diff --git a/revdep/README.md b/revdep/README.md
index 2652759ea90..aac941620ae 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,18 +1,13 @@
# Revdeps
-## Failed to check (11)
+## New problems (6)
-|package |version |error |warning |note |
-|:---------|:-------|:-----|:-------|:----|
-|NA |? | | | |
-|DRviaSPCN |? | | | |
-|genekitr |? | | | |
-|immcp |? | | | |
-|MACP |? | | | |
-|numbat |? | | | |
-|NA |? | | | |
-|Platypus |? | | | |
-|NA |? | | | |
-|tidySEM |? | | | |
-|vivid |? | | | |
+|package |version |error |warning |note |
+|:----------|:-------|:------|:-------|:----|
+|[gemtc](problems.md#gemtc)|1.0-1 |__+1__ | | |
+|[leidenAlg](problems.md#leidenalg)|1.0.5 |__+2__ | |1 |
+|[leidenbase](problems.md#leidenbase)|0.1.18 |__+2__ |__+1__ |1 |
+|[nda](problems.md#nda)|0.1.6 |__+1__ | | |
+|[netseg](problems.md#netseg)|1.0-1 |__+1__ | | |
+|[SNscan](problems.md#snscan)|1.0 |__+1__ | | |
diff --git a/revdep/cran.md b/revdep/cran.md
index c6bdb020b30..484ff096ea7 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,19 +1,33 @@
## revdepcheck results
-We checked 778 reverse dependencies (775 from CRAN + 3 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 7 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 0 new problems
- * We failed to check 8 packages
+ * We saw 6 new problems
+ * We failed to check 0 packages
Issues with CRAN packages are summarised below.
-### Failed to check
+### New problems
+(This reports the first line of each new failure)
+
+* gemtc
+ checking tests ... ERROR
+
+* leidenAlg
+ checking examples ... ERROR
+ checking tests ... ERROR
+
+* leidenbase
+ checking examples ... ERROR
+ checking tests ... ERROR
+ checking re-building of vignette outputs ... WARNING
+
+* nda
+ checking examples ... ERROR
+
+* netseg
+ checking tests ... ERROR
+
+* SNscan
+ checking examples ... ERROR
-* DRviaSPCN (NA)
-* genekitr (NA)
-* immcp (NA)
-* MACP (NA)
-* numbat (NA)
-* Platypus (NA)
-* tidySEM (NA)
-* vivid (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 233d3ba695a..9a207363396 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,673 +1 @@
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `revdepcheck::cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# DRviaSPCN
-
-
-
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/DRviaSPCN
-* Date/Publication: 2022-03-03 16:00:02 UTC
-* Number of recursive dependencies: 170
-
-Run `revdepcheck::cloud_details(, "DRviaSPCN")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/DRviaSPCN/new/DRviaSPCN.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘DRviaSPCN/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘DRviaSPCN’ version ‘0.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/DRviaSPCN/old/DRviaSPCN.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘DRviaSPCN/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘DRviaSPCN’ version ‘0.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# genekitr
-
-
-
-* Version: 1.1.9
-* GitHub: https://github.com/GangLiLab/genekitr
-* Source code: https://github.com/cran/genekitr
-* Date/Publication: 2023-04-15 07:50:02 UTC
-* Number of recursive dependencies: 206
-
-Run `revdepcheck::cloud_details(, "genekitr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘genekitr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘genekitr’ version ‘1.1.9’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘genekitr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘genekitr’ version ‘1.1.9’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# immcp
-
-
-
-* Version: 1.0.3
-* GitHub: https://github.com/YuanlongHu/immcp
-* Source code: https://github.com/cran/immcp
-* Date/Publication: 2022-05-12 05:50:02 UTC
-* Number of recursive dependencies: 195
-
-Run `revdepcheck::cloud_details(, "immcp")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# MACP
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/mrbakhsh/MACP
-* Source code: https://github.com/cran/MACP
-* Date/Publication: 2023-02-28 17:32:30 UTC
-* Number of recursive dependencies: 234
-
-Run `revdepcheck::cloud_details(, "MACP")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MACP/new/MACP.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MACP/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MACP’ version ‘0.1.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 3 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MACP/old/MACP.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MACP/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MACP’ version ‘0.1.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 3 NOTEs
-
-
-
-
-
-```
-# numbat
-
-
-
-* Version: 1.3.0
-* GitHub: https://github.com/kharchenkolab/numbat
-* Source code: https://github.com/cran/numbat
-* Date/Publication: 2023-04-02 17:50:03 UTC
-* Number of recursive dependencies: 132
-
-Run `revdepcheck::cloud_details(, "numbat")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘numbat/DESCRIPTION’ ... OK
-* this is package ‘numbat’ version ‘1.3.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ggtree', 'scistreer'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘numbat/DESCRIPTION’ ... OK
-* this is package ‘numbat’ version ‘1.3.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ggtree', 'scistreer'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `revdepcheck::cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# Platypus
-
-
-
-* Version: 3.4.1
-* GitHub: NA
-* Source code: https://github.com/cran/Platypus
-* Date/Publication: 2022-08-15 07:20:20 UTC
-* Number of recursive dependencies: 354
-
-Run `revdepcheck::cloud_details(, "Platypus")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Platypus/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘Platypus’ version ‘3.4.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-Package required but not available: ‘ggtree’
-
-Packages suggested but not available for checking:
- 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers',
- 'vanddraabe'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Platypus/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘Platypus’ version ‘3.4.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-Package required but not available: ‘ggtree’
-
-Packages suggested but not available for checking:
- 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers',
- 'vanddraabe'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `revdepcheck::cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# tidySEM
-
-
-
-* Version: 0.2.4
-* GitHub: https://github.com/cjvanlissa/tidySEM
-* Source code: https://github.com/cran/tidySEM
-* Date/Publication: 2023-05-01 20:00:06 UTC
-* Number of recursive dependencies: 189
-
-Run `revdepcheck::cloud_details(, "tidySEM")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘tidySEM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘tidySEM’ version ‘0.2.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘blavaan’
-
-Package suggested but not available for checking: ‘umx’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘tidySEM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘tidySEM’ version ‘0.2.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘blavaan’
-
-Package suggested but not available for checking: ‘umx’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# vivid
-
-
-
-* Version: 0.2.7
-* GitHub: NA
-* Source code: https://github.com/cran/vivid
-* Date/Publication: 2023-04-11 13:50:02 UTC
-* Number of recursive dependencies: 209
-
-Run `revdepcheck::cloud_details(, "vivid")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/vivid/new/vivid.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.2.7’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘vividVignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/vivid/old/vivid.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.2.7’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘vividVignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
+*Wow, no problems at all. :)*
\ No newline at end of file
diff --git a/revdep/problems.md b/revdep/problems.md
index 9a207363396..a9208860476 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1 +1,309 @@
-*Wow, no problems at all. :)*
\ No newline at end of file
+# gemtc
+
+
+
+* Version: 1.0-1
+* GitHub: https://github.com/gertvv/gemtc
+* Source code: https://github.com/cran/gemtc
+* Date/Publication: 2021-05-14 23:20:02 UTC
+* Number of recursive dependencies: 58
+
+Run `revdepcheck::cloud_details(, "gemtc")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘test.R’
+ Running the tests in ‘tests/test.R’ failed.
+ Last 13 lines of output:
+ 8. └─base::all.equal.list(target, current, ...)
+ 9. ├─base::all.equal(...)
+ 10. └─base::all.equal.default(...)
+ 11. └─base::all.equal.list(target, current, ...)
+ 12. └─base::attr.all.equal(target, current, ...)
+ 13. ├─base::length(target)
+ 14. └─igraph:::length.igraph(target)
+ 15. └─igraph::vcount(x)
+ 16. └─igraph:::ensure_igraph(graph)
+ 17. └─igraph::is_igraph(graph)
+ 18. └─igraph:::warn_version(graph)
+
+ [ FAIL 1 | WARN 0 | SKIP 0 | PASS 376 ]
+ Error: Test failures
+ Execution halted
+ ```
+
+# leidenAlg
+
+
+
+* Version: 1.0.5
+* GitHub: https://github.com/kharchenkolab/leidenAlg
+* Source code: https://github.com/cran/leidenAlg
+* Date/Publication: 2022-09-30 07:20:02 UTC
+* Number of recursive dependencies: 68
+
+Run `revdepcheck::cloud_details(, "leidenAlg")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ Running examples in ‘leidenAlg-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: as.dendrogram.fakeCommunities
+ > ### Title: Returns pre-calculated dendrogram
+ > ### Aliases: as.dendrogram.fakeCommunities
+ >
+ > ### ** Examples
+ >
+ > rLeidenComm = suppressWarnings(rleiden.community(exampleGraph, n.cores=1))
+ This graph was created by an old(er) igraph version.
+ Call upgrade_graph() on it to use with the current igraph version
+ For now we convert it on the fly...
+ Error in find_partition(graph, igraph::E(graph)$weight, resolution, n.iterations) :
+ REAL() can only be applied to a 'numeric', not a 'NULL'
+ Execution halted
+ ```
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ Backtrace:
+ ▆
+ 1. ├─base::suppressWarnings(rleiden.community(exampleGraph, n.cores = 1)) at test_functions.R:19:8
+ 2. │ └─base::withCallingHandlers(...)
+ 3. └─leidenAlg::rleiden.community(exampleGraph, n.cores = 1)
+ 4. └─sccore::plapply(...)
+ 5. └─base::lapply(...)
+ 6. └─leidenAlg (local) FUN(X[[i]], ...)
+ 7. └─leidenAlg::rleiden.community(...)
+ 8. └─leidenAlg::leiden.community(graph, resolution = res, ...)
+ 9. └─leidenAlg::find_partition(...)
+
+ [ FAIL 2 | WARN 0 | SKIP 0 | PASS 3 ]
+ Error: Test failures
+ Execution halted
+ ```
+
+## In both
+
+* checking for GNU extensions in Makefiles ... NOTE
+ ```
+ GNU make is a SystemRequirements.
+ ```
+
+# leidenbase
+
+
+
+* Version: 0.1.18
+* GitHub: https://github.com/cole-trapnell-lab/leidenbase
+* Source code: https://github.com/cran/leidenbase
+* Date/Publication: 2023-04-15 09:20:02 UTC
+* Number of recursive dependencies: 54
+
+Run `revdepcheck::cloud_details(, "leidenbase")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ Running examples in ‘leidenbase-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: leiden_find_partition
+ > ### Title: Leiden find partition community detection function
+ > ### Aliases: leiden_find_partition
+ >
+ > ### ** Examples
+ >
+ > library(igraph)
+ ...
+
+ > fpath <- system.file( 'testdata', 'igraph_n1500_edgelist.txt.gz', package = 'leidenbase' )
+ > zfp <- gzfile(fpath)
+ > igraph <- read_graph( file = zfp, format='edgelist', n=1500 )
+ > res <- leiden_find_partition(igraph=igraph,
+ + partition_type='CPMVertexPartition',
+ + resolution_parameter=1e-5)
+ Error in leiden_find_partition(igraph = igraph, partition_type = "CPMVertexPartition", :
+ REAL() can only be applied to a 'numeric', not a 'NULL'
+ Execution halted
+ ```
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ Error in `leidenbase::leiden_find_partition(igraph, partition_type = "RBConfigurationVertexPartition",
+ node_sizes = nodsiz, seed = 123456, resolution_parameter = 0.5)`: REAL() can only be applied to a 'numeric', not a 'NULL'
+ Backtrace:
+ ▆
+ 1. └─leidenbase::leiden_find_partition(...) at test-leidenbase.R:224:2
+ ── Error ('test-leidenbase.R:245:3'): modularity and significance return values ──
+ Error in `leidenbase::leiden_find_partition(igraph, partition_type = "CPMVertexPartition",
+ seed = 123456, resolution_parameter = 0.1)`: REAL() can only be applied to a 'numeric', not a 'NULL'
+ Backtrace:
+ ▆
+ 1. └─leidenbase::leiden_find_partition(...) at test-leidenbase.R:245:2
+
+ [ FAIL 11 | WARN 0 | SKIP 0 | PASS 6 ]
+ Error: Test failures
+ Execution halted
+ ```
+
+* checking re-building of vignette outputs ... WARNING
+ ```
+ Error(s) in re-building vignettes:
+ ...
+ --- re-building ‘leidenbase.Rmd’ using rmarkdown
+
+ Quitting from lines 87-92 [unnamed-chunk-1] (leidenbase.Rmd)
+ Error: processing vignette 'leidenbase.Rmd' failed with diagnostics:
+ REAL() can only be applied to a 'numeric', not a 'NULL'
+ --- failed re-building ‘leidenbase.Rmd’
+
+ SUMMARY: processing the following file failed:
+ ‘leidenbase.Rmd’
+
+ Error: Vignette re-building failed.
+ Execution halted
+ ```
+
+## In both
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 19.1Mb
+ sub-directories of 1Mb or more:
+ libs 18.8Mb
+ ```
+
+# nda
+
+
+
+* Version: 0.1.6
+* GitHub: https://github.com/kzst/nda
+* Source code: https://github.com/cran/nda
+* Date/Publication: 2022-10-14 13:10:02 UTC
+* Number of recursive dependencies: 81
+
+Run `revdepcheck::cloud_details(, "nda")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ Running examples in ‘nda-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: biplot.nda
+ > ### Title: Biplot function for Network-based Dimensionality Reduction and
+ > ### Analysis (NDA)
+ > ### Aliases: biplot.nda
+ > ### Keywords: plot
+ >
+ > ### ** Examples
+ ...
+ >
+ > # Biplot function without feature selection
+ >
+ > data("CrimesUSA1990.X")
+ > df<-CrimesUSA1990.X
+ > p<-ndr(df)
+ Error in find_partition(graph, igraph::E(graph)$weight, resolution, n.iterations) :
+ REAL() can only be applied to a 'numeric', not a 'NULL'
+ Calls: ndr -> -> find_partition
+ Execution halted
+ ```
+
+# netseg
+
+
+
+* Version: 1.0-1
+* GitHub: https://github.com/mbojan/netseg
+* Source code: https://github.com/cran/netseg
+* Date/Publication: 2022-08-25 12:10:06 UTC
+* Number of recursive dependencies: 61
+
+Run `revdepcheck::cloud_details(, "netseg")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Complete output:
+ > library(testthat)
+ > library(netseg)
+ >
+ > test_check("netseg")
+ [ FAIL 1 | WARN 0 | SKIP 0 | PASS 73 ]
+
+ ══ Failed tests ════════════════════════════════════════════════════════════════
+ ── Failure ('test-smi.R:5:3'): SMI works ───────────────────────────────────────
+ `smi(as.directed(WhiteKinship), "gender")` produced messages.
+
+ [ FAIL 1 | WARN 0 | SKIP 0 | PASS 73 ]
+ Error: Test failures
+ Execution halted
+ ```
+
+# SNscan
+
+
+
+* Version: 1.0
+* GitHub: NA
+* Source code: https://github.com/cran/SNscan
+* Date/Publication: 2016-01-19 13:09:28
+* Number of recursive dependencies: 11
+
+Run `revdepcheck::cloud_details(, "SNscan")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ Running examples in ‘SNscan-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: network.scan
+ > ### Title: Network Scan Statistic
+ > ### Aliases: network.scan
+ > ### Keywords: scanning method
+ >
+ > ### ** Examples
+ >
+ > data(karate)
+ >
+ > ks=network.scan(g=karate,radius=3,attribute=NULL,
+ + model="pois.stat",pattern="structure")
+ Error in warn_version(graph) :
+ This graph was created by a now unsupported old igraph version.
+ Call upgrade_version() before using igraph functions on that object.
+ Calls: network.scan ... shortest.paths -> ensure_igraph -> is_igraph -> warn_version
+ Execution halted
+ ```
+