ${{secrets.H4LA_TOKEN}}`
-    }
+      Authorization: `token ${token}`
+    },
   });
 
   // Throw error if fetch fails

From bd78d8538de9cdea3ecfb48d7b597aa6c6ce87a7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:01:23 -0500
Subject: [PATCH 014/105] Require core in fetch-alerts.js and
 check-existing-issues.js

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js  | 1 +
 .../trigger-issue/create-codeql-issues/fetch-alerts.js           | 1 +
 2 files changed, 2 insertions(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 86faa51729..20a5f15efd 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,4 +1,5 @@
 const fs = require('fs');
+const core = require('@actions/core');
 
 // Global variables
 var github;
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 78be653364..d6957ef2f1 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,4 +1,5 @@
 const fs = require('fs');
+const core = require('@actions/core');
 
 // Global variables
 var github;

From ef67e158845a2f2c11a14c726b0c5a32d7612af0 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:13:46 -0500
Subject: [PATCH 015/105] Remove require core and pass as argument to js files

---
 .github/workflows/codeql.yml                                | 6 +++---
 .../create-codeql-issues/check-existing-issues.js           | 3 +--
 .../trigger-issue/create-codeql-issues/fetch-alerts.js      | 3 +--
 3 files changed, 5 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 5ea0b3d1f9..1964902634 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -83,7 +83,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
+          const fetchAlerts = script({ g: github, c: context, core, token: ${{secrets.H4LA_TOKEN}} });
           return fetchAlerts;
 
     # Check Existing Issues
@@ -92,7 +92,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
+          const checkIssues = script({ g: github, c: context, core token: ${{secrets.H4LA_TOKEN}} });
           return checkIssues;
 
     # Create New Issues
@@ -101,5 +101,5 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const newIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
+          const newIssues = script({ g: github, c: context, core, token: ${{secrets.H4LA_TOKEN}} });
           return newIssues;
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 20a5f15efd..731c888e5b 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -9,7 +8,7 @@ var context;
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
  * @returns {Promise<void>}
  */
-const checkExistingIssues = async ({ g, c, token }) => {
+const checkExistingIssues = async ({ g, c, core, token }) => {
   // Rename parameters
   github = g;
   context = c; 
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index d6957ef2f1..a68ad566b1 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -9,7 +8,7 @@ var context;
  * Fetches a list of open CodeQL alerts from the GitHub API.
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
-const fetchAlerts = async ({ g, c, token }) => {
+const fetchAlerts = async ({ g, c, core, token }) => {
   // Rename parameters
   github = g;
   context = c; 

From c3e7e537967fea23425d3241f55579b3072f2fcb Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:22:45 -0500
Subject: [PATCH 016/105] Swap core with setOutput

---
 .github/workflows/codeql.yml                                | 6 +++---
 .../create-codeql-issues/check-existing-issues.js           | 3 ++-
 .../trigger-issue/create-codeql-issues/fetch-alerts.js      | 3 ++-
 3 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 1964902634..2e609bc0e8 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -83,7 +83,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context, core, token: ${{secrets.H4LA_TOKEN}} });
+          const fetchAlerts = script({ g: github, c: context, setOutput: core.setOutput, token: ${{secrets.H4LA_TOKEN}} });
           return fetchAlerts;
 
     # Check Existing Issues
@@ -92,7 +92,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context, core token: ${{secrets.H4LA_TOKEN}} });
+          const checkIssues = script({ g: github, c: context, setOutput: core.setOutput token: ${{secrets.H4LA_TOKEN}} });
           return checkIssues;
 
     # Create New Issues
@@ -101,5 +101,5 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const newIssues = script({ g: github, c: context, core, token: ${{secrets.H4LA_TOKEN}} });
+          const newIssues = script({ g: github, c: context, setOutput: core.setOutput, token: ${{secrets.H4LA_TOKEN}} });
           return newIssues;
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 731c888e5b..e4da27b04b 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,4 +1,5 @@
 const fs = require('fs');
+const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -8,7 +9,7 @@ var context;
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
  * @returns {Promise<void>}
  */
-const checkExistingIssues = async ({ g, c, core, token }) => {
+const checkExistingIssues = async ({ g, c, setOutput, token }) => {
   // Rename parameters
   github = g;
   context = c; 
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index a68ad566b1..992073b088 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,4 +1,5 @@
 const fs = require('fs');
+const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -8,7 +9,7 @@ var context;
  * Fetches a list of open CodeQL alerts from the GitHub API.
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
-const fetchAlerts = async ({ g, c, core, token }) => {
+const fetchAlerts = async ({ g, c, setOutput, token }) => {
   // Rename parameters
   github = g;
   context = c; 

From b85effbd05da6fea530d465c2a1b92eb7ecb59af Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:23:25 -0500
Subject: [PATCH 017/105] Remove require core

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js  | 1 -
 .../trigger-issue/create-codeql-issues/fetch-alerts.js           | 1 -
 2 files changed, 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index e4da27b04b..e5ca7b0016 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 992073b088..b6403cb621 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;

From f47a6bc34d1d8880339c23497edfe5516ec87257 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:24:58 -0500
Subject: [PATCH 018/105] Remove core from setOutput invocation

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js | 2 +-
 .../trigger-issue/create-codeql-issues/fetch-alerts.js          | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index e5ca7b0016..952c1fbcd1 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -37,7 +37,7 @@ const checkExistingIssues = async ({ g, c, setOutput, token }) => {
 
     // If no existing issues are found, set the alertId output and exit the loop
     if (searchResult.items.length === 0) {
-      core.setOutput("alertId", alertId);
+      setOutput("alertId", alertId);
       break; // Exit the loop after finding the first alert without an existing issue
     }
   }
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index b6403cb621..4d8d749235 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -29,7 +29,7 @@ const fetchAlerts = async ({ g, c, setOutput, token }) => {
   const alerts = await response.json();
 
   // Set output for future scripts in workflow
-  core.setOutput("alerts", alerts);
+  setOutput("alerts", alerts);
 };
 
 module.exports = fetchAlerts

From 60510cd343e4d26366b264e5d29e767bb6ea6ff2 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:26:01 -0500
Subject: [PATCH 019/105] Add comma

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 2e609bc0e8..41a8e37147 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -92,7 +92,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context, setOutput: core.setOutput token: ${{secrets.H4LA_TOKEN}} });
+          const checkIssues = script({ g: github, c: context, setOutput: core.setOutput, token: ${{secrets.H4LA_TOKEN}} });
           return checkIssues;
 
     # Create New Issues

From c7499eb110f816ccde98b310b645a1af7512ddc9 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:30:32 -0500
Subject: [PATCH 020/105] Require in core and remove from arguments

---
 .github/workflows/codeql.yml                                | 6 +++---
 .../create-codeql-issues/check-existing-issues.js           | 5 +++--
 .../trigger-issue/create-codeql-issues/fetch-alerts.js      | 5 +++--
 3 files changed, 9 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 41a8e37147..5ea0b3d1f9 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -83,7 +83,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context, setOutput: core.setOutput, token: ${{secrets.H4LA_TOKEN}} });
+          const fetchAlerts = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
           return fetchAlerts;
 
     # Check Existing Issues
@@ -92,7 +92,7 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context, setOutput: core.setOutput, token: ${{secrets.H4LA_TOKEN}} });
+          const checkIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
           return checkIssues;
 
     # Create New Issues
@@ -101,5 +101,5 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const newIssues = script({ g: github, c: context, setOutput: core.setOutput, token: ${{secrets.H4LA_TOKEN}} });
+          const newIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
           return newIssues;
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 952c1fbcd1..20a5f15efd 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,4 +1,5 @@
 const fs = require('fs');
+const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -8,7 +9,7 @@ var context;
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
  * @returns {Promise<void>}
  */
-const checkExistingIssues = async ({ g, c, setOutput, token }) => {
+const checkExistingIssues = async ({ g, c, token }) => {
   // Rename parameters
   github = g;
   context = c; 
@@ -37,7 +38,7 @@ const checkExistingIssues = async ({ g, c, setOutput, token }) => {
 
     // If no existing issues are found, set the alertId output and exit the loop
     if (searchResult.items.length === 0) {
-      setOutput("alertId", alertId);
+      core.setOutput("alertId", alertId);
       break; // Exit the loop after finding the first alert without an existing issue
     }
   }
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 4d8d749235..d6957ef2f1 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,4 +1,5 @@
 const fs = require('fs');
+const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -8,7 +9,7 @@ var context;
  * Fetches a list of open CodeQL alerts from the GitHub API.
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
-const fetchAlerts = async ({ g, c, setOutput, token }) => {
+const fetchAlerts = async ({ g, c, token }) => {
   // Rename parameters
   github = g;
   context = c; 
@@ -29,7 +30,7 @@ const fetchAlerts = async ({ g, c, setOutput, token }) => {
   const alerts = await response.json();
 
   // Set output for future scripts in workflow
-  setOutput("alerts", alerts);
+  core.setOutput("alerts", alerts);
 };
 
 module.exports = fetchAlerts

From e8ad4042aa9bc925eb6454785ba6caaa6cd6c7a3 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:34:11 -0500
Subject: [PATCH 021/105] Remove core require

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js  | 1 -
 .../trigger-issue/create-codeql-issues/fetch-alerts.js           | 1 -
 2 files changed, 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 20a5f15efd..86faa51729 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index d6957ef2f1..78be653364 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;

From 7ac35fdfb08f86586b2dc133c45412592a09ddc3 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:40:49 -0500
Subject: [PATCH 022/105] Remove return statements

---
 .github/workflows/codeql.yml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 5ea0b3d1f9..6393417a5a 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -84,7 +84,6 @@ jobs:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
           const fetchAlerts = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
-          return fetchAlerts;
 
     # Check Existing Issues
     - name: Check Existing Issues
@@ -93,7 +92,6 @@ jobs:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
           const checkIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
-          return checkIssues;
 
     # Create New Issues
     - name: Create New Issues
@@ -102,4 +100,3 @@ jobs:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const newIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
-          return newIssues;

From b2d321deac8ab0aa1463e7d8e06a67f99a1e2c21 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:41:24 -0500
Subject: [PATCH 023/105] Add console log for testing

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js           | 1 +
 1 file changed, 1 insertion(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 78be653364..4b4feb9e33 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -27,6 +27,7 @@ const fetchAlerts = async ({ g, c, token }) => {
 
   // Convert response to JSON
   const alerts = await response.json();
+  console.log("alerts worked")
 
   // Set output for future scripts in workflow
   core.setOutput("alerts", alerts);

From f87b3756d844113813954b3b34f9b30516e09d1a Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:43:58 -0500
Subject: [PATCH 024/105] Add more console logs for testing

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js         | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 4b4feb9e33..610a352209 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -9,6 +9,7 @@ var context;
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
 const fetchAlerts = async ({ g, c, token }) => {
+  console.log("fetchAlerts starts")
   // Rename parameters
   github = g;
   context = c; 
@@ -19,6 +20,7 @@ const fetchAlerts = async ({ g, c, token }) => {
       Authorization: `token ${token}`
     },
   });
+  console.log('response: ', response);
 
   // Throw error if fetch fails
   if (!response.ok) {
@@ -27,6 +29,7 @@ const fetchAlerts = async ({ g, c, token }) => {
 
   // Convert response to JSON
   const alerts = await response.json();
+  console.log('alerts: ', alerts);
   console.log("alerts worked")
 
   // Set output for future scripts in workflow

From 296cbb745d86820a391ce7888a39b1d10f6635ac Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:52:48 -0500
Subject: [PATCH 025/105] Add env to yml steps and use process.env in token

---
 .github/workflows/codeql.yml | 13 ++++++++++---
 1 file changed, 10 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 6393417a5a..7bb61b95f0 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -80,23 +80,30 @@ jobs:
     # Fetch Alerts
     - name: Fetch Alerts
       uses: actions/github-script@v7
+      env:
+        H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
+          const fetchAlerts = script({ g: github, c: context, token: process.env.H4LA_TOKEN });
 
     # Check Existing Issues
     - name: Check Existing Issues
       uses: actions/github-script@v7
+      env:
+        H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
+          const checkIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN });
 
     # Create New Issues
     - name: Create New Issues
       uses: actions/github-script@v7
+      env:
+        H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const newIssues = script({ g: github, c: context, token: ${{secrets.H4LA_TOKEN}} });
+          const newIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN });
+

From f44068708d15a470ba2bce4354d828ce0e7eb954 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 11:55:24 -0500
Subject: [PATCH 026/105] Require in core

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js | 2 ++
 .../trigger-issue/create-codeql-issues/fetch-alerts.js          | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 86faa51729..c1f517b6d9 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,4 +1,6 @@
 const fs = require('fs');
+const core = require('@actions/core');
+
 
 // Global variables
 var github;
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 610a352209..b86fd14de4 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,4 +1,6 @@
 const fs = require('fs');
+const core = require('@actions/core');
+
 
 // Global variables
 var github;

From 5df8e547b600a4c0491ce785aaa205c8eb0d9ab9 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 12:02:55 -0500
Subject: [PATCH 027/105] Add Set up Node.js step to enable core

---
 .github/workflows/codeql.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 7bb61b95f0..e15500b428 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -77,6 +77,11 @@ jobs:
       with:
         category: "/language:${{matrix.language}}"
 
+    - name: Set up Node.js
+      uses: actions/setup-node@v3
+      with:
+        node-version: '14'
+
     # Fetch Alerts
     - name: Fetch Alerts
       uses: actions/github-script@v7

From c91e01f3b2966f8aa2fdfcccecbd1db7da400bf9 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 12:06:20 -0500
Subject: [PATCH 028/105] Add step to install actions/core module

---
 .github/workflows/codeql.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index e15500b428..a854759450 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -82,6 +82,10 @@ jobs:
       with:
         node-version: '14'
 
+    # Install @actions/core
+    - name: Install @actions/core
+      run: npm install @actions/core
+
     # Fetch Alerts
     - name: Fetch Alerts
       uses: actions/github-script@v7

From 36dfd2be7240cd65428843adf3ba95e830ba75b7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 12:22:39 -0500
Subject: [PATCH 029/105] Declare alerts and alertId in yml file

---
 .github/workflows/codeql.yml                              | 8 ++++++--
 .../create-codeql-issues/check-existing-issues.js         | 5 +----
 .../create-codeql-issues/create-new-issues.js             | 5 +----
 .../trigger-issue/create-codeql-issues/fetch-alerts.js    | 1 -
 4 files changed, 8 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index a854759450..fcfb795274 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -88,6 +88,7 @@ jobs:
 
     # Fetch Alerts
     - name: Fetch Alerts
+      id: fetch-alerts
       uses: actions/github-script@v7
       env:
         H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
@@ -99,12 +100,14 @@ jobs:
     # Check Existing Issues
     - name: Check Existing Issues
       uses: actions/github-script@v7
+      id: check-existing-issues
       env:
         H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const checkIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN });
+          const alerts = ${{ steps.fetch-alerts.outputs.alerts }};
+          const checkIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN, alerts });
 
     # Create New Issues
     - name: Create New Issues
@@ -114,5 +117,6 @@ jobs:
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const newIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN });
+          const alertId = ${{ steps.check-existing-issues.outputs.alertId }};
+          const newIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN, alertId });
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index c1f517b6d9..79303787a4 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -10,13 +10,10 @@ var context;
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
  * @returns {Promise<void>}
  */
-const checkExistingIssues = async ({ g, c, token }) => {
+const checkExistingIssues = async ({ g, c, token, alerts }) => {
   // Rename parameters
   github = g;
   context = c; 
-
-  // Get alerts from the fetch-alerts step output
-  const alerts = ${{ steps.fetch-alerts.outputs.alerts }};
   
   // Loop through each alert
   for (const alert of alerts) {
diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 818e87078c..c75522e081 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -8,14 +8,11 @@ var context;
  * Creates new GitHub issues for each alert that doesn't have an existing issue.
  * @returns {Promise<void>}
  */
-const createNewIssues = async ({ g, c, token }) => {
+const createNewIssues = async ({ g, c, token, alertId }) => {
   // Rename parameters
   github = g;
   context = c; 
 
-  // Get the alertId from the check-existing-issues step output
-  const alertId = ${{ steps.check-existing-issues.outputs.alertId }};
-
   // Create the issue title
   const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index b86fd14de4..faeb0870c7 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,7 +1,6 @@
 const fs = require('fs');
 const core = require('@actions/core');
 
-
 // Global variables
 var github;
 var context;

From a0fa86d4e289dc12b006f37c474c42e397dc224f Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 12:28:12 -0500
Subject: [PATCH 030/105] Add comma to headers in POST request

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index c75522e081..49fefbb267 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -30,7 +30,7 @@ const createNewIssues = async ({ g, c, token, alertId }) => {
   const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
     method: 'POST',
     headers: {
-      Authorization: `token ${token}`
+      Authorization: `token ${token}`,
       'Content-Type': 'application/json'
     },
     body: JSON.stringify({

From 58a94299fcf216a83ab9c1e301acefb2b366ff5b Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 12:48:19 -0500
Subject: [PATCH 031/105] Replace TEAMS with H4LA_TOKEN

---
 .github/workflows/issue-trigger.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/issue-trigger.yml b/.github/workflows/issue-trigger.yml
index 55bfd9af08..41f6af5e1c 100644
--- a/.github/workflows/issue-trigger.yml
+++ b/.github/workflows/issue-trigger.yml
@@ -43,7 +43,7 @@ jobs:
           username: ${{ github.actor }}
           organization: 'hackforla'
           team: 'website-write'
-          GITHUB_TOKEN: ${{ secrets.TEAMS }}
+          GITHUB_TOKEN: ${{ secrets.H4LA_TOKEN }}
           
       # Checks if user is on the website-write-team
       - if: ${{ steps.checkUserMember.outputs.isTeamMember == 'true' }}

From 88f847228bb5d421eef1845add71e06f76bac84d Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 13:05:04 -0500
Subject: [PATCH 032/105] Update node version

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index fcfb795274..a4313d18a0 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -80,7 +80,7 @@ jobs:
     - name: Set up Node.js
       uses: actions/setup-node@v3
       with:
-        node-version: '14'
+        node-version: '20'
 
     # Install @actions/core
     - name: Install @actions/core

From df3078981c2339b82a5960652fa7437cf525677e Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 13:16:23 -0500
Subject: [PATCH 033/105] Revert H4LA_TOKEN to TEAMS

---
 .github/workflows/issue-trigger.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/issue-trigger.yml b/.github/workflows/issue-trigger.yml
index 41f6af5e1c..55bfd9af08 100644
--- a/.github/workflows/issue-trigger.yml
+++ b/.github/workflows/issue-trigger.yml
@@ -43,7 +43,7 @@ jobs:
           username: ${{ github.actor }}
           organization: 'hackforla'
           team: 'website-write'
-          GITHUB_TOKEN: ${{ secrets.H4LA_TOKEN }}
+          GITHUB_TOKEN: ${{ secrets.TEAMS }}
           
       # Checks if user is on the website-write-team
       - if: ${{ steps.checkUserMember.outputs.isTeamMember == 'true' }}

From 4b9fdee0d19536890204032f6c68beebb4245f6f Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 13:22:02 -0500
Subject: [PATCH 034/105] Revert H4LA_TOKEN to GITHUB_TOKEN

---
 .github/workflows/codeql.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index a4313d18a0..d18e58181b 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -91,7 +91,7 @@ jobs:
       id: fetch-alerts
       uses: actions/github-script@v7
       env:
-        H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
+        H4LA_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
@@ -102,7 +102,7 @@ jobs:
       uses: actions/github-script@v7
       id: check-existing-issues
       env:
-        H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
+        H4LA_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
@@ -113,7 +113,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       env:
-        H4LA_TOKEN: ${{ secrets.H4LA_TOKEN }}
+        H4LA_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');

From fc53febf4b1469ed32c4337ced1a6a2e9f943905 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 28 Mar 2024 14:09:41 -0500
Subject: [PATCH 035/105] Remove console logs

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js        | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index faeb0870c7..d6957ef2f1 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -10,7 +10,6 @@ var context;
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
 const fetchAlerts = async ({ g, c, token }) => {
-  console.log("fetchAlerts starts")
   // Rename parameters
   github = g;
   context = c; 
@@ -21,7 +20,6 @@ const fetchAlerts = async ({ g, c, token }) => {
       Authorization: `token ${token}`
     },
   });
-  console.log('response: ', response);
 
   // Throw error if fetch fails
   if (!response.ok) {
@@ -30,8 +28,6 @@ const fetchAlerts = async ({ g, c, token }) => {
 
   // Convert response to JSON
   const alerts = await response.json();
-  console.log('alerts: ', alerts);
-  console.log("alerts worked")
 
   // Set output for future scripts in workflow
   core.setOutput("alerts", alerts);

From 4f033de71ebd5f01cf339946e1662e6b801effa7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:26:38 -0500
Subject: [PATCH 036/105] Update codeql.yml file

---
 .github/workflows/codeql.yml | 30 ++++++++++--------------------
 1 file changed, 10 insertions(+), 20 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index d18e58181b..f3519f4b00 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -77,46 +77,36 @@ jobs:
       with:
         category: "/language:${{matrix.language}}"
 
-    - name: Set up Node.js
-      uses: actions/setup-node@v3
-      with:
-        node-version: '20'
-
-    # Install @actions/core
-    - name: Install @actions/core
-      run: npm install @actions/core
-
     # Fetch Alerts
     - name: Fetch Alerts
       id: fetch-alerts
       uses: actions/github-script@v7
-      env:
-        H4LA_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context, token: process.env.H4LA_TOKEN });
+          const fetchAlerts = script({ g: github, c: context);
+          return fetchAlerts
 
     # Check Existing Issues
     - name: Check Existing Issues
       uses: actions/github-script@v7
       id: check-existing-issues
-      env:
-        H4LA_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
-          const alerts = ${{ steps.fetch-alerts.outputs.alerts }};
-          const checkIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN, alerts });
+          const alerts = ${{ steps.fetch-alerts.outputs.result }};
+          const checkExistingIssues = script({ g: github, c: context, alerts);
+          return checkExistingIssues
 
     # Create New Issues
     - name: Create New Issues
       uses: actions/github-script@v7
-      env:
-        H4LA_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
-          const alertId = ${{ steps.check-existing-issues.outputs.alertId }};
-          const newIssues = script({ g: github, c: context, token: process.env.H4LA_TOKEN, alertId });
+          const alertIds = ${{ steps.check-existing-issues.outputs.result }};
+          const newIssues = script({ g: github, c: context, alertIds);
 

From e548c576e48a830d04bd593114b9f1e66c160dda Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:26:55 -0500
Subject: [PATCH 037/105] Update fetch-alerts.js file

---
 .../create-codeql-issues/fetch-alerts.js      | 20 ++++++++++---------
 1 file changed, 11 insertions(+), 9 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index d6957ef2f1..2a826d2fd2 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,5 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
 
 // Global variables
 var github;
@@ -9,28 +8,31 @@ var context;
  * Fetches a list of open CodeQL alerts from the GitHub API.
  * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
  */
-const fetchAlerts = async ({ g, c, token }) => {
+const fetchAlerts = async ({ g, c }) => {
   // Rename parameters
   github = g;
   context = c; 
 
   // Get a list of open CodeQL alerts
-  const response = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/code-scanning/alerts?state=active`, {
-    headers: {
-      Authorization: `token ${token}`
-    },
+  const fetchAlertsResponse = await github.rest.codeScanning.listAlertsForRepo({
+    owner: context.repo.owner,
+    repo: context.repo.repo,
+    state: 'open',
+    per_page: 100,
+    page: 1,
   });
 
+
   // Throw error if fetch fails
-  if (!response.ok) {
+  if (!fetchAlertsResponse.ok) {
     throw new Error(`Failed to fetch alerts: ${response.status} - ${response.statusText}`);
   }
 
   // Convert response to JSON
   const alerts = await response.json();
+  console.log('alerts: ', alerts);
 
-  // Set output for future scripts in workflow
-  core.setOutput("alerts", alerts);
+  return alerts;
 };
 
 module.exports = fetchAlerts

From b73dab9b2fa173648eb89a01b4f3ef7d1f40aa52 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:27:19 -0500
Subject: [PATCH 038/105] Update check-existing-issues.js file

---
 .../check-existing-issues.js                  | 24 +++++++++++--------
 1 file changed, 14 insertions(+), 10 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 79303787a4..c1dc020be8 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,6 +1,4 @@
 const fs = require('fs');
-const core = require('@actions/core');
-
 
 // Global variables
 var github;
@@ -10,11 +8,14 @@ var context;
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
  * @returns {Promise<void>}
  */
-const checkExistingIssues = async ({ g, c, token, alerts }) => {
+const checkExistingIssues = async ({ g, c, alerts }) => {
   // Rename parameters
   github = g;
-  context = c; 
-  
+  context = c;
+
+  // Array to store alertIds without existing issues
+  let alertIdsWithoutIssues = [];
+
   // Loop through each alert
   for (const alert of alerts) {
     const alertId = alert.number;
@@ -22,8 +23,8 @@ const checkExistingIssues = async ({ g, c, token, alerts }) => {
     // Search for existing issues related to the alert
     const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
       headers: {
-        Authorization: `token ${token}`
-      }
+        Authorization: `token ${github}`,
+      },
     });
 
     // Check if the search request was successful
@@ -33,13 +34,16 @@ const checkExistingIssues = async ({ g, c, token, alerts }) => {
 
     // Convert response to JSON
     const searchResult = await searchResponse.json();
+    console.log('searchResult: ', searchResult);
 
-    // If no existing issues are found, set the alertId output and exit the loop
+    // If no existing issues are found, add the alertId to the array
     if (searchResult.items.length === 0) {
-      core.setOutput("alertId", alertId);
-      break; // Exit the loop after finding the first alert without an existing issue
+      alertIdsWithoutIssues.push(alertId);
     }
   }
+
+  // Return the array of alertIds without existing issues
+  return alertIdsWithoutIssues;
 };
 
 module.exports = checkExistingIssues

From 8e760fb2baddbe82a4c879fe85d0e75715ce019f Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:27:35 -0500
Subject: [PATCH 039/105] Update create-new-issues.js file

---
 .../create-codeql-issues/create-new-issues.js | 73 ++++++++++---------
 1 file changed, 37 insertions(+), 36 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 49fefbb267..3d08c46b90 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -8,44 +8,45 @@ var context;
  * Creates new GitHub issues for each alert that doesn't have an existing issue.
  * @returns {Promise<void>}
  */
-const createNewIssues = async ({ g, c, token, alertId }) => {
+const createNewIssues = async ({ g, c, alertIds }) => {
   // Rename parameters
   github = g;
-  context = c; 
-
-  // Create the issue title
-  const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
-
-  // Read the issue body template file
-  const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
-  let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
-
-  // Replace placeholders with actual values in the issue body template
-  issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
-
-  // Use the modified content as the issue body
-  const issueBody = issueBodyTemplate;
-
-  // Create a new GitHub issue
-  const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
-    method: 'POST',
-    headers: {
-      Authorization: `token ${token}`,
-      'Content-Type': 'application/json'
-    },
-    body: JSON.stringify({
-      title: issueTitle,
-      body: issueBody,
-      labels: ['ready for dev lead']
-    })
-  });
-
-  /*
-  if (!createIssueResponse.ok) {
-    throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
+  context = c;
+
+  // Loop through each alertId
+  for (const alertId of alertIds) {
+    // Create the issue title
+    const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+
+    // Read the issue body template file
+    const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
+    let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
+
+    // Replace placeholders with actual values in the issue body template
+    issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
+
+    // Use the modified content as the issue body
+    const issueBody = issueBodyTemplate;
+
+    // Create a new GitHub issue
+    const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
+      method: 'POST',
+      headers: {
+        Authorization: `token ${token}`,
+        'Content-Type': 'application/json',
+      },
+      body: JSON.stringify({
+        title: issueTitle,
+        body: issueBody,
+        labels: ['ready for dev lead'],
+      }),
+    });
+
+    if (!createIssueResponse.ok) {
+      throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
+    }
+    console.log("issue created");
   }
-  */
 };
 
-module.exports = createNewIssues
-
+module.exports = createNewIssues;

From 6d0537caf2a91e722531c00c51efcd1ed9efe9e8 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:30:43 -0500
Subject: [PATCH 040/105] Replace missing curly braces

---
 .github/workflows/codeql.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index f3519f4b00..39dbc0d64d 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -85,7 +85,7 @@ jobs:
         github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
-          const fetchAlerts = script({ g: github, c: context);
+          const fetchAlerts = script({ g: github, c: context });
           return fetchAlerts
 
     # Check Existing Issues
@@ -97,7 +97,7 @@ jobs:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
           const alerts = ${{ steps.fetch-alerts.outputs.result }};
-          const checkExistingIssues = script({ g: github, c: context, alerts);
+          const checkExistingIssues = script({ g: github, c: context, alerts});
           return checkExistingIssues
 
     # Create New Issues
@@ -108,5 +108,5 @@ jobs:
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};
-          const newIssues = script({ g: github, c: context, alertIds);
+          const newIssues = script({ g: github, c: context, alertIds});
 

From b34426b0c43d7e8cbb3bc14ec9cc1dff0488c81c Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:33:33 -0500
Subject: [PATCH 041/105] Replace response with fetchAlertsResponse

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js        | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 2a826d2fd2..c8e355581c 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -25,11 +25,11 @@ const fetchAlerts = async ({ g, c }) => {
 
   // Throw error if fetch fails
   if (!fetchAlertsResponse.ok) {
-    throw new Error(`Failed to fetch alerts: ${response.status} - ${response.statusText}`);
+    throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);
   }
 
   // Convert response to JSON
-  const alerts = await response.json();
+  const alerts = await fetchAlertsResponse.json();
   console.log('alerts: ', alerts);
 
   return alerts;

From 6138ba7f262e51cfe1463f061100dba069462fd3 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:38:14 -0500
Subject: [PATCH 042/105] Replace listAlertsForRepo with GET request

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js       | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index c8e355581c..d41e60766b 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -14,15 +14,14 @@ const fetchAlerts = async ({ g, c }) => {
   context = c; 
 
   // Get a list of open CodeQL alerts
-  const fetchAlertsResponse = await github.rest.codeScanning.listAlertsForRepo({
+  const fetchAlertsResponse = await github.request('GET /repos/{owner}/{repo}/code-scanning/alerts', {
     owner: context.repo.owner,
     repo: context.repo.repo,
     state: 'open',
     per_page: 100,
-    page: 1,
+    page: 1
   });
 
-
   // Throw error if fetch fails
   if (!fetchAlertsResponse.ok) {
     throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);

From 5d8546d6a0604ab34e8b4d3d7c2dc0e89c0f92b2 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:45:47 -0500
Subject: [PATCH 043/105] Replace ok with 200

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js          | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index d41e60766b..9e0e4faa8e 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -23,7 +23,7 @@ const fetchAlerts = async ({ g, c }) => {
   });
 
   // Throw error if fetch fails
-  if (!fetchAlertsResponse.ok) {
+  if (fetchAlertsResponse.status !== 200) {
     throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);
   }
 

From 41a981bd246ee401cfdbf5acd40a8497368c4f84 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:50:07 -0500
Subject: [PATCH 044/105] Add comments and console log for testing

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js    | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 9e0e4faa8e..e949df92e1 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -6,7 +6,11 @@ var context;
 
 /**
  * Fetches a list of open CodeQL alerts from the GitHub API.
- * @returns {Promise<void>} A promise that resolves when the alerts are fetched.
+ * @param {Object} params - The parameters for the fetch operation.
+ * @param {Object} params.g - The GitHub object for making API requests.
+ * @param {Object} params.c - The context object containing repository information.
+ * @returns {Promise<Array>} A promise that resolves with an array of alerts when the fetch is successful.
+ * @throws {Error} If the fetch operation fails.
  */
 const fetchAlerts = async ({ g, c }) => {
   // Rename parameters
@@ -22,6 +26,8 @@ const fetchAlerts = async ({ g, c }) => {
     page: 1
   });
 
+  console.log("fetchAlertsResponse: ", fetchAlertsResponse);
+
   // Throw error if fetch fails
   if (fetchAlertsResponse.status !== 200) {
     throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);

From 22e80340a32e1afd2d0aa9a42c4e2899cbeb7bb6 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:53:32 -0500
Subject: [PATCH 045/105] Remove .json()

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js      | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index e949df92e1..426060b793 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -33,11 +33,7 @@ const fetchAlerts = async ({ g, c }) => {
     throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);
   }
 
-  // Convert response to JSON
-  const alerts = await fetchAlertsResponse.json();
-  console.log('alerts: ', alerts);
-
-  return alerts;
+  return fetchAlertsResponse.data
 };
 
 module.exports = fetchAlerts

From 96745c6b6535810ae536ee911803c637d1ede328 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 09:56:13 -0500
Subject: [PATCH 046/105] Replace ok with 200

---
 .../create-codeql-issues/check-existing-issues.js              | 2 +-
 .../trigger-issue/create-codeql-issues/fetch-alerts.js         | 3 +--
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index c1dc020be8..2f688c7501 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -28,7 +28,7 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     });
 
     // Check if the search request was successful
-    if (!searchResponse.ok) {
+    if (searchResponse.status !== 200) {
       throw new Error(`Failed to search for issues: ${searchResponse.status} - ${searchResponse.statusText}`);
     }
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 426060b793..7ff69932b9 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -26,13 +26,12 @@ const fetchAlerts = async ({ g, c }) => {
     page: 1
   });
 
-  console.log("fetchAlertsResponse: ", fetchAlertsResponse);
-
   // Throw error if fetch fails
   if (fetchAlertsResponse.status !== 200) {
     throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);
   }
 
+  // Return alerts
   return fetchAlertsResponse.data
 };
 

From 472d26f2547c517308512f89e81b8bd7862b1130 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 10:00:07 -0500
Subject: [PATCH 047/105] Update comments and POST request syntax

---
 .../create-codeql-issues/check-existing-issues.js  | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 2f688c7501..182ae5d55a 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -6,7 +6,11 @@ var context;
 
 /**
  * Fetches existing issues for each alert and sets the output for alerts without existing issues.
- * @returns {Promise<void>}
+ * @param {Object} options - The options object.
+ * @param {string} options.g - The GitHub access token.
+ * @param {Object} options.c - The context object.
+ * @param {Array<Object>} options.alerts - The array of alerts to check.
+ * @returns {Promise<Array<number>>} An array of alert IDs without existing issues.
  */
 const checkExistingIssues = async ({ g, c, alerts }) => {
   // Rename parameters
@@ -21,10 +25,10 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     const alertId = alert.number;
 
     // Search for existing issues related to the alert
-    const searchResponse = await fetch(`https://api.github.com/search/issues?q=repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`, {
-      headers: {
-        Authorization: `token ${github}`,
-      },
+    const searchResponse = await github.request('POST /search/issues', {
+      owner: context.repo.owner,
+      repo: context.repo.repo,
+      q: `repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`,
     });
 
     // Check if the search request was successful

From aa085762057b48094f6e5f368526277a3aa1cee7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 10:06:24 -0500
Subject: [PATCH 048/105] Replace ok with 200 on create-new-issues.js and
 change POST to GET on check-existing-issues.js

---
 .../create-codeql-issues/check-existing-issues.js           | 6 ++----
 .../trigger-issue/create-codeql-issues/create-new-issues.js | 2 +-
 2 files changed, 3 insertions(+), 5 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 182ae5d55a..ab8e9e7d95 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -25,10 +25,8 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     const alertId = alert.number;
 
     // Search for existing issues related to the alert
-    const searchResponse = await github.request('POST /search/issues', {
-      owner: context.repo.owner,
-      repo: context.repo.repo,
-      q: `repo:${context.repo.owner}/${context.repo.repo}+state:open+${encodeURIComponent(`"${alertId}"`)}+in:title`,
+    const searchResponse = await github.request('GET /search/issues', {
+      q: `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`,
     });
 
     // Check if the search request was successful
diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 3d08c46b90..9ae3185486 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -42,7 +42,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       }),
     });
 
-    if (!createIssueResponse.ok) {
+    if (createIssueResponse.status !== 200) {
       throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
     }
     console.log("issue created");

From 5c925ab8a1f88e84e2fb4b0552adb7a1d4f9aed0 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 10:08:51 -0500
Subject: [PATCH 049/105] Replace .json() with .data

---
 .../create-codeql-issues/check-existing-issues.js            | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index ab8e9e7d95..4ac42eec5a 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -34,9 +34,8 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
       throw new Error(`Failed to search for issues: ${searchResponse.status} - ${searchResponse.statusText}`);
     }
 
-    // Convert response to JSON
-    const searchResult = await searchResponse.json();
-    console.log('searchResult: ', searchResult);
+    // Assign response data to variable for access
+    const searchResult = searchResponse.data
 
     // If no existing issues are found, add the alertId to the array
     if (searchResult.items.length === 0) {

From 421513ff7ad25852dc7896f5cea86e4df339e78e Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 10:26:01 -0500
Subject: [PATCH 050/105] Update POST request syntax

---
 .../create-codeql-issues/create-new-issues.js | 20 ++++++++++---------
 1 file changed, 11 insertions(+), 9 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 9ae3185486..5f7eddd61d 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -6,6 +6,10 @@ var context;
 
 /**
  * Creates new GitHub issues for each alert that doesn't have an existing issue.
+ * @param {Object} options - The options object.
+ * @param {string} options.g - The GitHub access token.
+ * @param {Object} options.c - The context object.
+ * @param {Array<number>} options.alertIds - The array of alert IDs to create issues for.
  * @returns {Promise<void>}
  */
 const createNewIssues = async ({ g, c, alertIds }) => {
@@ -29,23 +33,21 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     const issueBody = issueBodyTemplate;
 
     // Create a new GitHub issue
-    const createIssueResponse = await fetch(`https://api.github.com/repos/${context.repo.owner}/${context.repo.repo}/issues`, {
-      method: 'POST',
+    const createIssueResponse = await github.request('POST /repos/{owner}/{repo}/issues', {
+      owner: context.repo.owner,
+      repo: context.repo.repo,
       headers: {
-        Authorization: `token ${token}`,
         'Content-Type': 'application/json',
       },
-      body: JSON.stringify({
-        title: issueTitle,
-        body: issueBody,
-        labels: ['ready for dev lead'],
-      }),
+      title: issueTitle,
+      body: issueBody,
+      labels: ['ready for dev lead'],
     });
 
     if (createIssueResponse.status !== 200) {
       throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
     }
-    console.log("issue created");
+    console.log('issue created');
   }
 };
 

From 64658110cb238dac3dafa763292cc4f6fe0e555e Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 10:31:13 -0500
Subject: [PATCH 051/105] Update comments and change secrets

---
 .github/workflows/codeql.yml                                | 6 +++---
 .../create-codeql-issues/check-existing-issues.js           | 1 +
 .../trigger-issue/create-codeql-issues/create-new-issues.js | 1 +
 .../trigger-issue/create-codeql-issues/fetch-alerts.js      | 2 +-
 4 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 39dbc0d64d..fdb5ddc8a1 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -82,7 +82,7 @@ jobs:
       id: fetch-alerts
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.H4LA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
           const fetchAlerts = script({ g: github, c: context });
@@ -93,7 +93,7 @@ jobs:
       uses: actions/github-script@v7
       id: check-existing-issues
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.H4LA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
           const alerts = ${{ steps.fetch-alerts.outputs.result }};
@@ -104,7 +104,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.H4LA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};
diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 4ac42eec5a..167038baed 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -11,6 +11,7 @@ var context;
  * @param {Object} options.c - The context object.
  * @param {Array<Object>} options.alerts - The array of alerts to check.
  * @returns {Promise<Array<number>>} An array of alert IDs without existing issues.
+ * @throws {Error} If the GET request fails.
  */
 const checkExistingIssues = async ({ g, c, alerts }) => {
   // Rename parameters
diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 5f7eddd61d..a3d6babc97 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -11,6 +11,7 @@ var context;
  * @param {Object} options.c - The context object.
  * @param {Array<number>} options.alertIds - The array of alert IDs to create issues for.
  * @returns {Promise<void>}
+ * @throws {Error} If the POST request fails.
  */
 const createNewIssues = async ({ g, c, alertIds }) => {
   // Rename parameters
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 7ff69932b9..3657d7a910 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -10,7 +10,7 @@ var context;
  * @param {Object} params.g - The GitHub object for making API requests.
  * @param {Object} params.c - The context object containing repository information.
  * @returns {Promise<Array>} A promise that resolves with an array of alerts when the fetch is successful.
- * @throws {Error} If the fetch operation fails.
+ * @throws {Error} If the GET request fails.
  */
 const fetchAlerts = async ({ g, c }) => {
   // Rename parameters

From 42bc5f223254afdc3e47ab34ed78c1f72b2766a4 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 11:20:16 -0500
Subject: [PATCH 052/105] Revert secret name

---
 .github/workflows/codeql.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index fdb5ddc8a1..39dbc0d64d 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -82,7 +82,7 @@ jobs:
       id: fetch-alerts
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.H4LA_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
           const fetchAlerts = script({ g: github, c: context });
@@ -93,7 +93,7 @@ jobs:
       uses: actions/github-script@v7
       id: check-existing-issues
       with:
-        github-token: ${{ secrets.H4LA_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
           const alerts = ${{ steps.fetch-alerts.outputs.result }};
@@ -104,7 +104,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.H4LA_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From 7769774586b9de25320f927ae7826b9cfb9d274d Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 11:20:53 -0500
Subject: [PATCH 053/105] Add comments

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 1 +
 .../trigger-issue/create-codeql-issues/fetch-alerts.js          | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index a3d6babc97..b31b219070 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -45,6 +45,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       labels: ['ready for dev lead'],
     });
 
+    // Throw error if POST request fails
     if (createIssueResponse.status !== 200) {
       throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
     }
diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 3657d7a910..ce43b44925 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -26,7 +26,7 @@ const fetchAlerts = async ({ g, c }) => {
     page: 1
   });
 
-  // Throw error if fetch fails
+  // Throw error if GET request fails
   if (fetchAlertsResponse.status !== 200) {
     throw new Error(`Failed to fetch alerts: ${fetchAlertsResponse.status} - ${fetchAlertsResponse.statusText}`);
   }

From c1e7fbfb87bb8e08408c75ed32b71521026858a7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 11:21:22 -0500
Subject: [PATCH 054/105] Batch API requests to avoid hitting rate limit

---
 .../check-existing-issues.js                  | 46 +++++++++++--------
 1 file changed, 28 insertions(+), 18 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 167038baed..6c753b9e8a 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -18,33 +18,43 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
   github = g;
   context = c;
 
-  // Array to store alertIds without existing issues
+  // Initialize empty array to store alertIds
   let alertIdsWithoutIssues = [];
 
-  // Loop through each alert
-  for (const alert of alerts) {
-    const alertId = alert.number;
-
-    // Search for existing issues related to the alert
-    const searchResponse = await github.request('GET /search/issues', {
-      q: `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`,
-    });
-
-    // Check if the search request was successful
+  // Batch alerts into groups of 10 for each request to avoid rate limit
+  const batchedAlertIds = alerts.reduce((acc, alert, index) => {
+    const batchIndex = Math.floor(index / 10);
+    acc[batchIndex] = acc[batchIndex] || [];
+    acc[batchIndex].push(alert.number);
+    // Returns array of arrays
+    return acc;
+  }, []);
+
+  // Loop through each batch of alerts
+  for (const tenAlertIds of batchedAlertIds) {
+    // Creates one query for multiple IDs
+    const q = tenAlertIds.map(alertId => `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`).join('+OR+');
+
+    // Query GitHub API in batches
+    const searchResponse = await github.request('GET /search/issues', { q });
+    console.log('searchResponse: ', searchResponse);
+
+    // Throw error if GET request fails
     if (searchResponse.status !== 200) {
       throw new Error(`Failed to search for issues: ${searchResponse.status} - ${searchResponse.statusText}`);
     }
 
-    // Assign response data to variable for access
-    const searchResult = searchResponse.data
+    // Store the response data in a variable for easy access
+    const searchResult = searchResponse.data;
+    console.log('searchResult: ', searchResult);
 
-    // If no existing issues are found, add the alertId to the array
-    if (searchResult.items.length === 0) {
-      alertIdsWithoutIssues.push(alertId);
-    }
+    // Push alertIds that do not exist in searchResult to alertIdsWithoutIssues array
+    alertIdsWithoutIssues.push(...alertIds.filter(alertId => !searchResult.items.some(item => item.id === alertId)));
   }
 
-  // Return the array of alertIds without existing issues
+  console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
+
+  // Return flat array of alertIds that do not have issues
   return alertIdsWithoutIssues;
 };
 

From 90a1e6a921aa3c03559039305894834388359be1 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 11:30:01 -0500
Subject: [PATCH 055/105] Add comments

---
 .../create-codeql-issues/check-existing-issues.js         | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 6c753b9e8a..d148c09110 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -23,8 +23,14 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
 
   // Batch alerts into groups of 10 for each request to avoid rate limit
   const batchedAlertIds = alerts.reduce((acc, alert, index) => {
+    // For indexes 0 to 9, batchIndex == 0
+    // For indexes 10 to 19, batchIndex == 1
+    // For indexes 20 to 29, batchIndex == 2
+    // Etc.
     const batchIndex = Math.floor(index / 10);
+    // if acc[batchIndex] == undefined, a new array is created before pushing the alert number
     acc[batchIndex] = acc[batchIndex] || [];
+    // Push alert.number to inner array
     acc[batchIndex].push(alert.number);
     // Returns array of arrays
     return acc;
@@ -32,7 +38,7 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
 
   // Loop through each batch of alerts
   for (const tenAlertIds of batchedAlertIds) {
-    // Creates one query for multiple IDs
+    // Creates one query for multiple alertIds
     const q = tenAlertIds.map(alertId => `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`).join('+OR+');
 
     // Query GitHub API in batches

From 1f5c71c8c1b44f1c773d0ae063b51e510054e93f Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 11:35:33 -0500
Subject: [PATCH 056/105] Adjust alertIdsWithoutIssues.push logic

---
 .../create-codeql-issues/check-existing-issues.js            | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index d148c09110..39faaac8d2 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -54,9 +54,8 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     const searchResult = searchResponse.data;
     console.log('searchResult: ', searchResult);
 
-    // Push alertIds that do not exist in searchResult to alertIdsWithoutIssues array
-    alertIdsWithoutIssues.push(...alertIds.filter(alertId => !searchResult.items.some(item => item.id === alertId)));
-  }
+    // Push alertIds that do not have existing issues in searchResult to output array
+    alertIdsWithoutIssues.push(...tenAlertIds.filter(alertId => !searchResult.items.some(item => item.title.includes(alertId))));
 
   console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
 

From bbdd32846b6c04c53952b9d4c9674276d91c15fa Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 11:37:50 -0500
Subject: [PATCH 057/105] Add console logs

---
 .../create-codeql-issues/check-existing-issues.js            | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 39faaac8d2..f492676091 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -41,6 +41,8 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     // Creates one query for multiple alertIds
     const q = tenAlertIds.map(alertId => `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`).join('+OR+');
 
+    console.log("q: ", q)
+
     // Query GitHub API in batches
     const searchResponse = await github.request('GET /search/issues', { q });
     console.log('searchResponse: ', searchResponse);
@@ -56,9 +58,8 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
 
     // Push alertIds that do not have existing issues in searchResult to output array
     alertIdsWithoutIssues.push(...tenAlertIds.filter(alertId => !searchResult.items.some(item => item.title.includes(alertId))));
-
+  };
   console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
-
   // Return flat array of alertIds that do not have issues
   return alertIdsWithoutIssues;
 };

From a59defbef66ad4e77d2c0a59e091968a57d6c5eb Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:03:40 -0500
Subject: [PATCH 058/105] Reduce batches from 10 to 5 due to GitHub limit

---
 .../create-codeql-issues/check-existing-issues.js  | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index f492676091..cfefa8e28b 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -23,11 +23,11 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
 
   // Batch alerts into groups of 10 for each request to avoid rate limit
   const batchedAlertIds = alerts.reduce((acc, alert, index) => {
-    // For indexes 0 to 9, batchIndex == 0
-    // For indexes 10 to 19, batchIndex == 1
-    // For indexes 20 to 29, batchIndex == 2
+    // For indexes 0 to 4, batchIndex == 0
+    // For indexes 5 to 9, batchIndex == 1
+    // For indexes 10 to 14, batchIndex == 2
     // Etc.
-    const batchIndex = Math.floor(index / 10);
+    const batchIndex = Math.floor(index / 5);
     // if acc[batchIndex] == undefined, a new array is created before pushing the alert number
     acc[batchIndex] = acc[batchIndex] || [];
     // Push alert.number to inner array
@@ -37,9 +37,9 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
   }, []);
 
   // Loop through each batch of alerts
-  for (const tenAlertIds of batchedAlertIds) {
+  for (const fiveAlertIds of batchedAlertIds) {
     // Creates one query for multiple alertIds
-    const q = tenAlertIds.map(alertId => `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`).join('+OR+');
+    const q = fiveAlertIds.map(alertId => `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`).join('+OR+');
 
     console.log("q: ", q)
 
@@ -57,7 +57,7 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     console.log('searchResult: ', searchResult);
 
     // Push alertIds that do not have existing issues in searchResult to output array
-    alertIdsWithoutIssues.push(...tenAlertIds.filter(alertId => !searchResult.items.some(item => item.title.includes(alertId))));
+    alertIdsWithoutIssues.push(...fiveAlertIds.filter(alertId => !searchResult.items.some(item => item.title.includes(alertId))));
   };
   console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
   // Return flat array of alertIds that do not have issues

From 2c4d5ace948f6a65ebc0b5a35fc135376a6236e8 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:07:58 -0500
Subject: [PATCH 059/105] Adjust createIssueResponse query

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js   | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index b31b219070..6f620c67c3 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -34,9 +34,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     const issueBody = issueBodyTemplate;
 
     // Create a new GitHub issue
-    const createIssueResponse = await github.request('POST /repos/{owner}/{repo}/issues', {
-      owner: context.repo.owner,
-      repo: context.repo.repo,
+    const createIssueResponse = await github.request('POST /repos/{context.repo.owner}/{context.repo.repo}/issues', {
       headers: {
         'Content-Type': 'application/json',
       },

From 09009b6cebbfe3f7d1537ff6f0e6bdfee2551dfb Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:11:04 -0500
Subject: [PATCH 060/105] Add comment

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js  | 1 +
 1 file changed, 1 insertion(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index cfefa8e28b..b8abcfd4fd 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -22,6 +22,7 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
   let alertIdsWithoutIssues = [];
 
   // Batch alerts into groups of 10 for each request to avoid rate limit
+  // Limit for /search/issues endpoint is 30 requests
   const batchedAlertIds = alerts.reduce((acc, alert, index) => {
     // For indexes 0 to 4, batchIndex == 0
     // For indexes 5 to 9, batchIndex == 1

From edca295ec98264bdc834388034cc0e2cf8725cb3 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:13:07 -0500
Subject: [PATCH 061/105] Add template literals to query url and add comment
 for testing

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js   | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 6f620c67c3..6fc658d478 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -34,7 +34,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     const issueBody = issueBodyTemplate;
 
     // Create a new GitHub issue
-    const createIssueResponse = await github.request('POST /repos/{context.repo.owner}/{context.repo.repo}/issues', {
+    const createIssueResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/issues`, {
       headers: {
         'Content-Type': 'application/json',
       },
@@ -43,6 +43,8 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       labels: ['ready for dev lead'],
     });
 
+    console.log('createIssueResponse:', createIssueResponse);
+
     // Throw error if POST request fails
     if (createIssueResponse.status !== 200) {
       throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);

From 38b243931f9e805a186fd638d9dc6babd3352519 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:19:36 -0500
Subject: [PATCH 062/105] Change 200 to 201

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 6fc658d478..a521b66956 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -46,7 +46,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     console.log('createIssueResponse:', createIssueResponse);
 
     // Throw error if POST request fails
-    if (createIssueResponse.status !== 200) {
+    if (createIssueResponse.status !== 201) {
       throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
     }
     console.log('issue created');

From f48be3ea385890ec4acf2f5ed59e44ed623c072b Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:55:42 -0500
Subject: [PATCH 063/105] Update comment

---
 .../create-codeql-issues/check-existing-issues.js              | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index b8abcfd4fd..df905e06bb 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -21,8 +21,7 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
   // Initialize empty array to store alertIds
   let alertIdsWithoutIssues = [];
 
-  // Batch alerts into groups of 10 for each request to avoid rate limit
-  // Limit for /search/issues endpoint is 30 requests
+  // Batch alerts into groups of 5 for each request to avoid rate limit
   const batchedAlertIds = alerts.reduce((acc, alert, index) => {
     // For indexes 0 to 4, batchIndex == 0
     // For indexes 5 to 9, batchIndex == 1

From da760a93dbdfb825a5a7f129cbbb711fe9c6bf60 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 12:56:00 -0500
Subject: [PATCH 064/105] Batch issue creation requests to avoid rate limit

---
 .../create-codeql-issues/create-new-issues.js | 77 +++++++++++--------
 1 file changed, 46 insertions(+), 31 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index a521b66956..11e15fb5c3 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -1,8 +1,8 @@
 const fs = require('fs');
 
 // Global variables
-var github;
-var context;
+let github;
+let context;
 
 /**
  * Creates new GitHub issues for each alert that doesn't have an existing issue.
@@ -18,39 +18,54 @@ const createNewIssues = async ({ g, c, alertIds }) => {
   github = g;
   context = c;
 
-  // Loop through each alertId
-  for (const alertId of alertIds) {
-    // Create the issue title
-    const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+  // Batch alerts into groups of 5 for each request to avoid rate limit
+  const batchedAlertIds = alertIds.reduce((acc, alertId, index) => {
+    // For indexes 0 to 4, batchIndex == 0
+    // For indexes 5 to 9, batchIndex == 1
+    // For indexes 10 to 14, batchIndex == 2
+    // Etc.
+    const batchIndex = Math.floor(index / 5);
+    // if acc[batchIndex] == undefined, a new array is created before pushing the alert number
+    acc[batchIndex] = acc[batchIndex] || [];
+    // Push alert.number to inner array
+    acc[batchIndex].push(alertId);
+    // Returns array of arrays
+    return acc;
+  }, []);
 
-    // Read the issue body template file
-    const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
-    let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
+  // Create batch request payload
+  const batchRequests = batchedAlertIds.map(alertIdsBatch => ({
+    method: 'POST',
+    url: `/repos/${context.repo.owner}/${context.repo.repo}/issues/batch`,
+    headers: {
+      'Content-Type': 'application/json',
+    },
+    body: JSON.stringify({
+      alerts: alertIdsBatch.map(alertId => ({
+        title: `Resolve CodeQL query #${alertId} - generated by GHA`,
+        body: fs.readFileSync('github-actions/trigger-issue/create-codeql-issues/issue-body.md', 'utf8').replace(/\${alertId}/g, alertId),
+        labels: ['ready for dev lead'],
+      })),
+    }),
+  }));
 
-    // Replace placeholders with actual values in the issue body template
-    issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
+  // Send batch request
+  const batchResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/batch`, {
+    headers: {
+      'Content-Type': 'application/json',
+    },
+    body: JSON.stringify({
+      requests: batchRequests,
+    }),
+  });
 
-    // Use the modified content as the issue body
-    const issueBody = issueBodyTemplate;
-
-    // Create a new GitHub issue
-    const createIssueResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/issues`, {
-      headers: {
-        'Content-Type': 'application/json',
-      },
-      title: issueTitle,
-      body: issueBody,
-      labels: ['ready for dev lead'],
-    });
-
-    console.log('createIssueResponse:', createIssueResponse);
-
-    // Throw error if POST request fails
-    if (createIssueResponse.status !== 201) {
-      throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
+  // Throw error if POST request fails
+  batchResponse.data.forEach((response, index) => {
+    if (response.status !== 201) {
+      throw new Error(`Failed to create issue for alert ${alertIds[index]}: ${response.status} - ${response.statusText}`);
     }
-    console.log('issue created');
-  }
+    console.log('Issue created for alert', alertIds[index]);
+  });
 };
 
 module.exports = createNewIssues;

From a586f95e3d0d20b9b3ce2695988c759c19d3ac44 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 13:07:21 -0500
Subject: [PATCH 065/105] Adjust batching of new issue requests

---
 .../create-codeql-issues/create-new-issues.js | 86 +++++++++----------
 1 file changed, 43 insertions(+), 43 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 11e15fb5c3..ed4c8e6260 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -18,54 +18,54 @@ const createNewIssues = async ({ g, c, alertIds }) => {
   github = g;
   context = c;
 
-  // Batch alerts into groups of 5 for each request to avoid rate limit
-  const batchedAlertIds = alertIds.reduce((acc, alertId, index) => {
-    // For indexes 0 to 4, batchIndex == 0
-    // For indexes 5 to 9, batchIndex == 1
-    // For indexes 10 to 14, batchIndex == 2
-    // Etc.
-    const batchIndex = Math.floor(index / 5);
-    // if acc[batchIndex] == undefined, a new array is created before pushing the alert number
-    acc[batchIndex] = acc[batchIndex] || [];
-    // Push alert.number to inner array
-    acc[batchIndex].push(alertId);
-    // Returns array of arrays
-    return acc;
-  }, []);
+  // Batch alertIds into groups of 10 for each request
+  const batchSize = 10;
+  const batches = [];
+  for (let i = 0; i < alertIds.length; i += batchSize) {
+    batches.push(alertIds.slice(i, i + batchSize));
+  }
 
-  // Create batch request payload
-  const batchRequests = batchedAlertIds.map(alertIdsBatch => ({
-    method: 'POST',
-    url: `/repos/${context.repo.owner}/${context.repo.repo}/issues/batch`,
-    headers: {
-      'Content-Type': 'application/json',
-    },
-    body: JSON.stringify({
-      alerts: alertIdsBatch.map(alertId => ({
-        title: `Resolve CodeQL query #${alertId} - generated by GHA`,
-        body: fs.readFileSync('github-actions/trigger-issue/create-codeql-issues/issue-body.md', 'utf8').replace(/\${alertId}/g, alertId),
+  // Loop through each batch of alertIds
+  for (const batch of batches) {
+    // Create the issues array for the batch
+    const issues = batch.map(alertId => {
+      // Create the issue title
+      const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+
+      // Read the issue body template file
+      const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
+      let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
+
+      // Replace placeholders with actual values in the issue body template
+      issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
+
+      // Use the modified content as the issue body
+      const issueBody = issueBodyTemplate;
+
+      return {
+        title: issueTitle,
+        body: issueBody,
         labels: ['ready for dev lead'],
-      })),
-    }),
-  }));
+      };
+    });
+
+    // Create a new GitHub issue for the batch
+    const createIssuesResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/issues`, {
+      headers: {
+        'Content-Type': 'application/json',
+      },
+      method: 'POST',
+      body: JSON.stringify(issues),
+    });
 
-  // Send batch request
-  const batchResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/batch`, {
-    headers: {
-      'Content-Type': 'application/json',
-    },
-    body: JSON.stringify({
-      requests: batchRequests,
-    }),
-  });
+    console.log('createIssuesResponse:', createIssuesResponse);
 
-  // Throw error if POST request fails
-  batchResponse.data.forEach((response, index) => {
-    if (response.status !== 201) {
-      throw new Error(`Failed to create issue for alert ${alertIds[index]}: ${response.status} - ${response.statusText}`);
+    // Throw error if POST request fails (201 not created)
+    if (createIssuesResponse.status !== 201) {
+      throw new Error(`Failed to create issues for batch: ${createIssuesResponse.status} - ${createIssuesResponse.statusText}`);
     }
-    console.log('Issue created for alert', alertIds[index]);
-  });
+    console.log('issues created');
+  }
 };
 
 module.exports = createNewIssues;

From ea352cf18cab973d8a4a59958abec697028ea59a Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 13:09:14 -0500
Subject: [PATCH 066/105] Revert changes

---
 .../create-codeql-issues/create-new-issues.js | 59 +++++++------------
 1 file changed, 22 insertions(+), 37 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index ed4c8e6260..608d82a15f 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -1,8 +1,8 @@
 const fs = require('fs');
 
 // Global variables
-let github;
-let context;
+var github;
+var context;
 
 /**
  * Creates new GitHub issues for each alert that doesn't have an existing issue.
@@ -18,53 +18,38 @@ const createNewIssues = async ({ g, c, alertIds }) => {
   github = g;
   context = c;
 
-  // Batch alertIds into groups of 10 for each request
-  const batchSize = 10;
-  const batches = [];
-  for (let i = 0; i < alertIds.length; i += batchSize) {
-    batches.push(alertIds.slice(i, i + batchSize));
-  }
-
-  // Loop through each batch of alertIds
-  for (const batch of batches) {
-    // Create the issues array for the batch
-    const issues = batch.map(alertId => {
-      // Create the issue title
-      const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+  // Loop through each alertId
+  for (const alertId of alertIds) {
+    // Create the issue title
+    const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
 
-      // Read the issue body template file
-      const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
-      let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
+    // Read the issue body template file
+    const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
+    let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
 
-      // Replace placeholders with actual values in the issue body template
-      issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
+    // Replace placeholders with actual values in the issue body template
+    issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
 
-      // Use the modified content as the issue body
-      const issueBody = issueBodyTemplate;
-
-      return {
-        title: issueTitle,
-        body: issueBody,
-        labels: ['ready for dev lead'],
-      };
-    });
+    // Use the modified content as the issue body
+    const issueBody = issueBodyTemplate;
 
-    // Create a new GitHub issue for the batch
-    const createIssuesResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/issues`, {
+    // Create a new GitHub issue
+    const createIssueResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/issues`, {
       headers: {
         'Content-Type': 'application/json',
       },
-      method: 'POST',
-      body: JSON.stringify(issues),
+      title: issueTitle,
+      body: issueBody,
+      labels: ['ready for dev lead'],
     });
 
-    console.log('createIssuesResponse:', createIssuesResponse);
+    console.log('createIssueResponse:', createIssueResponse);
 
     // Throw error if POST request fails (201 not created)
-    if (createIssuesResponse.status !== 201) {
-      throw new Error(`Failed to create issues for batch: ${createIssuesResponse.status} - ${createIssuesResponse.statusText}`);
+    if (createIssueResponse.status !== 201) {
+      throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
     }
-    console.log('issues created');
+    console.log('issue created');
   }
 };
 

From 5ea64a6f7340f3194e47aa5c3d577307b27a9206 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 14:25:29 -0500
Subject: [PATCH 067/105] Remove comment

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js      | 1 -
 1 file changed, 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 608d82a15f..630d2f4765 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -49,7 +49,6 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     if (createIssueResponse.status !== 201) {
       throw new Error(`Failed to create issue for alert ${alertId}: ${createIssueResponse.status} - ${createIssueResponse.statusText}`);
     }
-    console.log('issue created');
   }
 };
 

From bb480885417f679b5a417c1356244ddc39b2c423 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 14:51:33 -0500
Subject: [PATCH 068/105] Move console log

---
 .../create-codeql-issues/check-existing-issues.js          | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index df905e06bb..79ffa2109e 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -41,11 +41,8 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
     // Creates one query for multiple alertIds
     const q = fiveAlertIds.map(alertId => `repo:${context.repo.owner}/${context.repo.repo}+state:open+"${alertId}"+in:title`).join('+OR+');
 
-    console.log("q: ", q)
-
     // Query GitHub API in batches
     const searchResponse = await github.request('GET /search/issues', { q });
-    console.log('searchResponse: ', searchResponse);
 
     // Throw error if GET request fails
     if (searchResponse.status !== 200) {
@@ -54,13 +51,13 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
 
     // Store the response data in a variable for easy access
     const searchResult = searchResponse.data;
-    console.log('searchResult: ', searchResult);
 
     // Push alertIds that do not have existing issues in searchResult to output array
     alertIdsWithoutIssues.push(...fiveAlertIds.filter(alertId => !searchResult.items.some(item => item.title.includes(alertId))));
   };
-  console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
+
   // Return flat array of alertIds that do not have issues
+  console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
   return alertIdsWithoutIssues;
 };
 

From 61c5884fbe45a6a363f0f6707aa53a6fce42154b Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 14:55:38 -0500
Subject: [PATCH 069/105] Update console log

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 630d2f4765..8305345c85 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -43,7 +43,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       labels: ['ready for dev lead'],
     });
 
-    console.log('createIssueResponse:', createIssueResponse);
+    console.log('Issues Created:', createIssueResponse.data.title);
 
     // Throw error if POST request fails (201 not created)
     if (createIssueResponse.status !== 201) {

From 79bd852e104500478bd528e655f3d87f8cc89120 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 14:56:47 -0500
Subject: [PATCH 070/105] Update console log

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 8305345c85..53859f511e 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -43,7 +43,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       labels: ['ready for dev lead'],
     });
 
-    console.log('Issues Created:', createIssueResponse.data.title);
+    console.log('Issue Created:', createIssueResponse.data.title);
 
     // Throw error if POST request fails (201 not created)
     if (createIssueResponse.status !== 201) {

From 6c417c7eda8f5ea6e43856e1cd03a7473d99cda2 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 14:58:06 -0500
Subject: [PATCH 071/105] Update console log

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 53859f511e..5f77e6bde5 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -43,7 +43,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       labels: ['ready for dev lead'],
     });
 
-    console.log('Issue Created:', createIssueResponse.data.title);
+    console.log('Issue Created:', createIssueResponse.data.title, createIssueResponse.data.html_url);
 
     // Throw error if POST request fails (201 not created)
     if (createIssueResponse.status !== 201) {

From f97ad3301a5633fc2c86a97fd79d22e096a94f83 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sat, 30 Mar 2024 15:54:17 -0500
Subject: [PATCH 072/105] Replaced test branch with gh-pages

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 39dbc0d64d..0c8472bf41 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ "create-new-codeql-issues-5059" ]
+    branches: [ 'gh-pages' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ "create-new-codeql-issues-5059" ]
+    branches: [ 'gh-pages' ]
   schedule:
     - cron: '30 5 * * 5'
 

From 790c4eeff5481b64c1d7556da3bf5e066bdb9318 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Tue, 2 Apr 2024 09:56:50 -0500
Subject: [PATCH 073/105] Update console logs and comments

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js | 2 +-
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index 79ffa2109e..fde5d8788b 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -57,7 +57,7 @@ const checkExistingIssues = async ({ g, c, alerts }) => {
   };
 
   // Return flat array of alertIds that do not have issues
-  console.log('alertIdsWithoutIssues: ', alertIdsWithoutIssues);
+  console.log('alertIds without issues: ', alertIdsWithoutIssues);
   return alertIdsWithoutIssues;
 };
 
diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 5f77e6bde5..b8587c9024 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -43,6 +43,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
       labels: ['ready for dev lead'],
     });
 
+    // Log issue titles and links in GHA workflow
     console.log('Issue Created:', createIssueResponse.data.title, createIssueResponse.data.html_url);
 
     // Throw error if POST request fails (201 not created)

From 7fefb6bacdec18d6470d931ee83facf432b68e27 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Wed, 3 Apr 2024 12:23:51 -0500
Subject: [PATCH 074/105] Removed fs and updated issueTitle

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js   | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index b8587c9024..79a693f83b 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -1,5 +1,3 @@
-const fs = require('fs');
-
 // Global variables
 var github;
 var context;
@@ -21,7 +19,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
   // Loop through each alertId
   for (const alertId of alertIds) {
     // Create the issue title
-    const issueTitle = `Resolve CodeQL query #${alertId} - generated by GHA`;
+    const issueTitle = `Resolve CodeQL Alert #${alertId} - Generated by GHA`;
 
     // Read the issue body template file
     const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';

From 16e4f1b2d419f510b6d8daf364b9c738b8fab2f7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Wed, 3 Apr 2024 12:23:59 -0500
Subject: [PATCH 075/105] Removed fs

---
 .../trigger-issue/create-codeql-issues/check-existing-issues.js | 2 --
 1 file changed, 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
index fde5d8788b..d3e18f8547 100644
--- a/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js
@@ -1,5 +1,3 @@
-const fs = require('fs');
-
 // Global variables
 var github;
 var context;

From f56f591c02569f01a647acf6e8e11dc15a8a6af7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Wed, 3 Apr 2024 12:29:06 -0500
Subject: [PATCH 076/105] Add fs back in

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js     | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 79a693f83b..cee31b7180 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -1,3 +1,5 @@
+const fs = require('fs');
+
 // Global variables
 var github;
 var context;

From 50d17cbdc043d1c2951fe4da8da87e5f8af2ce87 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Wed, 3 Apr 2024 12:29:15 -0500
Subject: [PATCH 077/105] Remove fs

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js          | 2 --
 1 file changed, 2 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index ce43b44925..94c119d0f3 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,5 +1,3 @@
-const fs = require('fs');
-
 // Global variables
 var github;
 var context;

From 63f4a95e7fa9b82ea60a3e081220b1b55fcd8c44 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Wed, 3 Apr 2024 14:52:17 -0500
Subject: [PATCH 078/105] Add HACKFORLA_ADMIN_TOKEN in fetch-alerts secret

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 0c8472bf41..92a05fba85 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -82,7 +82,7 @@ jobs:
       id: fetch-alerts
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_ADMIN_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
           const fetchAlerts = script({ g: github, c: context });

From ca49d34e27906787c76d8a7af9a596ebeab3048a Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Wed, 3 Apr 2024 17:30:57 -0500
Subject: [PATCH 079/105] Revert secret back to HACKFORLA_BOT_PA_TOKEN

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 92a05fba85..0c8472bf41 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -82,7 +82,7 @@ jobs:
       id: fetch-alerts
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_ADMIN_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
           const fetchAlerts = script({ g: github, c: context });

From 7961ff2c2376f5807455dabd6ed7c92aabbe077f Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 4 Apr 2024 17:00:10 -0500
Subject: [PATCH 080/105] Swap bot token for GITHUB_TOKEN

---
 .github/workflows/codeql.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 0c8472bf41..6cd10a7700 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -82,7 +82,7 @@ jobs:
       id: fetch-alerts
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js');
           const fetchAlerts = script({ g: github, c: context });
@@ -93,7 +93,7 @@ jobs:
       uses: actions/github-script@v7
       id: check-existing-issues
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/check-existing-issues.js');
           const alerts = ${{ steps.fetch-alerts.outputs.result }};
@@ -104,7 +104,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From be8de71937c283b210244f1e9b625fcd87dc5905 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 4 Apr 2024 17:03:28 -0500
Subject: [PATCH 081/105] Replace GITHUB_TOKEN with HACKFORLA_BOT_PA_TOKEN on
 Create New Issues step

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 6cd10a7700..c27ecbbccf 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -104,7 +104,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.GITHUB_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From bcc7673604c56a1f31f69d1e69d09184e2096d3d Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Thu, 4 Apr 2024 17:10:51 -0500
Subject: [PATCH 082/105] Revert token on Create New Issues

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index c27ecbbccf..6cd10a7700 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -104,7 +104,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From 9dd363a0816b4efd323a5d33815de8593e45ec49 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Fri, 5 Apr 2024 20:11:28 -0500
Subject: [PATCH 083/105] Add How to manage CodeQL alerts to issue template

---
 github-actions/trigger-issue/create-codeql-issues/issue-body.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/issue-body.md b/github-actions/trigger-issue/create-codeql-issues/issue-body.md
index 7c2d5e2113..06e4b12a52 100644
--- a/github-actions/trigger-issue/create-codeql-issues/issue-body.md
+++ b/github-actions/trigger-issue/create-codeql-issues/issue-body.md
@@ -21,5 +21,6 @@ We need to resolve the new alert [(${alertId})](https://github.com/hackforla/web
 - [HfLA website: CodeQL scan alert audits - issue 5005](https://docs.google.com/spreadsheets/d/1B3R-fI8OW0LcYuwZICQZ2fB8sjlE3VsfyGIXoReNBIs/edit#gid=193401043)
 - [Code scanning results page](https://github.com/hackforla/website/security/code-scanning)
 - [CodeQL query help for JavaScript](https://codeql.github.com/codeql-query-help/javascript/)
+- [How to manage CodeQL alerts](https://github.com/hackforla/website/issues/6463#issuecomment-2002573270 )
 
 This issue was automatically generated from the codeql.yml workflow
\ No newline at end of file

From a38a50b75a54d6f3a5c983c664cfda1e51717f30 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 7 Apr 2024 17:04:57 -0500
Subject: [PATCH 084/105] Add workflow_dispatch for manual retries

---
 .github/workflows/codeql.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 6cd10a7700..b53486fe81 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -19,6 +19,7 @@ on:
     branches: [ 'gh-pages' ]
   schedule:
     - cron: '30 5 * * 5'
+  workflow_dispatch:
 
 jobs:
   analyze:
@@ -104,7 +105,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.GITHUB_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From 8b5a055acdfd6e71f76749861d0550668f683dfc Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 7 Apr 2024 17:05:07 -0500
Subject: [PATCH 085/105] Update put request to use create function

---
 .../create-codeql-issues/create-new-issues.js | 19 +++++++++----------
 1 file changed, 9 insertions(+), 10 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index cee31b7180..91ea917d0c 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -21,7 +21,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
   // Loop through each alertId
   for (const alertId of alertIds) {
     // Create the issue title
-    const issueTitle = `Resolve CodeQL Alert #${alertId} - Generated by GHA`;
+    const title = `Resolve CodeQL Alert #${alertId} - Generated by GHA`;
 
     // Read the issue body template file
     const issueBodyTemplatePath = 'github-actions/trigger-issue/create-codeql-issues/issue-body.md';
@@ -31,17 +31,16 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
 
     // Use the modified content as the issue body
-    const issueBody = issueBodyTemplate;
+    const body = issueBodyTemplate;
 
     // Create a new GitHub issue
-    const createIssueResponse = await github.request(`POST /repos/${context.repo.owner}/${context.repo.repo}/issues`, {
-      headers: {
-        'Content-Type': 'application/json',
-      },
-      title: issueTitle,
-      body: issueBody,
-      labels: ['ready for dev lead'],
-    });
+    const createIssueResponse = await github.rest.issues.create({
+      owner: context.repo.owner,
+      repo: context.repo.repo,
+      title,
+      body,
+      labels: ['ready for dev lead']
+    });      
 
     // Log issue titles and links in GHA workflow
     console.log('Issue Created:', createIssueResponse.data.title, createIssueResponse.data.html_url);

From a80a14b258d22153fd50c7fb66f5afdb6979b884 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 7 Apr 2024 17:09:53 -0500
Subject: [PATCH 086/105] Refactor body variable

---
 .../trigger-issue/create-codeql-issues/create-new-issues.js  | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
index 91ea917d0c..a6ab6681fc 100644
--- a/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
+++ b/github-actions/trigger-issue/create-codeql-issues/create-new-issues.js
@@ -28,10 +28,7 @@ const createNewIssues = async ({ g, c, alertIds }) => {
     let issueBodyTemplate = fs.readFileSync(issueBodyTemplatePath, 'utf8');
 
     // Replace placeholders with actual values in the issue body template
-    issueBodyTemplate = issueBodyTemplate.replace(/\${alertId}/g, alertId);
-
-    // Use the modified content as the issue body
-    const body = issueBodyTemplate;
+    const body = issueBodyTemplate.replace(/\${alertId}/g, alertId);
 
     // Create a new GitHub issue
     const createIssueResponse = await github.rest.issues.create({

From d2c9aad70756160e1fde28819b4a44d2a7e47293 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 7 Apr 2024 17:13:09 -0500
Subject: [PATCH 087/105] Change token

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index b53486fe81..0160f45ab8 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -105,7 +105,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_BOT_PA_TOKEN }}
+        github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From dd7589712ee077c877e96204bb760e8f6d391872 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 13:12:17 -0500
Subject: [PATCH 088/105] Changed GITHUB_TOKEN to HACKFORLA_ADMIN_TOKEN

---
 .github/workflows/codeql.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 0160f45ab8..f5b577f88c 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -105,7 +105,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.GITHUB_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_ADMIN_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From f63c6329e0753e31a854def910a4a41e6b64f1fb Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 13:22:14 -0500
Subject: [PATCH 089/105] Add issues: write to permissions

---
 .github/workflows/codeql.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index f5b577f88c..c0292dbeb4 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -30,6 +30,7 @@ jobs:
       actions: read
       contents: read
       security-events: write
+      issues: write
 
     strategy:
       fail-fast: false
@@ -105,7 +106,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.HACKFORLA_ADMIN_TOKEN }}
+        github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From f80fe351c7c06ebdbf6c36ced1698237c666b4db Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 13:32:55 -0500
Subject: [PATCH 090/105] Change permissions to write-all

---
 .github/workflows/codeql.yml | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index c0292dbeb4..64f72fa297 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -26,11 +26,7 @@ jobs:
     name: Analyze
     runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
     timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
-    permissions:
-      actions: read
-      contents: read
-      security-events: write
-      issues: write
+    permissions: write-all
 
     strategy:
       fail-fast: false

From 3b3ddf38ad1944cba6f4e79a6168432139dde14c Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 13:37:03 -0500
Subject: [PATCH 091/105] Move permissions up above jobs

---
 .github/workflows/codeql.yml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 64f72fa297..680229d231 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -21,12 +21,17 @@ on:
     - cron: '30 5 * * 5'
   workflow_dispatch:
 
+permissions:
+      actions: read
+      contents: read
+      security-events: write
+      issues: write
+
 jobs:
   analyze:
     name: Analyze
     runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
     timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
-    permissions: write-all
 
     strategy:
       fail-fast: false

From e2d53e1fd577ff5a918ab0cc2a6685ce423fef72 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 14:39:21 -0500
Subject: [PATCH 092/105] Move permissions back to original location

---
 .github/workflows/codeql.yml | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 680229d231..c0292dbeb4 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -21,17 +21,16 @@ on:
     - cron: '30 5 * * 5'
   workflow_dispatch:
 
-permissions:
-      actions: read
-      contents: read
-      security-events: write
-      issues: write
-
 jobs:
   analyze:
     name: Analyze
     runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
     timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+      issues: write
 
     strategy:
       fail-fast: false

From 3819013e0d7cc679ae1f6365670e89e659f185af Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 14:55:17 -0500
Subject: [PATCH 093/105] Updated branch to test

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index c0292dbeb4..b847910b5c 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-50' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-50' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From e8a1a565120b8e711d439cf1c5d49eef38b54880 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 15:06:40 -0500
Subject: [PATCH 094/105] Change token and branch

---
 .github/workflows/codeql.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index b847910b5c..27ac6325cf 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'create-new-codeql-issues-50' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'create-new-codeql-issues-50' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:
@@ -106,7 +106,7 @@ jobs:
     - name: Create New Issues
       uses: actions/github-script@v7
       with:
-        github-token: ${{ secrets.GITHUB_TOKEN }}
+        github-token: ${{ secrets.HACKFORLA_ADMIN_TOKEN }}
         script: |
           const script = require('./github-actions/trigger-issue/create-codeql-issues/create-new-issues.js');
           const alertIds = ${{ steps.check-existing-issues.outputs.result }};

From 36f871d7aac91f709f5119ed43fec4fb34f62024 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 15:11:13 -0500
Subject: [PATCH 095/105] Change branch back to gh-pages

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 27ac6325cf..53e6ab1657 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From 5eb1742d00af6d6c5350a91a05316edbd7237f60 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 15:13:56 -0500
Subject: [PATCH 096/105] Change branch to test

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 53e6ab1657..27ac6325cf 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From cff82b9cdf6109213aeef893e8667eab9f74f4b7 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 15:16:51 -0500
Subject: [PATCH 097/105] Change branch back to gh-pages

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 27ac6325cf..53e6ab1657 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From 68b2de0cf67188314667c725b564aa5cdd33930e Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 16:52:13 -0500
Subject: [PATCH 098/105] Add if statement to new yml steps

---
 .github/workflows/codeql.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 53e6ab1657..b44fbbed67 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -81,6 +81,7 @@ jobs:
 
     # Fetch Alerts
     - name: Fetch Alerts
+      if: github.event_name != 'pull_request'
       id: fetch-alerts
       uses: actions/github-script@v7
       with:
@@ -92,6 +93,7 @@ jobs:
 
     # Check Existing Issues
     - name: Check Existing Issues
+      if: github.event_name != 'pull_request'
       uses: actions/github-script@v7
       id: check-existing-issues
       with:
@@ -104,6 +106,7 @@ jobs:
 
     # Create New Issues
     - name: Create New Issues
+      if: github.event_name != 'pull_request'
       uses: actions/github-script@v7
       with:
         github-token: ${{ secrets.HACKFORLA_ADMIN_TOKEN }}

From 7efebe1e2d82bb080ae118cedbaec90add56367e Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 16:56:47 -0500
Subject: [PATCH 099/105] Change branch for testing

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index b44fbbed67..79e139d68f 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From 10a00ce2d4d079a552bcbc6c896ed3403e6888c6 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Sun, 14 Apr 2024 17:11:11 -0500
Subject: [PATCH 100/105] Change branch back to gh-pages

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 79e139d68f..b44fbbed67 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From 4a753ff868d8140f2fcb7eb85f704cee75791425 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Mon, 15 Apr 2024 17:35:25 -0500
Subject: [PATCH 101/105] Add create-new-issues id and reorder id and if
 conditions to be consistent

---
 .github/workflows/codeql.yml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index b44fbbed67..851f4b675f 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -81,8 +81,8 @@ jobs:
 
     # Fetch Alerts
     - name: Fetch Alerts
-      if: github.event_name != 'pull_request'
       id: fetch-alerts
+      if: github.event_name != 'pull_request'
       uses: actions/github-script@v7
       with:
         github-token: ${{ secrets.GITHUB_TOKEN }}
@@ -93,9 +93,9 @@ jobs:
 
     # Check Existing Issues
     - name: Check Existing Issues
+      id: check-existing-issues
       if: github.event_name != 'pull_request'
       uses: actions/github-script@v7
-      id: check-existing-issues
       with:
         github-token: ${{ secrets.GITHUB_TOKEN }}
         script: |
@@ -106,6 +106,7 @@ jobs:
 
     # Create New Issues
     - name: Create New Issues
+      id: create-new-issues
       if: github.event_name != 'pull_request'
       uses: actions/github-script@v7
       with:

From e88faceefce591bc394a5e062b4244e6108f866e Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Mon, 15 Apr 2024 17:47:51 -0500
Subject: [PATCH 102/105] Change branch to test

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 851f4b675f..ae7f7b685d 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'gh-pages' ]
+    branches: [ 'create-new-codeql-issues-5059' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From 23d3cb538f41faf2c433b05f9fc7d00bb97cc575 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Mon, 15 Apr 2024 17:50:57 -0500
Subject: [PATCH 103/105] Added unused variable to see if CodeQL picks it up

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js           | 1 +
 1 file changed, 1 insertion(+)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 94c119d0f3..0799e39d1f 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,6 +1,7 @@
 // Global variables
 var github;
 var context;
+const test = "test" // introducing unused variable to see if CodeQL picks it up
 
 /**
  * Fetches a list of open CodeQL alerts from the GitHub API.

From 342fdb413e6a57458292b49e5b6d744374271438 Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Mon, 15 Apr 2024 17:52:24 -0500
Subject: [PATCH 104/105] Changed branch to gh-pages

---
 .github/workflows/codeql.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index ae7f7b685d..851f4b675f 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -13,10 +13,10 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ 'create-new-codeql-issues-5059' ]
+    branches: [ 'gh-pages' ]
   schedule:
     - cron: '30 5 * * 5'
   workflow_dispatch:

From 4e892adf8f7126b60bc78be7e60621c93d40ccaf Mon Sep 17 00:00:00 2001
From: Gayle Martin <hello.gmartin@gmail.com>
Date: Mon, 15 Apr 2024 17:58:46 -0500
Subject: [PATCH 105/105] Removed unused variable

---
 .../trigger-issue/create-codeql-issues/fetch-alerts.js           | 1 -
 1 file changed, 1 deletion(-)

diff --git a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
index 0799e39d1f..94c119d0f3 100644
--- a/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
+++ b/github-actions/trigger-issue/create-codeql-issues/fetch-alerts.js
@@ -1,7 +1,6 @@
 // Global variables
 var github;
 var context;
-const test = "test" // introducing unused variable to see if CodeQL picks it up
 
 /**
  * Fetches a list of open CodeQL alerts from the GitHub API.