diff --git a/.changeset/loose-worms-tie.md b/.changeset/loose-worms-tie.md
new file mode 100644
index 00000000..2455da03
--- /dev/null
+++ b/.changeset/loose-worms-tie.md
@@ -0,0 +1,5 @@
+---
+"@itwin/changed-elements-react": patch
+---
+
+Changed elements gets hidden when toggling filters
diff --git a/.gitignore b/.gitignore
index b5d06cc4..9b15d9c8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -13,4 +13,4 @@ pnpm-debug.log*
 .env.*
 
 packages/test-app-frontend/dist/
-.DS_Store
+*.DS_Store
diff --git a/packages/changed-elements-react/src/NamedVersionSelector/NamedVersionSelector.tsx b/packages/changed-elements-react/src/NamedVersionSelector/NamedVersionSelector.tsx
index f4ae0243..a8dffaf9 100644
--- a/packages/changed-elements-react/src/NamedVersionSelector/NamedVersionSelector.tsx
+++ b/packages/changed-elements-react/src/NamedVersionSelector/NamedVersionSelector.tsx
@@ -93,8 +93,12 @@ export function NamedVersionSelectorWidget(props: Readonly<NamedVersionSelectorW
     throw new Error("V2 Client is not initialized in given context.");
   }
 
-  const iTwinId = iModel.iTwinId as string;
-  const iModelId = iModel.iModelId as string;
+  if (!iModel.iTwinId || !iModel.iModelId || !iModel.changeset.id) {
+    throw new Error("Empty IModel Connection")
+  }
+
+  const iTwinId = iModel.iTwinId;
+  const iModelId = iModel.iModelId;
   const currentChangesetId = iModel.changeset.id;
 
   const { isLoading, currentNamedVersion, entries, updateJobStatus } = useNamedVersionsList({
diff --git a/packages/changed-elements-react/src/api/ChangesTreeDataProvider.ts b/packages/changed-elements-react/src/api/ChangesTreeDataProvider.ts
index 44731dfd..c63beed6 100644
--- a/packages/changed-elements-react/src/api/ChangesTreeDataProvider.ts
+++ b/packages/changed-elements-react/src/api/ChangesTreeDataProvider.ts
@@ -31,6 +31,11 @@ export interface ModelElementChanges {
   typeOfChange: number;
 }
 
+export interface EntryPartition {
+  visible: ChangedElementEntry[];
+  hidden: ChangedElementEntry[];
+}
+
 export function isModelElementChanges(input: unknown): input is ModelElementChanges {
   return !!input
     && typeof input === "object"
@@ -1077,19 +1082,30 @@ export class ChangesTreeDataProvider implements ITreeDataProvider {
     return entries;
   }
 
-  /** Get entries with model ids based on a filter function. */
-  public getEntriesWithModelIds(
+  /** Get entries with model ids based on a filter function.
+   * @param includeFilter Function to filter entries that should be visible
+   * @param hideFilter Function to filter entries that should be hidden
+   */
+  public GetEntriesByModelIdsAndFilters(
     modelIds: Set<string>,
-    filterFunc: (entry: ChangedElementEntry) => boolean,
-  ): ChangedElementEntry[] {
-    const entries = [];
-    for (const pair of this._elements) {
-      if (pair[1].modelId !== undefined && modelIds.has(pair[1].modelId) && filterFunc(pair[1])) {
-        entries.push(pair[1]);
+    includeFilter: (entry: ChangedElementEntry) => boolean,
+    hideFilter: (entry: ChangedElementEntry) => boolean,
+  ): EntryPartition {
+    const visible: ChangedElementEntry[] = [];
+    const hidden:  ChangedElementEntry[] = [];
+
+    for (const [, entry] of this._elements) {
+      if (!entry.modelId || !modelIds.has(entry.modelId)) continue;
+
+      if (hideFilter(entry)){
+        hidden.push(entry);
+      }
+      else if (includeFilter(entry)) {
+        visible.push(entry);
       }
     }
 
-    return entries;
+    return { visible, hidden };
   }
 
   public getModelAllChildElementEntries(modelId: string): ChangedElementEntry[] {
diff --git a/packages/changed-elements-react/src/api/VersionCompareTiles.ts b/packages/changed-elements-react/src/api/VersionCompareTiles.ts
index 48d3952c..b8fb98e7 100644
--- a/packages/changed-elements-react/src/api/VersionCompareTiles.ts
+++ b/packages/changed-elements-react/src/api/VersionCompareTiles.ts
@@ -116,7 +116,8 @@ export class Provider
   private _treeRef2d: Reference | undefined;
   public readonly iModel: IModelConnection;
   public secondaryIModelOverrides: FeatureSymbology.Overrides;
-  public changedElems: ChangedElementEntry[];
+  public visibleChangedElems: ChangedElementEntry[];
+  public hiddenChangedElems: ChangedElementEntry[];
   public readonly viewport: Viewport;
   private readonly _removals: Array<() => void> = [];
   private _options: VersionDisplayOptions | undefined;
@@ -135,9 +136,11 @@ export class Provider
     options?: VersionDisplayOptions,
     targetIModelModels?: Set<string>,
     targetIModelCategories?: Set<string>,
+    hiddenElems?: ChangedElementEntry[],
   ) {
     this.iModel = iModel;
-    this.changedElems = elems;
+    this.visibleChangedElems = elems;
+    this.hiddenChangedElems = hiddenElems || [];
     this.viewport = vp;
     this._options = options;
 
@@ -224,9 +227,11 @@ export class Provider
   /**
    * Set changed element entries to visualize
    * @param elems Changed elements
+   * @param hiddenElems Optional hidden changed elements to override display
    */
-  public setChangedElems(elems: ChangedElementEntry[]) {
-    this.changedElems = elems;
+  public setChangedElems(elems: ChangedElementEntry[], hiddenElems: ChangedElementEntry[] | undefined) {
+    this.visibleChangedElems = elems;
+    this.hiddenChangedElems = hiddenElems || [];
     this.viewport.invalidateScene();
     this.viewport.setFeatureOverrideProviderChanged();
     refreshEvent.raiseEvent();
@@ -347,8 +352,8 @@ export class Provider
       this._wantHideUnchanged() ? hiddenAppearance : unchangedAppearance,
     );
 
-    const insertedElems = this.changedElems.filter((entry: ChangedElement) => entry.opcode === DbOpcode.Insert);
-    const updatedElems = this.changedElems.filter((entry: ChangedElement) => entry.opcode === DbOpcode.Update);
+    const insertedElems = this.visibleChangedElems.filter((entry: ChangedElement) => entry.opcode === DbOpcode.Insert);
+    const updatedElems = this.visibleChangedElems.filter((entry: ChangedElement) => entry.opcode === DbOpcode.Update);
 
     const inserted = FeatureAppearance.fromJSON({
       rgb: VersionCompareVisualizationManager.colorInsertedRgb(),
@@ -360,6 +365,7 @@ export class Provider
           ? true
           : undefined,
     });
+
     for (const elem of insertedElems) {
       // Check if user is emphasizing some elements, and if so, override said elements
       if (this._internalAlwaysDrawn.size === 0 || this._internalAlwaysDrawn.has(elem.id)) {
@@ -391,7 +397,22 @@ export class Provider
     for (const elem of updatedElems) {
       // Check if user is emphasizing some elements, and if so, only override said elements
       if (this._internalAlwaysDrawn.size === 0 || this._internalAlwaysDrawn.has(elem.id)) {
-        overrides.override({ elementId: elem.id, appearance: elem.indirect ? updatedIndirectly : updated });
+        overrides.override({
+          elementId: elem.id,
+          appearance: elem.indirect
+              ? updatedIndirectly
+              : updated,
+         });
+      }
+    }
+
+    for (const elem of this.hiddenChangedElems){
+      // If the user has hidden elements, we have to override them with the hidden appearance
+      if (this._internalAlwaysDrawn.size === 0 || this._internalAlwaysDrawn.has(elem.id)) {
+        overrides.override({
+          elementId: elem.id,
+          appearance: hiddenAppearance,
+        });
       }
     }
   }
@@ -454,7 +475,7 @@ export class Provider
     // Handle removed elements that are in secondary iModel
     if (!this._wantHideRemoved()) {
       const deletedElemIds = new Set(
-        this.changedElems
+        this.visibleChangedElems
           .filter(
             (entry: ChangedElement) =>
               entry.opcode === DbOpcode.Delete &&
@@ -474,7 +495,7 @@ export class Provider
     // Handle modified elements that are in secondary iModel
     if (this._options?.wantModified && !this._wantHideModified()) {
       const modifiedElemIds = new Set(
-        this.changedElems
+        this.visibleChangedElems
           .filter(
             (entry: ChangedElement) =>
               entry.opcode === DbOpcode.Update && !neverDrawn.has(entry.id),
@@ -745,7 +766,7 @@ export class Provider
 
   public toJSON(): ProviderProps {
     return {
-      changedElems: this.changedElems,
+      changedElems: this.visibleChangedElems,
       options: this._options,
       internalAlwaysDrawn: this._internalAlwaysDrawn,
       internalNeverDrawn: this._internalNeverDrawn,
@@ -762,7 +783,7 @@ export class Provider
   }
 
   public fromJSON(props: ProviderProps) {
-    this.changedElems = props.changedElems;
+    this.visibleChangedElems = props.changedElems;
     this._internalAlwaysDrawn = props.internalAlwaysDrawn;
     this._internalNeverDrawn = props.internalNeverDrawn;
     this._exclusive = props.exclusive;
@@ -926,11 +947,12 @@ export function isVersionComparisonDisplayUsingContextTools(vp: Viewport): boole
 
 export function updateVersionCompareDisplayEntries(
   vp: Viewport,
-  entries: ChangedElementEntry[],
+  visibleEntries: ChangedElementEntry[],
+  hiddenEntries: ChangedElementEntry[] | undefined,
 ): boolean {
   const existing = vp.findFeatureOverrideProviderOfType(Provider);
   if (undefined !== existing && existing instanceof Provider) {
-    existing.setChangedElems(entries);
+    existing.setChangedElems(visibleEntries, hiddenEntries);
     return true;
   }
 
diff --git a/packages/changed-elements-react/src/api/VersionCompareVisualization.ts b/packages/changed-elements-react/src/api/VersionCompareVisualization.ts
index 824534f6..86cf39e6 100644
--- a/packages/changed-elements-react/src/api/VersionCompareVisualization.ts
+++ b/packages/changed-elements-react/src/api/VersionCompareVisualization.ts
@@ -102,15 +102,17 @@ export class VersionCompareVisualizationManager {
 
   /**
    * Used to emphasize and focus on a list of elements instead of all changed elements in comparison
-   * @param elements Elements to focus during visualization
+   * @param visible Elements to focus during visualization
+   * @param hiddenElements Optional list of elements that should not be shown in the visualization
    */
-  public setFocusedElements = async (elements: ChangedElementEntry[] | undefined) => {
-    this._focusedElements = elements;
+  public setFocusedElements = async (visible: ChangedElementEntry[] | undefined, hiddenElements?: ChangedElementEntry[]) => {
+    this._focusedElements = visible;
     updateVersionCompareDisplayEntries(
       this._viewport,
       this._focusedElements !== undefined
         ? this._focusedElements
         : this._changedElements,
+      hiddenElements,
     );
   };
 
@@ -288,6 +290,7 @@ export class VersionCompareVisualizationManager {
   public async toggleUnchangedVisibility(hide?: boolean): Promise<boolean> {
     this.displayOptions.hideUnchanged =
       hide !== undefined ? hide : !this.displayOptions.hideUnchanged;
+
     this.displayOptions.changedModels = this._changedModels;
     this.displayOptions.emphasized = true;
 
diff --git a/packages/changed-elements-react/src/widgets/EnhancedElementsInspector.tsx b/packages/changed-elements-react/src/widgets/EnhancedElementsInspector.tsx
index 94b0a15e..d207898b 100644
--- a/packages/changed-elements-react/src/widgets/EnhancedElementsInspector.tsx
+++ b/packages/changed-elements-react/src/widgets/EnhancedElementsInspector.tsx
@@ -810,26 +810,48 @@ export class ChangedElementsListComponent extends Component<ChangedElementsListP
     return this.props.dataProvider.getEntriesFromIds(ids);
   };
 
-  /** Returns true it state's filterOptions matches the entry. */
-  private _filterEntryWithOptions = (entry: ChangedElementEntry): boolean => {
-    return this._filterEntryWithGivenOptions(entry, this.state.filterOptions);
-  };
+  /** return true for entries we want to hide */
+  private _hideFilter = (entry: ChangedElementEntry, opts: FilterOptions): boolean => {
+    if (entry.opcode === DbOpcode.Update) {
+      // hide when the filter options do not want modified elements
+      if (!opts.wantModified) {
+        return true;
+      }
+      // hide when type of change filtering or advanced filtering is matched
+      if (!this._modifiedEntryMatchesFilters(entry, opts)){
+        return true;
+      }
+    }
 
-  /** Returns true if filterOptions matches the entry. */
-  private _filterEntryWithGivenOptions = (entry: ChangedElementEntry, opts: FilterOptions): boolean => {
-    return this._wantShowEntry(entry, opts);
-  };
+    // hide when the filter options do not want added elements
+    if (entry.opcode === DbOpcode.Insert && !opts.wantAdded) {
+      return true;
+    }
+    return false;
+  }
+
+  /** return true for entries we want to include */
+  private _includeFilter = (entry: ChangedElementEntry, opts: FilterOptions): boolean => {
+    if (entry.opcode === DbOpcode.Delete){
+      return opts.wantDeleted;
+    }
+    return true;
+  }
 
   /** Obtains the children nodes of the models, creates their entries, and visualizes them. */
   private _visualizeModelNodes = async (nodes: TreeNodeItem[], options?: FilterOptions): Promise<void> => {
     // Handle model nodes: Get the children entries they already have into an array
-    const filter = options
-      ? (entry: ChangedElementEntry) => this._filterEntryWithGivenOptions(entry, options)
-      : this._filterEntryWithOptions;
     const modelIds = new Set(nodes.map((value) => value.id));
-    const entries = this.props.dataProvider.getEntriesWithModelIds(modelIds, filter);
+    const opts = options ?? this.state.filterOptions;
+
+    const includeFilter = (e: ChangedElementEntry) => this._includeFilter(e, opts);
+    const hideFilter = (e: ChangedElementEntry) => this._hideFilter(e, opts);
+
+    const { visible, hidden } =
+      this.props.dataProvider.GetEntriesByModelIdsAndFilters(modelIds, includeFilter, hideFilter);
+
     const visualizationManager = this.props.manager.visualization?.getSingleViewVisualizationManager();
-    await visualizationManager?.setFocusedElements(entries);
+    await visualizationManager?.setFocusedElements(visible, hidden);
   };
 
   /**
@@ -856,15 +878,15 @@ export class ChangedElementsListComponent extends Component<ChangedElementsListP
   ): Promise<void> => {
     // Get entries to visualize containing the relevant children entries as well
     const entries = targetNode ? this._getEntriesToVisualize(targetNode) : directChildNodes.map(nodeToEntry);
+    const opts = options ?? this.state.filterOptions;
 
     // Filter function for matching to the given filter options
-    const filterFunc = options
-      ? (entry: ChangedElementEntry) => this._filterEntryWithGivenOptions(entry, options)
-      : this._filterEntryWithOptions;
+    const includeFilter = (e: ChangedElementEntry) => this._includeFilter(e, opts) && !this._hideFilter(e, opts);
+    const hideFilter = (e: ChangedElementEntry) => this._hideFilter(e, opts);
 
     // Visualize the filtered elements and focus
     const visualizationManager = this.props.manager.visualization?.getSingleViewVisualizationManager();
-    await visualizationManager?.setFocusedElements(entries.filter(filterFunc));
+    await visualizationManager?.setFocusedElements(entries.filter(includeFilter), entries.filter(hideFilter));
   };
 
   /** Sets viewport visualization based on the given nodes and target/parent node. */